Gene detail

Detailed information of OFRAG00000013559.2 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000013559.2	DEK PROTEIN	tig00003802	10249	18960	-

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000013559.2

ATGTCAACAGTTGAAACTATTCCCCAGATAACATCTACTGAGTCAAAGAAAACCTTGACCGACGATAACGACGCTGCCTCGTTAAATGGAGAAGACACAGAGACTCCGATCACAATAAAATTAGAGGACCGACTAAAACAGATGAAGGATTGTGCTGGCTTACCCGCGCTCGTTGCAGAGTCTGTCGCAACTGTAAAGTGCCCCGATAAAGCAGACACTGCGGACAAGAGTTGCCATGGCAACGCCGCCGCCTCTAGTGCTGTACAGACCTCTAAAGATAAGCCCTCTTCGGCTTCGAGTGATAAACCCTCCTCGGCTTCAAATGATAAACCCTCCTCGGCTTCAAATAATAAGGTCTCAGCCTCAAATAATAAGGTTTCTTCAGTTTCAAGTGATAAGGTCTCAGCTTCAAATAATAAGGTTTCTTCAGTTTCAAGTGATAAGGTTTCAGCTTCAAACGATAAGGTCTCAGCTTCAAATAATAAGCCCTCCTCAACTTCAAAGTCCTCCGACGAGGACAAACTGGTCAACGGTTCCACGGCGGACGACCTAAGTGAATCCAAAGCCGAGAAGAAAGCTGCAATCGACGGCGTCAAGAACGCCAAAGGAGTAAATGCTGAAGAGATTCGTGGAACCGAAGGCAGCACAAAGAAACTTGACGTCGTGTCGGAGAAACGCAGCGAAGGGAAAGGCGAAGATTTGACGCAGGAAAGCGACGACGACAACGACGACGAGAAAAAGGCGAGTCAAACTGACGAACTGGGAAACGACGCCAAAGAAAACGGAAGCGACATTAACGATAAGGGAAGCGACGCGGAAGAGAAGGTACGGGACCCGGATGAAAAAGCTAGCGATTCGGAGAAGAAGGAAGAAGAAGAAGTAGAAGACGCCGAGAAACAGGAAGTGGTGACTCCACGAAAACGCGGCCGGCCCAAGAAATCCAGCACAATCGCCGGCATCAAGACTAAACGAGAAGCTGATAACAGTCCTAAGAAGCCGATTAAGAGCAAGCGCCATTATGCACCCAGCGATGAAGAACTTCCCGCCGGCTTATTGGAGTTACCAAAGACTGTAGAAGACGGTTCGAAACGTATCAGAAAGAAGACCGAACGCCTGGAAACTAGCTACGAATCTCCTTTCAAAGCCGTTGAGGTGCTCTTACCAGGAAGTGGTCAAAAGCTGTGCGACTTCGAGCATGTTGACGCCGCTCTCACAGACGTGCACCCCTACGAACTGAAACCACTTCATCGTATCGTCTTTCAGCGCTTCGGGAGTTTACATGAAATACGTCGAAATTTACGACAGTTCAACGGTTTCGCATTTGACGCAGAATCTCCGCAGTACGCGAAACGAGTGCAACTCCTGCAAAGGATGACCTACACTCAATTGAAGCGAGTTTGTGACATATTTAAAGTTGAGAAATCCCTGAGTAAAGATGACCAAGTGGATACGTTAATTTCATTCCTGAGGAATCCGCAATTCTCTGATGAATTGCCAAGGAAAAAGACCATTACCACTCCAAGGGTCAAGAATACTAGCAAGGATATTTCAAACGATGGCAATGAATCTAGTTCTTCAAAAGGAGGTAGACCAGATAAACCTGTAACTTTGACCCCAAATGGTCACATTCGTAAGAGACGTAGAACAAAGGCTGAACTTGAAATTGCCAGATCTACTGTCGTTACTGCCAATAAGGTGTCAATAGAACCAGACTACGATTCAGGTTGCGGGGAGCCCCCTAAAAAGGTTTCTATAACTCCAACTGGTAAGGTACGTAGACGTCGCCGTACCAAGGCTGAAATGGAGCAGGCAACTGTTGATAACTCCAGTCAAAAGAGTGAAGATGCAACTGAGATGCAGCCTAAGAATGAATCTGCCCCTGAAAATAAACCCATTATTAAAACCTCAAAGCCGGCCAGGAGCTCTCCGAAATCTGTTACCAGCAAAACCCCTGCTAAGAAAACGTCAAAAAAAGTTGAAAAGATTCTGCCCCCTTCGGACGACGACCTTAAGGAAGAGATCAAGAGAATCTTGTACGGAGCCAACCTCGAACAGATCACAATGAAAACTGTTTGTCGCAGTGTCTACGACAAGTTTCCTCAGTTTGATATCACTCCTCGCAAGGACTTCATCAAGGCCACCGTGAAAATGATCATCAAATAA

