Gene detail

Detailed information of OFRAG00000011843.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000011843.1	THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN-RELATED	tig00002507	44803	148518	-

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000011843.1

ATGTCTCGCTCTGGCGACCGAAATGTAAATCTGGTAAAAAAAGTCGTTAAGATCGCATTAAGTAGTTTCGTCTCCGCGATTGCCATGGTAACCATTGCGGGAGATACGCCATACTACGGACTAGCGTGTACGATAAACAAACTACCGCACGATATAGTGCGAAACAATGTACATAAAGATGAATCACCAATATGCGCAGTATCTAACCAAAATATCATAGCAATTACATCTCACCGGTCTAATTTTACAATCTCTAAAATCCAATTTAATAAAACTGATAACCGAGATAATTTCGAAAACAACTACATGCTCGTCGTCTGCGACATCGACAAGCCTTCGAAGTTGTTCTGCGTGGCGTCGTTGCGCCACCCGCTCACGCTGCTCAAGTGGTCGTACGACTCCCAGGTGTTGCTGACCGCCGGCTCCGACGGCCACATCGTCGCCTGGCAACGCAAGGATGAGCTTATCAACGATTGGAAAATAGCTCACAACAATTTACTACAAGGCGAAAAAATCATCGCCATGCATTTTTTGTCAAATATGGTCCAGTACAAGTACGCCGAGGATAATAAACGCGACCAGAACTACACGACCAAGTTTCGTCGGTGCAAATATCGACCTACGTTGACCTCGTTTGGAGGGGTGCCGGCACCCGGATACATGTGCATTACGTCGTCGGGATTGTTCTCACTTGTGGTTATGGATGACTCACCGAAGAAAAATCACTACACCAACACTATGTGTTTAGGTCAGAGTCGACAATCAATACGCTTCGCTGATTTCACTGCAGATGCAAACTGCCGCAATATACACATTGTGGCTGGACTGACCAACAAATTTGAGTTGAATATGTACACTGTGAATCTGACTTGCGTACCTACGTCCGAAAGCCATCTGCACTGCAACATCGTGATTGAAACTGGTGTAGGCCTACGTCCTTTCAACGACGACTCCTCCCAACACGAGAAACAGATCACCGGGGCAAAGTACGTACAGGAAGACGACGCCTCTGACCTTTTGTTGACCTATAGCAGTCACACGGGAAGTCAGGTGGAGCTGTGGCGCATTAAGAAAGTAATCGTGCCGTTGCACCCGCTGTTGGCTTCGAAGGCGACCGGCGATTTCTTTGTTTCGCAGTGGGAACGTTGTCGCGGATCTGTGAAACACACGAAGCAACCGATTGCGTTGGCAATGCCTCGATTACCTTACACGGCTCCGAGTTCGGCTTCAATCACCAACGGTGGCGACGATGAAATCAATGATCGACTGCTACGATACATTGCTATCAGCTATTCTGATGGAACAATAAAACTTCTTAGTTACGGAGAGGAATTGAAATCTCTGGCGAACTCAATGTTTGACGAGGGTCCCTTGGATGTGTCAAATCCAACTTCAGTGAATAGTGATCAACCTCGCCACCTAGTGTCAATTCAACAGTCATTGTCTGGGGCTTGTCTTTTGGGTATTGACCAATCAGCTTCTCTCTCCTGTATGAAGTCTATGAATACTAGAGATTCATTATGTCAGATATCAATAGATACTACAGTGTCTCTATTGGAATATGATTTGGTATCGGGATTTGAATCTTGGGATGTGATTTCCATAATAAAACCTGAATCCGCAAAAGAAATTCTACAGAATCTGTCTGCAAACTATGACTATACAATATCTCAGAACCAGATGCTTCATCTGTCCATGCATTACATGAGCATATATAGTCAACTGGATGATATGTGTGATAACTACGCCCAGATTGAGAACCGGGTGTCGGTGTTTAGCACTACAACTGACATTATGGTGTTTTCTATCCTTAACTCCGCACACCAATTGCTGCGGACCAAGTCTATTCAAGCGGAAAAGCCAATTGCTAAACGCCTTTCGGAGTCGATCGACACCGTCATGGACTCCGATATCAGCGTTTTTCTCGCGAACGCTTCCATCGACACCGCCGAGATCATCTCTATCGACTACTCGACGCTGACGATGTTACTTCCTCTGTTGCACTGGAGCTGCAGTCTATCTACCAGCATAATAGATCGTCATATTTATAAAAAAATGTGTCTCACCCAAAAGAGGCTACGTAGTACTGCCGCCACGCTTCAACGACTTCGCCAGATGGCGTTGTTGACCCGTTGCCTGGATTCCGGACCTCCTGCCCACCGCGGTTCCGTGCTGTTCTCGTTGTTAAGCGCCCTCGTCATCTGTTACCGACGCGCCTCCGCCTCGAGCTCCACTTCAGCCGCGGCCTTGACCTCGTCGTCCTCGACGGTCGTCGTAGCTTTGAACGCCGAGCGACCTCGTAGCACCGTACAGACACCTCCCCGTCTACCCTTCTTCGACCCCGTCCACATCTATCACAACACCGGCACCGTACTCCTAACCCTACCCTGTACTCTACTCCCGCACCCTACTACCAAACCCTTCCTCCTTACCCTATTCCTAATCCCTACTCCTAAACCCTACCCCTGTACCCTGCTCCCGAACTCTACTCCTGAACCCAATACCGACAGCCTACTACCAAACCCTACCCTTGCACCTTACTCCCAATCCCTCCTCACCATACCCCCAAACCCTACTCCCAAACTCTACCCCCAAACCCTACTCCCAAACCCTACTCCCAAACCCTACTCCCAATCCACACAGAACCGGGATGATGGCCTATCAGCCCTCAGTCTTTTCCGAATGCCTGTCACCTCTTCGAAAACCTACACCCTCGAAACCAGCATGCCCATTGGCGAACCCCTGGCCCGCCAGTCTGGCTCATTGGACCAAGGTCTGGGTCCGACCTTGCGAGCCTGCAAAGGTCAAAAGGTCGACGCCTTAACTTTCAAGGCGCTGGGAGCGCGTTCTTTGAATCCGGGTAAAGGAGAGGGGGACTCCAATTGGTTCGTGAAGCAGTGCACTCGCTGCGGGGCCATGTCTAAGATGTATTCGAGGTCGTTGCCCCCGGAGACGCCTTCCAGCGCCGCCGAAGAGACGACGACCGTTGACCCCGTCACTCAGACCGTCTGGCAGATGTCTTGGAACCGCCGGTGCCCTTGTCGTGGCTTGTGGTACCACAATCGCACCTATAGGTGCGGGTTTATAGAGCCCGGGCATGGTCCCCGTTACAGTATCGGTATCGTAAACACTCATGTCGGTTTTAATATTATTATTATTATTATTATTATTATTATTATTATTATTCTTATTATTATTATTATTATTATTATTATTATTATTATTATTATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCAACAACAACATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCAACAACAACATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCAACAACAACAACATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCAACAACAACATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCAACGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCTATACGCTTAAACGCGGCGTAACTGGGCCGCGGAATATTTTATCTACGATTCCGAGAATCGATTCCCGTAAAACATCAACGGACAAGGCGACGCATCCGATGTATCGCAACGTTACCACGGACGGCATGGAAAATGTACCGCACTTCAACGACTACACCGAGTTGAAAGTGAAATTGGAGCCACTGAACATGCAGCAACAGCGCAAATCCAATAGAAAGTGCCAAGTCTGCGGAGAAAGGGCCAGCGGAAACTTTTTCGGAGCCCTGGTCTGTTTACCTTGCAAGACTTTCTTCATTCGTTGTTCCGGCGAAGAGGTAAACGGTTTCCGGTGTCGAGTAGATGGAGGATGCGTAATACTCGGAGCCAAACGGTCTAAATGCAAGAGTTGCCGTTACACCAAGTGTGTGTCGGTCGGAATGGCGCGAAAAGAACGTCCGGAGCAAATCGTTATAGAAGAAGGTCAACAGCAATGCGAGGTTTGCAGAGACGTTGCCAATGGAGTTCACTTCGGAATAGTCAGTTGTGAAGGATGCAAGAAGTTCTTCCGTCGCGGATTGACTGAGAGTGAAAGCTATTCGTGTAAATTGCAGATGCGTTGCGTAATTAATCCGAAAACCCGAAACGACTGCCGATACTGCCGGTTCAACAAGTGTCTGACATCGGGAATGTCTAGGAACGCTATAAAGATGGGTCGACCCAGAAAGCAGTTCTACTGCGATGCATTCGACGGCCGTTGCTCTGATTTCGACGACTCCGGGAAGGCTTTCGACTGCGTACCCGGCTTCTGGCCACAAACACCGGCACTGACCTCGGCGACGGGTCTAACGGACGCGGGAATCTACGCGCAGGAACGCCGCGAGTTCAAAGGATTGGCGTCGACAGCCGGCGGACCCCTCTACACGAATTTACGAGTCGCCGAGAACGCCGCTAGCCACGCCCCTCGACACACCTCCCTGCCCGCCTACTACCGCGCTCCCTACTCGTCGTCTTCTCAAGGTAGCGACTCGTTAACGATGAGCGAGCTGTCGGATTTAGACGAACCGTTTTTATATTCGCCATCTCCGACGCACGCCACTACGCGATCCGACGCACGCCACACCTCGGCGGATCTCAATTATCGTTTTCAACTTCAGCAAATCCACCAAAAACCTTATCGCAATATACAACAACGACAACAACATACACAATATGATCAACAACAACAACAACAACAGCAACAACAACAAAAACAACGACAACGATATGAGCAAAGGCAACAACAACAGCAGCAGCAACAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACATCAACAACAACAACAACAACAACCACACCAAAAACAACAACTACAACAACTACGGCAACCACCACAAGAACAACAAGAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACTACAACAGCAACGGCAACAACATCATCAACAACAACAGCAACAACAACAGCAACAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACGCCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACGACAACAACAACAACAACAAAAATATAAGCAACAACAGCTACAATTACAACAACAACAACAACAACAAGAACAACAACATCAACAACAACAACAACAACAGCAACAACAACAGCAACAACAGCAACAACAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAACAACAACAACAACAACAGCAGCAGCAGCAACAACAACAACAACAACAGTTCGGGTCATTGCATGGGGTCCTGAATTTGAAAGGATTACAATCCGCACTTAATATCAAACAAGAACCGACCAGCCCAACATTCAACCACACCACTGCCTCCGAATTATTGATACAAATTCCAGTAGCAATATCACCGGTTGAGAAAATGGAAGGGCTACCAGAAACTGTAACAGAGATGATGACTGAACAACCCGTCGACATGACCTCCAAACGCTGTAGGAGTCAATCGACTGATTCTGCAATCTCGATGACATCTATGACCGCTTCTCAGCCCTCTAGTCCCAGGCCCCTGAATATTGACTCCGCATTTCCAGCAGGCTACTGGCTACACATTAACCACAAAGCAGATATCTCGACGGATGATTCCTCTGAACTAGATGATCAGCAAAGGATGTATGTAGAGAGATTGGTTGACGAATACTCGGCATTCTGTCACGATATCGTCGACGATAAGCGTGAGAGAACTATGTTATGCGATATGCAGCGCGTTGTTGATTTCATCAGAAGAATTCCTGGATTCGAGGAAATCCCAACCCAAGACCAGTTCGTGATATTGAAACTGGGTTGGATCCAAGTGCTAGAGTTGGTTGCCTGTATACATTTGTTCGACGTCGAAAAAAACTGTTTCATCAAGGATATCGTACATCTCTCTTCAATTCAAGATCAAGCTTCGGCAAGGCGATATAAAAAGGAGCTAGAGAATTACGCCCGCGATATTAACAAATTGCAATTGAGTACACCGGAGACATGTCTACTGATCTCTCTACTCGTCATGGCCTGCGATTGGCCAAATCTTAGCGACTCAGAATTACTAGCGAATAATAGAAATTACTATGTTGAAATACTGAAAAGTTACATAACAGATAAACCCGAACGACTACGGGATATTTTCTCATACATTCCACAATTACGGCAACTTGCATTGTGGCATTACCGAATGACGTTGACGACAAATTAA

