Gene detail

Detailed information of OFRAG00000014859.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000014859.1	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	tig00006138	75969	90418	+

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000014859.1

ATGGCCGGCCCATCACATTTGGTTGCACTTTTCGTCGCAACAGCTGGACAGAATGCTGAGAACCTTGGAACTGATGAAGAACAAATCGTATTATGCGTCTATATGCTTTACGATATAGTCAATAATAAGATCAACTCCGTACAAGTACAATATGTCAGTCCGAAACACAATGACATCGCATCTGAAATACTGCTTACTCCTGAATGTAAAATACAAACTGGTATCAAGGAAGAAGTCATTAGAACTGCTCCACCCCTAGAACAAGTTATTGAAGAGTTTGAGAGATTCGTACGAACTAAAGAAGTACATCCTGATCATGGAGGCAACTCATTTGTGTTTGTATGCGACGGACCATTACACTTGAGGATGTGCGTTCACGCGGAGGCAGCCAAGCGTAACATCAACCTTCCGCAACACTTTTACAAGTATTACGACATACGAAAAGCTTTCAAATCTTTTTATAAAATGCCCGTTGTGAACTGTATTAAAGATATGCTTGAATTTATTGGATTGGATGAGGATCCGAGCACAGAATATGGAGCCAAACATTGTCAGGACATTGCCTCTATATTACATCGATTGATATCAGATGGATTTCAATTTGAAGAGCCTTGCATTATCAAATCTAAACTTGAACAAGGAATATGCAATATCTCGGATGTAGTGGACGATGACACAATAGTAAGAGCTAGAGGCTTGCCATGGCAGTCATCCGACCAGGATATCGCACGCTTTTTCCAAGGCTTGAATGTTGAAAAGGGCGGCGTGGCTTTATGTCTCAGCCAGCAAGGCCGTCGCAACGGAGAAGCTCTTGTACGTTTTGCTGACCGAGAGAGTCGGGACTTGGCTCTACGCAAGCACAAGCACCACCTGGGCCAGCGCTACATAGAGGTCTACAGGGCCAGCGGAAGGGACTTTCTCATGGTTGCCGGAGGTAACAGCTCCGAAGCGCAGACTTTCCTGTCCCGACACAGTGAACAAGGTGGACAGGTTATCATTCGCATGAGGGGACTCCCTTACTCCGCAACCTCCGAACAAGTTTTGAATTTCTTTAAAAACGGTGAATGCTGCGATGTTTTGGATAAAGAAAAGGGTCTTTTGTTTGTACACCAGGCTGATGGACGTGCAACTGGTGATGCATTTGTATTGTTTTCAAATGACGAAGAAGCTGGAAAAGCTTTAGCTAAACATCGCCAATGCATTGGTTCTAGGTACATTGAATTATTCAAAAGCACTACTGCCGAGGTTCAGCAGGTATTAAATAGGTCACTTGATCCTCGACCCACTGATCATGTTATTGCACCATACACCGACCCACTTCTATCTACAAATCTCACCACTATTATTAACCAACAAAATATGTTTGCTTATCCAGAAATTGCAGGTATGGCATCTATGGCTGCTATTGGACAAGCGATGAACCCCGCTATGGCCAATAATTTGACTGCCGGTCTAAACCCTGCTACTCTAGCACCAGCACTGGCCGCATCTGCGCTTCCTTATGGAAACGGTTTAGCCACACCCACCCCTTACCCGGGTCTCACACAAGCTATTGCCTCTGCAACTGTACCAACAGTGATTGCTAATGGAATGACAAATACATCTTCGCCAATACCTGGAATAGTTTTGCCTCAACACGTTATTACTTCTGGAACTCACCGCGATTGTATTCGTTTGAAAGGCCTGCCCTATGAAGCTACCGTTACCGATATCCTGAACTTTCTTTCCGAACATTCGAGAAACATTGTTTTTCAAGGCGTACACATGGTCTACAATTCTCAAGGAAGTCTATCCGGTGAAGCCTTTATACAGATGGATAGTGAGAATAGTGCTGAATTGGCTGCAATACTTAAGGACAGGAAGTTTATGATGGTGAACAGCTCGAATAAGAAACGCTACATAGAAGTTGTGCAGTGTTGCGGACAAGATATGAATTTGGTATTGACCAATGGAACACAGACTACGGCCATTAGTACCAGTGCGGCAGTCTCTTCACTAACCAATCCAATGATGGCTGGTATAATGGGTGCTGCTCCGGGTGTCATGGGTGCTGCTCCGGGTGTCATGGGTGCCGGTCCCGGTGTCATGGGTGCCGGTCCTGGTGTCATGGGTGCCGGTCCAGGTGTCATGGGTGCCGCTCCGGGTGTACTGGCGAATTTAACTCCAAACCCGATGATGTTTCAAATTCCTCGTCCAATTTTATCTCCAGGTGGAATATTATTCCCGAACCAAGCTTTATTTCCGCCGAGTACGCCTGGCACTGCTAATATGGCTGGTCTAATACCATCAACTAGTGCTAACCTATTAGCTGCCGGTAACCCAATTGCTAATGGTAACTTACAGTTACCACCGGCAGCATTGGCTCATCCTCCGCAGATAAGACCTCCTTTCAGTATGGCCACTCCAGGAGCCACCGCCCCCGTACCACCCGGATACATCTACTGGTATCCATCTCCTCCGGTATCTCCCCAGTCGCAGCCCTATTTTATTCAGCCAACCAATATTGTTCAAACAAAGACAACCACTACCACCACTGCTACAATTCCTGCTTCAACTGCTACTTCAGTTATAGTAAAAGGTCTTCCTTACTTAGCTCAAGCATCTGATCTTATGACGTTATTTGATGGAATATTTGAGATGCAGCCGGAGATAGAAATTATCAGAACCGCTGATGGCCGACACGTAGGTGAAGCCATTGTTACCTTCGGGACAAGAAACGAAGCTGAAAGAGCTATAATAGAAAGAAATAGGAAAATGGTGGGCCAGAGAAGTGTGGAATTGCACATGGCTTAA