Transcript

OFRAG00000013559.2

AGATATACTTGCGTGTTCATAATGTCAACAGTTGAAACTATTCCCCAGATAACATCTACTGAGTCAAAGAAAACCTTGACCGACGATAACGACGCTGCCTCGTTAAATGGAGAAGACACAGAGACTCCGATCACAATAAAATTAGAGGACCGACTAAAACAGATGAAGGATTGTGCTGGCTTACCCGCGCTCGTTGCAGAGTCTGTCGCAACTGTAAAGTGCCCCGATAAAGCAGACACTGCGGACAAGAGTTGCCATGGCAACGCCGCCGCCTCTAGTGCTGTACAGACCTCTAAAGATAAGCCCTCTTCGGCTTCGAGTGATAAACCCTCCTCGGCTTCAAATGATAAACCCTCCTCGGCTTCAAATAATAAGGTCTCAGCCTCAAATAATAAGGTTTCTTCAGTTTCAAGTGATAAGGTCTCAGCTTCAAATAATAAGGTTTCTTCAGTTTCAAGTGATAAGGTTTCAGCTTCAAACGATAAGGTCTCAGCTTCAAATAATAAGCCCTCCTCAACTTCAAAGTCCTCCGACGAGGACAAACTGGTCAACGGTTCCACGGCGGACGACCTAAGTGAATCCAAAGCCGAGAAGAAAGCTGCAATCGACGGCGTCAAGAACGCCAAAGGAGTAAATGCTGAAGAGATTCGTGGAACCGAAGGCAGCACAAAGAAACTTGACGTCGTGTCGGAGAAACGCAGCGAAGGGAAAGGCGAAGATTTGACGCAGGAAAGCGACGACGACAACGACGACGAGAAAAAGGCGAGTCAAACTGACGAACTGGGAAACGACGCCAAAGAAAACGGAAGCGACATTAACGATAAGGGAAGCGACGCGGAAGAGAAGGTACGGGACCCGGATGAAAAAGCTAGCGATTCGGAGAAGAAGGAAGAAGAAGAAGTAGAAGACGCCGAGAAACAGGAAGTGGTGACTCCACGAAAACGCGGCCGGCCCAAGAAATCCAGCACAATCGCCGGCATCAAGACTAAACGAGAAGCTGATAACAGTCCTAAGAAGCCGATTAAGAGCAAGCGCCATTATGCACCCAGCGATGAAGAACTTCCCGCCGGCTTATTGGAGTTACCAAAGACTGTAGAAGACGGTTCGAAACGTATCAGAAAGAAGACCGAACGCCTGGAAACTAGCTACGAATCTCCTTTCAAAGCCGTTGAGGTGCTCTTACCAGGAAGTGGTCAAAAGCTGTGCGACTTCGAGCATGTTGACGCCGCTCTCACAGACGTGCACCCCTACGAACTGAAACCACTTCATCGTATCGTCTTTCAGCGCTTCGGGAGTTTACATGAAATACGTCGAAATTTACGACAGTTCAACGGTTTCGCATTTGACGCAGAATCTCCGCAGTACGCGAAACGAGTGCAACTCCTGCAAAGGATGACCTACACTCAATTGAAGCGAGTTTGTGACATATTTAAAGTTGAGAAATCCCTGAGTAAAGATGACCAAGTGGATACGTTAATTTCATTCCTGAGGAATCCGCAATTCTCTGATGAATTGCCAAGGAAAAAGACCATTACCACTCCAAGGGTCAAGAATACTAGCAAGGATATTTCAAACGATGGCAATGAATCTAGTTCTTCAAAAGGAGGTAGACCAGATAAACCTGTAACTTTGACCCCAAATGGTCACATTCGTAAGAGACGTAGAACAAAGGCTGAACTTGAAATTGCCAGATCTACTGTCGTTACTGCCAATAAGGTGTCAATAGAACCAGACTACGATTCAGGTTGCGGGGAGCCCCCTAAAAAGGTTTCTATAACTCCAACTGGTAAGGTACGTAGACGTCGCCGTACCAAGGCTGAAATGGAGCAGGCAACTGTTGATAACTCCAGTCAAAAGAGTGAAGATGCAACTGAGATGCAGCCTAAGAATGAATCTGCCCCTGAAAATAAACCCATTATTAAAACCTCAAAGCCGGCCAGGAGCTCTCCGAAATCTGTTACCAGCAAAACCCCTGCTAAGAAAACGTCAAAAAAAGTTGAAAAGATTCTGCCCCCTTCGGACGACGACCTTAAGGAAGAGATCAAGAGAATCTTGTACGGAGCCAACCTCGAACAGATCACAATGAAAACTGTTTGTCGCAGTGTCTACGACAAGTTTCCTCAGTTTGATATCACTCCTCGCAAGGACTTCATCAAGGCCACCGTGAAAATGATCATCAAATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08766	DEK_C	DEK C terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014876	Domain	DEK, C-terminal	Interproscan
IPR044198	Family	Protein DEK	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13468	DEK PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006325	Biological Process	chromatin organization	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:2000779	Biological Process	regulation of double-strand break repair	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-