Gene detail

Detailed information of OFRAG00000013437.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000013437.1	CAVEOLIN	tig00003647	121096	144379	+

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000013437.1

ATGGAAGATTCTGGTACTCATCTGCTTATAAGTAGAGACGTGCGATCCTGCCGACAAATTCTGAAAGAAGAGTTCCAGATACGTAAATTCGGTCATCATTTTGGAGATGATGAAAGATATTTTTACAAACCATTGTGGAGAATGCCATCTTTTCTTTACATTCTCGGCCGAGCCTTCCTTTCTATTTATACATTAGTGTGGTTATCTATTACGGCTACTCATCTCTCTAGAATAACAGACCATCCGATGGCAAAATACCCATGGCCTGTGTGGATGACTAATTGGTCTTATTTTACATTGACCTTATTCTTCTTTCAGTCTTTCGTTTTGTCTATTGCAATGTGCAAGAGATCTGGCTATTTGAATCTGTCCTCTGACTCACGACTTGCCTGGTACCTGAGACTCGACTGGACACTGTCCTCGATGATACCAACAATGGCAATAGTGGTCACTATGGTCTACTATATCGGACTCTACCCTCAGATTCATCATATTGGATACCTCCATAATCTTGACGACCTACAATTACATGGCATCTCGCTTTTACTCATTGTTATAGATTTCATATTCTCTGCACGACCGGTTAGAATACTTCATTTTATTTATCCTGCTTCATTGGGTTTAATTTATATCATTTTCACTGTCATTTATTGGAGTTTTGACCATACCCGAGTGCTCTATCCAAAGATTGTAGATTGGAATCACCCAGGTGCTACCTTTGGGATATGTTTTCTATTGATTTTCATTGGTGCTCCATTTCTTCAATTGTTCTGTGATGTTCGAAACCGCAGGTCAAGATCTTGGACAGTCGATGCTCGTTCGGAGTCGAGATCTTCTGAAAGGGAATGCAATCGTGGCCACAGGTCGCCGTTATCCGACAGCGACAGGTCGAGGGATAGCCCGTTACCGATCAAGGGTTGGGGTCAAAGGCGTAGCTACCATGACAATAATAACGGAAATATGGCGTACTTCAGTAGCGGCTACCGAGGTGCGAATAACGGGTACAGGGGTAGCAATAGAGGTTACCGGGGTAGTAAAAGAGGCTTCAGGGGTGGCTACAGAGGCGACTATAGAAGTTTTAACAACGGGTACAGGATGTGTAAATACAACGACAACGATATCGGCAGGGGTAGGTCGAAGCTAAGGAATAGCAAAGGAAGGTCGAGTAATCGTAATAAAGACAACGACGAGGACAACGACTCGCACAGTAGTGACAGATCGACGCAGAGTTACCGAGGCGTGACCAAGGGCAGAGCTAAACGCAGCAAATCACCGGACAGCGATAGTCACCACGAAGATGACGATAATTGTGATAACAATTCGTCTAACAAAAAACGCCGGGAAGTTAGGTCGCGGTCGGGAAGTTATGATTCAGACAGAAGTTCTAGGTCCGGTAGTTGCGATAGGAGGAAACATTCGAGGAGTCGCTCCATCATCAGTTACGCTAACAAGAAGACTAAGGGTAATAAGCCTTCAAGGTGTGTTTGCATTTTCGGACTTTCACCGATCACTAAAGAAAAGGATTTATTTGAATGTTTCAAGCATTATGGTTGGATAATGGAAATTCAAATTATCTACAATCACTACACGAATCGATCAAAAGGATATGCGTTCCTGTACTATAGGGACAAGGGGGCTGCTATCATGTGCTACGAATGCGCTCCGGGCATGAAAATAGACTGTCGTAGCATCAGAACAGAATATTCTCCAAGGGGTGACAATCAGAGGCCGGTAACTTCTTCGGAAATGAGGAAACTAATCGATCGAGATGACGGAAATCAGAAATTCTTACAATTGAGATGGCACTCAGGAATGAGTAGTTTTCCGGTAATACCCCGCGAAACAATGAACTCCATGTACCGTGGGAATTGGCACAATAACAATCAATACCAAAGCAGACCGAGGTCAAAATCTAGGAGTCATTGTCAAAGACACCGCTCTTACTCGCCATCCTTATCTCGTTCAAGGTCTTGTTCCAGAGATAGATCTAGGTCTAAGTCGAGGTCCCGTTCACCGTCTCTCAACGCATCCAGTTCCCCGAGTAGACACAGCTCGCCATCTGCCGGCTGGCAGATTACAAAATCACCGCCGCCAACGGAAACTTACGAGTCAAAGGTGAAGCGGACGTCTAGGTCAACATCGCCAATACGCGTGTCAAGGATACGGAAGGCGACGAGGTCACCTTCTCCTATGGATCAGAGGTCGGTTTCGCTGAAGCAAAAATACTCGGAATCTCCCCCGTCCAAGAAGCAACGTACCAAATCTCCGGAGCACGTCGAAAAAGAGTCCAACAAAGGACCCGATGCATTTTCACGAACCGACCAAATCACGAAACCAATGGGGATCCCGGTGAATCCAATGCTAACATTCTCAAATAACAAGTTGCCATTTACACCAAGCATTTCTTTGTGCTCTCAACCCAGTTCTTCTAAAAAATGCACAACATATGAAAACAATGGAAACGAAAACAACTGTAACTTGGTATTAAGCAACAACACTGTAAATTTACCTTCGATGAGAAATGGCAGAAATATTACATCACTTATTGAAACTATTAAAAAACCGGCAACAATTACAAATTATGGAAATTCTGAAAATTCTGCAGATAAATTGGTTGATAGTAATTTGAATAATAAGTGGACACAACAAGGACATAGGCAGGACCTTGCAAGTAATGTGACAGCTACATACAATGTTCGACAAGACAACAAATCTACAGCTTATGATCCCAACTATCCATCTCAAACTAAACAAGAAACCGCACATGGTATTGCATCTATAGATTACGAATTGGAAGATATATTCGGTAAGCCGTGTGATATTAATAATAAACAAAATAAGGACGGCATTGGATACGAGGTGTCCACAGATTCATGTAAAGAAATTTCTGAAATTAAACTTTCTACATTGTCAATATTGTTCGACGAATGTGATACAATAAAGTTAATTAGCAACCGAGTGGGCGTGTCCGGACTTAACGATCTGACCGCTGTAGTCAATCGAGGTTATATCGTCCTTGACTACGACTGCTGCCTGGATAGAAGTCATTCGCAACTCATTACTGCTTCCTTTTCCTACACGTTCCGTTTTTACTCACATTTAACCCTAATCATGTCTGTTGGAGAGAAATGGGCTGCTGATCCCGACTTGAGCTCAAGGGATCCCAATGAGCTTAACCAACATCTCCAGATCACTTTTGAGGAGACTATCGGCGAACCCGACCACACGCACTCCATGGACTGCGTCTGGAAGTATTCCTACAAATGTTTCAACTTGTGGAAAACGCTTTGCTACCTGATCCTGACAACGTTGTGTGGAATTCCCATCGCGTCGTGCTGGGGCTGCACTTTCGCCTGTATCGCCTTCAAGCACATCTGGCATATGGCTCCGTGTATGAGAGCCTGCGAGATCAACTTGTTTATGTTTCGCAGGTGCTATAGCAACATCATCGGAGCCTGCATCGAACCGTGCTGCCAGTCCTGCGGCATGATCTTCAACCAGTTCAAGAAGTAG

Transcript

OFRAG00000013437.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF01146	Caveolin	Caveolin	Family	Interproscan
PF21534	Rost	Protein rolling stone	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR001612	Family	Caveolin	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR049352	Family	Rolling stone	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10844	CAVEOLIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0005901	Cellular Component	caveola	Interproscan
GO:0060090	Molecular Function	molecular adaptor activity	Interproscan
GO:0070836	Biological Process	caveola assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-