Gene detail

Detailed information of OFRAG00000014012.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000014012.1	MATRIX METALLOPROTEINASE	tig00004131	32640	50750	-

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000014012.1

ATGCAGTGTATGGTTTGCGAAGAGAGAGCAAATGGACGCTATTTCGGAGCTATCGTGTGTCTGCCTTGTAAGTCGTTTTTCATACGCTGTTCAAAAGACCTAAGACCTCGAACCCAGTGCATATCCGGAAATAACTGTGATGTTATAGGAACAGTAAATCGTATGCACTGCCAGTTTTGCAGATTTCAGAAATGTATTTCGGTGGGCATGAAACGAAAAGAAAAACCGGAAGTGATTCAGGCATTGGAAGGTCAACAACTGTGTGAAATCTGTGGCGACATCGCGAACGGTATACATTTCGGAGTGGTCAGTTGTGAAGGCTGTAAGAAATTCTTCCGCCGGGCTCTGAGTGAATTTGATAGCTACCGATGTCGTTACGGTTTTGCGTGTCGTATGAATCCACGAACTCGTAACGAATGTCGATACTGCCGATACCGGAAGTGCATCATGGTCGGAATGTCGAGACAAGCGATTCGAATGGGTAGGCCAAAAAAGAATATATTCCAAAGTCGATTGCCAAGTACCAGAGATATGACGCAACGATATGATGCAAGACTTGATAATACCGATGGAGAGACGAGTTCGAATTCTTCTGGATATGAAGTAGAGGATAGGTTTCTCAATACTCCAGAACCAAATGCCACATTCGAAATAGATGAGCTGTGGCAGAGTAATTTAGAATTTACACAGAATATAGATATGGATGAGGTAAATGACATTCTAACATCTCTAGGGACTCAGATAGTGATCGTGGCAATTTCAGCATTTGTCGATATTTCCTACGAAGTTTCCGACGAAATGCCAACTATCCAACAAATCAATTACTTGAAGAAATACGGTTACTTGGTAAATCGGGATAAAATCGACAATGCAGCTGATGTTAATGGTATCAAAAACATTTTTATGGCGATTTGTAAATTTCAAAAATACTTTGGACTCCGAGTAACATGTAGAATGAACGAAGAAACAAGTGACATGATGAAGAAACCTCGTTGTGGTTTCCCGGATCTTTATATCAAAAACAATCAATTGGCAAATTATAATCTACAAGGTAGCAATTGGCCTTCAAAACATTTGACGTGGAAGGTTTCGCAGGGCACCAAACAAGTCACTGATTCGGAACTGCATACCGCCATCGAATACTCGTTTAACGTATGGGCGGAGCAGTGTTCTCTCACATTCGAAAATCGTCGATCTGGTGACGTCGACATCGAGATTGGATTCTACACAGGCCACCATCTGAATGAGGATCCTGACTCAGCATTTGACGGAAAAGGACAAACTCTTGCGCATGCATTTTTCCCAATTTCCGGTGGCGACACCCATTTGGACGATGATGAAGTCTGGGGCGTAAAGAGAAGCGATGGAGATTTAGCCATGAAGAGTTTAGTCGTTGTACTTGTTCACGAGTTTGGGCATGCCCTTGGATTGCGTCATGAACCAAATGTTGGCGACTCAATAATGAGACCATTTTATGGCGGCTGGTCAGAAACGGTTACTCTGAGTGCGGACGACATCGCGGCCATACAAGTTCTTTATGGAAAGAATGAAATCACATCTACTCAAACTAATGCAAAAATTACTACAACTGAACCTACTACCACTACTTTTGTAACTACAACCAAAACGACAGCACGTCCCAGTACAACTACTAAACTAACGACAACTACCAATGCTAAAACTACTACAACATCTTCTGATGATAAAGTTGATTTTTGTAAAAATCCAAGAATTGATGCAATATTTGAATTCCGCAGAACCAACTATTTCGCTTTCAATGGAAACTCCGTGATGTTAATCCGCATGAGGTATAGTCCTCGTGTATTCCTTACGAAATACTTGTTCCCGGGAACATTACAGTTTGATCGTAAGATAGATGCTGCGTTTGCCACTCCAGCTCGATACGGATGGGTTTATGGCTACAGAAGGATTAGATACGCGCAAATTGAAGAGGAGAAAGTGTTTTTATTCCAGGGAGAGAAAGTACACGTTTTTATAGTGATTAACAGAAGTTTTGTGGAGAAATATGCGTTGAAAATTAGTCAAGTGTTCGTAGGAATTCCATCAAATCTCGACTCTGCCTTCATCTGGAGTGGCAATAGGAATATATACTTCACTAAAGGCAAACTGTTTTATCGGGTAAGCAAAGCCGGCAGTATATTTAAGAAAGTAAGCTACTTCCCGAAACCATTAAATCTCTGGAATGGCATTCCTAGCGAGATTGATGCGGCGGTGTACCTAAGAAGTTATGGAACGACGATGTTCTTTAAAGGAGGACAGTATTATATGTACAGCGACCGAGAATGCCAGGTATCTCGACGATATCCACTTCCCATCAATAAAGATTGGTTTGGATGTAAATCTTTTAGTAGATTACAATCAGTAAATACTACAATAGAGAGCGGTCTTAGCAAAGCGATTTATACAATTACCGGAGGAATGGAAGAAATAATTGAAAATACACCTCCTCCTCCAACCAATGAAAATGATGTAGCTAGATCTGATGTAGAAGATATATCGGACGGCTTTAATGAACTTAACGAACCCTGGGAGAATATAGCGAAAGAGATAGAAACTAGTTCTGCTTCAACTTTTAGGATAATTCCATTATATTTCATCTCAGCAATCGTAATGCAATATTTAAATTATAGATATTTAAATTAA

Transcript

OFRAG00000014012.1

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	GCNF-like

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00045	Hemopexin	Hemopexin	Repeat	Interproscan
PF00105	zf-C4	Zinc finger, C4 type (two domains)	Domain	Interproscan
PF00413	Peptidase_M10	Matrixin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001628	Domain	Zinc finger, nuclear hormone receptor-type	Interproscan
IPR001818	Domain	Peptidase M10, metallopeptidase	Interproscan
IPR006026	Domain	Peptidase, metallopeptidase	Interproscan
IPR013088	Homologous_superfamily	Zinc finger, NHR/GATA-type	Interproscan
IPR018487	Repeat	Hemopexin-like repeats	Interproscan
IPR021158	Binding_site	Peptidase M10A, cysteine switch, zinc binding site	Interproscan
IPR021190	Family	Peptidase M10A	Interproscan
IPR024079	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR033739	Domain	Peptidase M10A, catalytic domain	Interproscan
IPR036365	Homologous_superfamily	PGBD-like superfamily	Interproscan
IPR036375	Homologous_superfamily	Hemopexin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10201	MATRIX METALLOPROTEINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0030574	Biological Process	collagen catabolic process	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-