Gene detail

Detailed information of OFRAG00000013889.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000013889.1	T-BOX PROTEIN-RELATED	tig00003996	78069	105936	+

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000013889.1

ATGGAGTACTGTGTAAAGGAATTACGCGATACGTTTCGAGATGAATCGAGAACAACGGGAGGTTTGCGACGTTTACTTTTGAGCGCCGCTGTTTCCGCCGGTAAAGACAAGATAGACAATGGGTATCAAGTACGACAGGTAGCCAGGTACTTAGATTTCATAAATTTGATGAGTTACGATTTTCACGGCAAGTGGGAAAAGAGAACAGGACATAATAGTCCATTGTTTACTCACATAAATGACAATGGGCCAGACATCCTACTGAACCTGGAGTTCGCTGCAAAATATTGGTTGGAGATGGGAGCTCCAGCTCGTAAAATAAATATCGGCTTGGCATTTTACGGAAGGAGTTTCACTTTGAAAAAGGAACTAAAAGATACCTCTACATTAATTGGACTTCCTGTAGATGGAGGTGGAAAAGCAGGACAGTTCACCAATGAACAAGGCTATCTTGCGTATTATGAGATTTGCGAATTATTGCAAGACGGTGGTCGTGCTTACTGGGTAGATGAACAGTCGGTTCCCGTTATGATAAAGGACCGTATGTGGGTCGGATATGAGGACAGGAAGAGTCTAACAATTAAGGTGAGATGGCTAAAGGACCAGGGATTTGGTGGTGTCATGATATGGGCACTTGACCTCGATGATTTCACCGGAAACTCGTGTCATAGGGGGCGTTACCCACTACTGACCAGTGTCGTGCAGGCACTTATAGGGCACGTTAGAGTACCACCTTCAGTGTCGCATGATGTAATATTACGCAATACCGAGTCGACACCAATTTATCGCAGTCGTGTATCTCTACGGGAAAAATACGTTACACGGATATATCCACTTCCGGGCATGGTTGACGAAGACGGGAGGTTCATGCCAAATGGGCATTTTTCCGATATTGGTGGAATCTCACAGGTGGGCGGAGCTAACGTTCTCGACCAATTGGATTTGAAGATGCTAGATTATCTGCGTATGGAATTTGAATCCACAATATCTGGAGTAAGACGGTCAAATCAACAATCTTCTAGGCGATTAATTCAACGCCTCCGTAACGCCCACATCGGTTACGCCTATTACGAGGAGTGTCAGGACACACCGACGTGTAGGCACGCCTCAGACACGCCCCTCGATTACGATTGGTCGTCGAGCTATTGTTATATGTTCGAGGCCGACACAATGGCCTGCGGTGGAAGGGAGAGGTCAATATCGGCGGCGGCTTCGTTCGCTGGACATCCGGGTCTGGTAACCCCTCCTTCGTCGGTACCTCCGCATACTTTCCCGTTTTCCGGATTCCCCGGACACCAGGACACCGCGTACCCAACTACTGGTCATCAAGCTAGTTCTTACCTCGGAATGAACAAAAGACACATATCAACAGTATCATTGAAAGATGGTCGAATTACGTCATCGTGCCTGGAGGGTAATAATGGATCGACTAATAATAATAAAGATAAAAATATAAAATTGAAACTTGAAAACCGAGAACTCTGGCAGAAATTCGCTTCATTTGGAACAGAAATGATAATTACGAAAACAGGAAGACGCATGTTCCCAACTTATAAAGTAAGTATGGAAGGACTAGAACCTACCTCAAAGTATATACTTCTCATGGATATTGTACCGCTGGACGATTGTCGTTACAAATATCATAACTCGGAATGGGTTGTCACCGGAAAAGCTGAACCCCATATGCCTGGACGACTTTATATTCACCCCGACTCTCCAGCCGCTGGAAATCATTGGATGAAACAACCCATCATGTTTCACAAACTAAAATTAACAAACAATAACCTTGACCAGAACGGACACATCATACTGAACTCGATGCATAAGTACCAGCCCCGGATGCACATCGTACAAGCAAACGATATCTTCACAATGCGTTGGAACAGTTTCAGCACCTACGCCTTCGAAGAAACCTCGTTCATCGCCGTAACCGCCTATCAGAACGAACAGATAACTCAATTGAAAATCGACAACAATCCATTCGCCAAAGGGTTCAGAGATAATGGGATGGGAAGGAGCCAGTCAAATTTCCCGAGGGACAATAGGATGACCATTAAACGACCCCTGTCTACAGATGATCACCCAGTTCAACTCGATAAAAGAATTAAACTGGAGAACCTGCAGAGGGGACACCAGCCAATCCAGGGTCTGGAGCACGTGACGAGTACGTGCAACGACGTCACAGACCTAACTTCCGGTAGAATGCGTACGCCCCCGAATACGTTCTCGCAGGTCCACCACAACCCCACTCCGAGTAGCGGCCTCACGGGTCCGTCGTCCGCCCAACCCGCCGGCCCAACGAGCAACTGCTACGCGTACCGTTCCTCGGGCTACGGCGCATCGGCCAATAACCCGTACATACCTTCCCCGTACGTGACCCCGCCGGCCGGTACGGGCACCGGTACCGACTTCTACGCGCCTTACGCTCCGGTGACGCACACGTCTTTCCTGAATTTCGGTGCCGGCGTATCTCCGCCATCTTGCCAAATAACGGCGGGGTCGATGGTTGGCACGCCGTCGACGCCCGCCTACCACCACCACGCCTACCACCACCACCACCACCAGTTGACCGGAAGTGCGGCGGCGGCGGCTCAGAGTCACGTGAACTCGCACGCCACGTTTGTGCAGAACTCGCCCCCGTACGCCTCGCACATCACGAATATTATGAATTTCGGTACGGCACCCACGTTCGCCTCGAATCCGTTGGTGTAG

Transcript

OFRAG00000013889.1

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	T-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00704	Glyco_hydro_18	Glycosyl hydrolases family 18	Domain	Interproscan
PF00907	T-box	T-box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001223	Domain	Glycoside hydrolase family 18, catalytic domain	Interproscan
IPR001699	Family	T-box transcription factor	Interproscan
IPR002070	Family	Transcription factor, Brachyury	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR011583	Domain	Chitinase II	Interproscan
IPR017853	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR018186	Conserved_site	Transcription factor, T-box, conserved site	Interproscan
IPR029070	Homologous_superfamily	Chitinase insertion domain superfamily	Interproscan
IPR036960	Homologous_superfamily	T-box superfamily	Interproscan
IPR046360	Domain	T-box transcription factor, DNA-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11267	T-BOX PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001708	Biological Process	cell fate specification	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008061	Molecular Function	chitin binding	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-