Gene detail

Detailed information of OFRAG00000015551.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000015551.1	SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 3	tig00037495	93787	139690	-

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000015551.1

ATGCAAGAAAAAGATGAAATTGTTTCATTGGAAAATTGTCTATCCGACCTGCGATGTTTCAGTTGCCTAAAGCCGTGCATCCAACCCGACTTAAATAACCGCGATTGCTGTCTCATGTGTAAGAATACAGAAGAAGAAGATTCATGTAAACAAAGTTGTGAAACTGTATTCAATATGGTTTACACACGACCTGGAAGTTGTCCAGTATTTTCAGCCTCTGCGGAATGTTACGTCGAGCAGTGCATTGAAGACAACAAATGTAGTGAGGATATGAAATGCTGCGCTGTTAGAGAAGGATGTAATAAATGTAGTAAAGCAGTTGGTAAACTGAAAGGTATTCCTATGATACCTGCTAAACCAAAGATAAATCAAAATCGAGGAGATATTAAAATATATTGGATTAACAAAGATTCTCACAATGGAATTGTATTATATGTTCTGTTTTATCGTTCATGTAAAACTAGAGAAGATATAGATACAATTGATTGGACCATTAATTCACAGCTCATAGACACCTACAAGATTATAAGAGATTTGCAGCCAGGAATGTTTTACCAATATAGAGTGCTAGCTATTTCACTAAATGGAAGTATGGGTCCTACTAATAATTCCGACGTATTTCACCTACCGTACGATTCAACACCACCTCTCGCACCAAACAATGTACACATAAGTCATTCGAGTAGTGTCGATAATACATTCAGCGTAACGATCAAATGGGATTTGCCCGAGAATCCAATCTTTAGATACAAGATTACCTACTCAGAATATCCAAAGATGAATAACTCAGTAATTACAAAAAAAGTGAAGGGGGATAATTACGAAATTATTTTGACAAAATTGAAACCAAATACTGCATATGTAATTCAGGTACAAGCCATTATCAAAATAGCAAATAAAAGAATAAAGAGTAACAGGACATTGATAATGATAAAAAATCCCGACATTACTTCATATGGGAAATCTCAATATGTGCGATCTGGTACATCAGCTAATGCATTGAAACCAGCTAATATTAATTCTGTTCATTTATCGGAAGTATATCAACTCTTAAATGGCTCTTTATGCGCAGATATTTCGTGGACTAGACCCACTTCTTTGTTCACCGATAGATCTCCTATAGAAAAAGTTCAGATTCGATGGAAGCCGTCGGCTTGCCATGAAAGGGTTGAAACAAAGACTATAACTAAAGAGATTAACATCATCACCAATAGAACCATATTTAAATTATTTTCTATCCAACCCCACTGCAATATTTATAATGTAAACATTTGGCCGATATCAAGATTCAACATATCCGGCCAAATAGTAAATAAAACGTTGCAGTTCAAAGATTTCGGAGAACTAGCTGATAATTCTGACAAGCCGAAAAAATTAGCCAAAGGGGGTCCGTGGGATTTAAAATTTTCTCTTGAATTCGATCATTTGTCTGGACAATTTGTGAAACTATCCTGGCAACCAGCACTTGAAGATGTACTTAATTATTATCTAGAATATACGATTAAAGGCACAAACACATTTTTAAAAATATTACCAAAGAATACCTTATTTTATACAATGAAGAATCTTTTACCGGAAACTTTGTATGAAATTCGCATATCAGCATTAATTCCTCAAAAATACAATTATAATATTATTGTTTATCAAGAAAATTCTTCGATCTCATTCAAAACTCCTAGAAATGAATTACGCGGCAATTTCAATTTAAAGCCATCTTTTATAGCGAAGGAAGTTGTTCCATTAAACTTTAGAAAATACATTAATATTGATGAACACGGACACCAATTACCTATACCAAAATTGAATCCAACAATTTTTAATAAAAAAGTTATAGCTAAACTTGAAATTGATTGCAGGGCTAGTTTATTTACAGCTGGAGCAGGCCAAATGAATAGCAAAGAAAGTGCAGCATTTTATAACAATACTCCCAATGAATCTAAACTGGAAACTATAAGGCTTCGCAAGCAAATGTCTTTGTCGAATAAAATGTTGAAGAATTGTCGTAAATTGAATCTCCGATACCATACCAATAAATCGCCGTGGATTCACCAATGCATAAAGAAAAAGGACTCATCTGATTTGCCCATAGAATTTACAGATATTTTAATAACAGTCGCAGTTTACAAACCTTTACTAAAGGACCTACAAAAGTCCTACAAACTACGACCCCAGATCAGCCACTTCATCCAAGTATTGGGTTCGCAGACTTTGGCTGAACTCAAAGACTCCATCCTTTGCTGTAACGACAACATCCTCGTTGGAGACGGCGATTCCACTATTGTCTCCATCGACAATCAACAAATCGTCAGACGCACGACGAAGGACATTTATGGATCCTCTGCGATTTTTATCGAAGATATCTTCTACAACGATGAACGTCGACCTGACTTTGTAGACTATAGCAGTCACGTGATTGACTGGTCGTTGGACGAACGACGCGGGGTAGGTCCTTTCCGTTCGGCGCGCATGGAAGAAACCCCGCTGAGTAGTCTGCCTGCTGTACGCATGGGACACCCGTACCTCTACACCCACCAGGGCGACTGCGAACACTGGATTGCCTTCTCCGACGTCAGGGTACTAGATATCAACGACTCACATAATAGAAATGCCTATCCTTTGGTGGTCGGCATACAGAAAACCCTCCACTACAAGTGTAGACTATGCGGGGACAGACCCGCCAGGTGGATGACTCAACAGTCGAGCATGCAGTGTACTGAAGATCCTTGTTACTTCTGCGAACCCTGCTTTAAAACCATGTTTGTTAACCCGAATAATGGAAAATTCTTTGAAAAGATTGAATATAATCGACTTCCTTTATTTCAAGATTAA

Transcript

OFRAG00000015551.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF00095	WAP	WAP-type (Whey Acidic Protein) 'four-disulfide core'	Domain	Interproscan
PF12251	SNAPC3	snRNA-activating protein complex (SNAPc), subunit 3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961	Domain	Fibronectin type III	Interproscan
IPR008197	Domain	WAP-type 'four-disulfide core' domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR022042	Family	snRNA-activating protein complex, subunit 3	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036645	Homologous_superfamily	Elafin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13421	SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001006	Molecular Function	RNA polymerase III type 3 promoter sequence-specific DNA binding	Interproscan
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding	Interproscan
GO:0003681	Molecular Function	bent DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0019185	Cellular Component	snRNA-activating protein complex	Interproscan
GO:0030414	Molecular Function	peptidase inhibitor activity	Interproscan
GO:0042795	Biological Process	snRNA transcription by RNA polymerase II	Interproscan
GO:0042796	Biological Process	snRNA transcription by RNA polymerase III	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-