Transcript

OFRAG00000014859.1

AAAAGTATAGATCTTACGTGTAAGATGGCCGGCCCATCACATTTGGTTGCACTTTTCGTCGCAACAGCTGGACAGAATGCTGAGAACCTTGGAACTGATGAAGAACAAATCGTATTATGCGTCTATATGCTTTACGATATAGTCAATAATAAGATCAACTCCGTACAAGTACAATATGTCAGTCCGAAACACAATGACATCGCATCTGAAATACTGCTTACTCCTGAATGTAAAATACAAACTGGTATCAAGGAAGAAGTCATTAGAACTGCTCCACCCCTAGAACAAGTTATTGAAGAGTTTGAGAGATTCGTACGAACTAAAGAAGTACATCCTGATCATGGAGGCAACTCATTTGTGTTTGTATGCGACGGACCATTACACTTGAGGATGTGCGTTCACGCGGAGGCAGCCAAGCGTAACATCAACCTTCCGCAACACTTTTACAAGTATTACGACATACGAAAAGCTTTCAAATCTTTTTATAAAATGCCCGTTGTGAACTGTATTAAAGATATGCTTGAATTTATTGGATTGGATGAGGATCCGAGCACAGAATATGGAGCCAAACATTGTCAGGACATTGCCTCTATATTACATCGATTGATATCAGATGGATTTCAATTTGAAGAGCCTTGCATTATCAAATCTAAACTTGAACAAGGAATATGCAATATCTCGGATGTAGTGGACGATGACACAATAGTAAGAGCTAGAGGCTTGCCATGGCAGTCATCCGACCAGGATATCGCACGCTTTTTCCAAGGCTTGAATGTTGAAAAGGGCGGCGTGGCTTTATGTCTCAGCCAGCAAGGCCGTCGCAACGGAGAAGCTCTTGTACGTTTTGCTGACCGAGAGAGTCGGGACTTGGCTCTACGCAAGCACAAGCACCACCTGGGCCAGCGCTACATAGAGGTCTACAGGGCCAGCGGAAGGGACTTTCTCATGGTTGCCGGAGGTAACAGCTCCGAAGCGCAGACTTTCCTGTCCCGACACAGTGAACAAGGTGGACAGGTTATCATTCGCATGAGGGGACTCCCTTACTCCGCAACCTCCGAACAAGTTTTGAATTTCTTTAAAAACGGTGAATGCTGCGATGTTTTGGATAAAGAAAAGGGTCTTTTGTTTGTACACCAGGCTGATGGACGTGCAACTGGTGATGCATTTGTATTGTTTTCAAATGACGAAGAAGCTGGAAAAGCTTTAGCTAAACATCGCCAATGCATTGGTTCTAGGTACATTGAATTATTCAAAAGCACTACTGCCGAGGTTCAGCAGGTATTAAATAGGTCACTTGATCCTCGACCCACTGATCATGTTATTGCACCATACACCGACCCACTTCTATCTACAAATCTCACCACTATTATTAACCAACAAAATATGTTTGCTTATCCAGAAATTGCAGGTATGGCATCTATGGCTGCTATTGGACAAGCGATGAACCCCGCTATGGCCAATAATTTGACTGCCGGTCTAAACCCTGCTACTCTAGCACCAGCACTGGCCGCATCTGCGCTTCCTTATGGAAACGGTTTAGCCACACCCACCCCTTACCCGGGTCTCACACAAGCTATTGCCTCTGCAACTGTACCAACAGTGATTGCTAATGGAATGACAAATACATCTTCGCCAATACCTGGAATAGTTTTGCCTCAACACGTTATTACTTCTGGAACTCACCGCGATTGTATTCGTTTGAAAGGCCTGCCCTATGAAGCTACCGTTACCGATATCCTGAACTTTCTTTCCGAACATTCGAGAAACATTGTTTTTCAAGGCGTACACATGGTCTACAATTCTCAAGGAAGTCTATCCGGTGAAGCCTTTATACAGATGGATAGTGAGAATAGTGCTGAATTGGCTGCAATACTTAAGGACAGGAAGTTTATGATGGTGAACAGCTCGAATAAGAAACGCTACATAGAAGTTGTGCAGTGTTGCGGACAAGATATGAATTTGGTATTGACCAATGGAACACAGACTACGGCCATTAGTACCAGTGCGGCAGTCTCTTCACTAACCAATCCAATGATGGCTGGTATAATGGGTGCTGCTCCGGGTGTCATGGGTGCTGCTCCGGGTGTCATGGGTGCCGGTCCCGGTGTCATGGGTGCCGGTCCTGGTGTCATGGGTGCCGGTCCAGGTGTCATGGGTGCCGCTCCGGGTGTACTGGCGAATTTAACTCCAAACCCGATGATGTTTCAAATTCCTCGTCCAATTTTATCTCCAGGTGGAATATTATTCCCGAACCAAGCTTTATTTCCGCCGAGTACGCCTGGCACTGCTAATATGGCTGGTCTAATACCATCAACTAGTGCTAACCTATTAGCTGCCGGTAACCCAATTGCTAATGGTAACTTACAGTTACCACCGGCAGCATTGGCTCATCCTCCGCAGATAAGACCTCCTTTCAGTATGGCCACTCCAGGAGCCACCGCCCCCGTACCACCCGGATACATCTACTGGTATCCATCTCCTCCGGTATCTCCCCAGTCGCAGCCCTATTTTATTCAGCCAACCAATATTGTTCAAACAAAGACAACCACTACCACCACTGCTACAATTCCTGCTTCAACTGCTACTTCAGTTATAGTAAAAGGTCTTCCTTACTTAGCTCAAGCATCTGATCTTATGACGTTATTTGATGGAATATTTGAGATGCAGCCGGAGATAGAAATTATCAGAACCGCTGATGGCCGACACGTAGGTGAAGCCATTGTTACCTTCGGGACAAGAAACGAAGCTGAAAGAGCTATAATAGAAAGAAATAGGAAAATGGTGGGCCAGAGAAGTGTGGAATTGCACATGGCTTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00929	RNase_T	Exonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR013520	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR047201	Domain	ERI-1-like, DEDDh 3'-5' exonuclease domain	Interproscan
IPR050666	Family	Epithelial Splicing Regulatory	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000175	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-