Transcript

OFRAG00000011843.1

Protein

OFRAG00000011843.1

MSRSGDRNVNLVKKVVKIALSSFVSAIAMVTIAGDTPYYGLACTINKLPHDIVRNNVHKDESPICAVSNQNIIAITSHRSNFTISKIQFNKTDNRDNFENNYMLVVCDIDKPSKLFCVASLRHPLTLLKWSYDSQVLLTAGSDGHIVAWQRKDELINDWKIAHNNLLQGEKIIAMHFLSNMVQYKYAEDNKRDQNYTTKFRRCKYRPTLTSFGGVPAPGYMCITSSGLFSLVVMDDSPKKNHYTNTMCLGQSRQSIRFADFTADANCRNIHIVAGLTNKFELNMYTVNLTCVPTSESHLHCNIVIETGVGLRPFNDDSSQHEKQITGAKYVQEDDASDLLLTYSSHTGSQVELWRIKKVIVPLHPLLASKATGDFFVSQWERCRGSVKHTKQPIALAMPRLPYTAPSSASITNGGDDEINDRLLRYIAISYSDGTIKLLSYGEELKSLANSMFDEGPLDVSNPTSVNSDQPRHLVSIQQSLSGACLLGIDQSASLSCMKSMNTRDSLCQISIDTTVSLLEYDLVSGFESWDVISIIKPESAKEILQNLSANYDYTISQNQMLHLSMHYMSIYSQLDDMCDNYAQIENRVSVFSTTTDIMVFSILNSAHQLLRTKSIQAEKPIAKRLSESIDTVMDSDISVFLANASIDTAEIISIDYSTLTMLLPLLHWSCSLSTSIIDRHIYKKMCLTQKRLRSTAATLQRLRQMALLTRCLDSGPPAHRGSVLFSLLSALVICYRRASASSSTSAAALTSSSSTVVVALNAERPRSTVQTPPRLPFFDPVHIYHNTGTVLLTLPCTLLPHPTTKPFLLTLFLIPTPKPYPCTLLPNSTPEPNTDSLLPNPTLAPYSQSLLTIPPNPTPKLYPQTLLPNPTPKPYSQSTQNRDDGLSALSLFRMPVTSSKTYTLETSMPIGEPLARQSGSLDQGLGPTLRACKGQKVDALTFKALGARSLNPGKGEGDSNWFVKQCTRCGAMSKMYSRSLPPETPSSAAEETTTVDPVTQTVWQMSWNRRCPCRGLWYHNRTYRCGFIEPGHGPRYSIGIVNTHVGFNIIIIIIIIIIIIILIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIINNNIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIINNNIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIINNNNIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIINNNIIIIIIIIIIIIIIIIINVVVVVVVVVVYTLKRGVTGPRNILSTIPRIDSRKTSTDKATHPMYRNVTTDGMENVPHFNDYTELKVKLEPLNMQQQRKSNRKCQVCGERASGNFFGALVCLPCKTFFIRCSGEEVNGFRCRVDGGCVILGAKRSKCKSCRYTKCVSVGMARKERPEQIVIEEGQQQCEVCRDVANGVHFGIVSCEGCKKFFRRGLTESESYSCKLQMRCVINPKTRNDCRYCRFNKCLTSGMSRNAIKMGRPRKQFYCDAFDGRCSDFDDSGKAFDCVPGFWPQTPALTSATGLTDAGIYAQERREFKGLASTAGGPLYTNLRVAENAASHAPRHTSLPAYYRAPYSSSSQGSDSLTMSELSDLDEPFLYSPSPTHATTRSDARHTSADLNYRFQLQQIHQKPYRNIQQRQQHTQYDQQQQQQQQQQQKQRQRYEQRQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQQPHQKQQLQQLRQPPQEQQEQQQQQQQQQQQQQQQQLQQQRQQHHQQQQQQQQQQQQQQQQQQQQQQQQQRQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQRQQQQQQKYKQQQLQLQQQQQQQEQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQFGSLHGVLNLKGLQSALNIKQEPTSPTFNHTTASELLIQIPVAISPVEKMEGLPETVTEMMTEQPVDMTSKRCRSQSTDSAISMTSMTASQPSSPRPLNIDSAFPAGYWLHINHKADISTDDSSELDDQQRMYVERLVDEYSAFCHDIVDDKRERTMLCDMQRVVDFIRRIPGFEEIPTQDQFVILKLGWIQVLELVACIHLFDVEKNCFIKDIVHLSSIQDQASARRYKKELENYARDINKLQLSTPETCLLISLLVMACDWPNLSDSELLANNRNYYVEILKSYITDKPERLRDIFSYIPQLRQLALWHYRMTLTTN

Gene family

Gene family	Subfamily
Transcription Factors Family	GCNF-like

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00105	zf-C4	Zinc finger, C4 type (two domains)	Domain	Interproscan
PF20719	Med16_C	Mediator complex subunit 16, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000536	Domain	Nuclear hormone receptor, ligand-binding domain	Interproscan
IPR001628	Domain	Zinc finger, nuclear hormone receptor-type	Interproscan
IPR013088	Homologous_superfamily	Zinc finger, NHR/GATA-type	Interproscan
IPR035500	Homologous_superfamily	Nuclear hormone receptor-like domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR048338	Family	Mediator complex, subunit Med16	Interproscan
IPR048339	Domain	Mediator complex subunit 16, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13224	THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016592	Cellular Component	mediator complex	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-