Gene detail

Detailed information of OFRAG00000009741.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000009741.1	CUBILIN-LIKE PROTEIN	tig00001703	140802	164803	-

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000009741.1

ATGTTGGTGACATTGCTGACTTTGACGTTTCTCCTTATGATGCACGGAGAAGGGTTTACATGGGTCACTTCACCGGATGTCACCGCACCAGAGGTCACTTCAACAGAGGTCACCGATGCCCATTTCACTGCGTCCAAAGCTACGTGCCTGGACAGATGTACGGAGAGTTATTTCCCAGGCAGATTATGCTATTGCAACGTGGCATGTGACCAGTATGCTAACTGTTGCTATGACTACTACATGGAGTGTAACCCTAAATACCAGTGGAGCGAGGAGTGGATGCATTTCGAAGGTCATAGCTATAAGTACTTCTCGGATGCGAGGACAACGGCCGATAAGGCTGCAGTGACCTGTTTCTCCGACCACAATTCATTGCTGGTCAGCATCAATACAGTAGAAGAGCACAACTTCCTTGCTACCAAAGTCCTTCGCAAGAGAACTCTTAGTGCATTTATCGGAGCTACGGATATATTGCAGGGTAATTGGAAATGGGCAGATGGAACACAAATGCCATTGTCCGGAACTGACCAGTGGTCTCAGTGGATTTCAGGAGAACCTGATAACAGTAATAACGTTGAACACTGCGCCGTAATCACAAACTACCGTTACTGGGCCATACGTAAACTTGTGTTAGATTCGTACCGTTGGCTGGACACTAATTGCTTTTTCAATGACAATAACGACATCCAGGGCTTCATCTGCGAGAAGACAAAGGCTTGTGAATCTTCACCATGTCTCAACAATGGTACTTGCAACTACGTAGGAGGTGATGACGAGTTTGCTTGCATCTGTAGGAAGGATTATGTAGGTCAAAGATGCGAATACCAAGTAAGACGTAACCAAACATGGCGTTATTGCGGGCAGACCTACCTTAACAAAACTAGCGGAGTGATCACGTCTCCCCTTTACCCCGACCCATATCCCAACGATGTGAGATGTGAATGGCTGATCATATCGCTTATTAATCGCACTGTATTATTGAGAATGGAGGAAATGCATATCGAATTCGTTAAATCTTGCATTTTTGACCGTTTAACAATATACGACGGAAACACCAAAGATCATGACATTTTATTCGGTCCTAAATGCGGTTCCCTAACTCGCAACCAAACAAAGGATGTTATTCTGTCTTCCGGAAATCAAATGCTAGTTGTTTTCAAAACTGATAGTTCCATTGCTTCAAAGGGATTCAAGTTAACATACAAGGAAGAAAGTTGCGGTTTAGGAACAGGAGAATCGGGATGTGGAAGTCGAAGGGATTTCGTCGCCAGATGTGGTGCTATAGATATTATAAGTCATTCAGGCGATCCTCTTAATTGCCAATGGAGCATTCGAGTTCAACCTTTAACCTTCGTTAACCTCACTTTCGAATTGTTCGACATACCTGAAACAGATTCTGAAGTTCTCGAAATATTCGGAACAGATGCAGTCGAGGTATTTTCAGAGATCAAAGGTCAAATATCATCATCTAACGACCAGCCTCGTTTTGAAACACCCGATTTCGTAACTTACGTGTGGAGATTGAGGGTTCAGTATGGTCACAAGCTGGTTTTTAATTGGACGGTGAATACAATTGATCAAAGCTCTCTTAAGGTTTTCTCTGGTTACTCTGAGAGATCCGAAATGATATTGGACCGTAAATTCTTTAATGAAACTACAACATCTGGCTTGAAAGTAGACACATTTCGAGTTATTGTTGTTTTCAGAAAACCTCGTTACTCTAACTCCATCTTCTTCGCGAACTTCAAATCATTAGATTGGACTCCCAAGTTGTCAGGTTGCTATAGGCCTGGCTATTTCGACCGTACAGACTCCCCGGTAACCGAGAACTCTTTGGTGACGCAACTGAGGCCCGTCGTACTAGCTGTTGCGCAATCCATGCCCTCTAACATTCATTACGACGCAGGTATGTACTGTAAATGGACAATAAGAGGTGATACCAACAGCTCTTTACGGGTTCTGTTTAAAAACATCAACATCCCGCCAATGTCAGAACGTTGTGAATACGACGGAGTGCTTTTCTACGATGGTTATGACATTCTGACAGCTCAACGTCACGGACCTTACTGCGGGTCAAGTCTAAATGACATCACACTGGAGTTCAACTCCTCCGTGATCAGTGTGGTGTTTTTCTCGGATTCCAGGGGTGGAAAAAGGGTCGGAGGTCAAGTCCGCATGATTATCTCCACTCAAGAAAATATCAATAACTGCAAAACATATTACATGGAATCAACTTATTCCACGGAAATAAGAGAGACTTGTGGAATAATCCTATCACCTAGTTTGCCATCATTAGTGGAGCCTGGACAGTGGTCGTGGACATTACAGGTACCGACTAAAGAACAATATATTGATTTAATTATCGAGTACGTACTTGGACCAGGAGAGACGTACAGCCAAGAAGAACACTTGAAAGACCACGCCCACTACACGGACCACACCCACTACGTTGACCACGCCCACCACACGGACCACACCCACTACGTAGACCACGCCCACTACACGGACCACACCCAATATGTAGACCACGCCCACTACACGGACCACACCCACTACGTAGACCACGCCCACTACACGGACCACACCCACTACGTAGACCACGCCCACTACACGGACCACACCCACTACATAGACCACGCCCACTACACGGACCACACCCACTACGTAGACCACGCCCACTACACGGACCACACCCACTACATAGACCACGCCCACTACACGGACCACGACCACCGCATAGACCACTCATACTACCTATATGACACTAACGTGTCGTCTAAACTTCATATACTCCGCACTTACATGCAAACAGTAATTGAGATCTCCCAAGTTGCAATAGAAAGACGACTTATTGAGTCAGAACTACTTTCTTTGTCTGGGGATACAACTATACTTCGGCCTAGATACACTCTGAAGGCACCACCGGGTCAGCGTATAGTGATCAAACTAAATACCGCTACAATGTCGATTCCTCGTCAATGGCATTTCAAGATTTCCTTCACCACTAAAGTGATGCCCTCCCCAAAATATACTTCGATCATTTCAGACCGGTGTCCGACTGACTACGTTTACTACGCCGGCTCCTGTTACCGTTACTACGCCTGGGTGTTACGTCATTACCGTCCTAACCAGTACCGGTTCCAAGAAACATGGTACAAGGCGAGTACGAGATGTGCCAGCGAAAACTCTACTTTGGTCTCGATATTAAACGAAGACGAGGCTTACTTTATCAAGTACACCCTATCAAACTACTGGTTTTGGAATTCTGCTGCTTCATTTCAAAAGAACCACCGTATGATTTTCATTGGTCTTTCCAACGTGAATGGTATATACACTTGGGAAGATAAGTCTCAACTGGGCTACACCGATTGGTATAGCCCAGTGTTACCATGGCAACAGATTGTACTGCAAGAGGAACTCGGCAACATCGGTGATTTGATATCGATGAGTGTGCAACAGCCACTGCAAGGTGGCGCTAGTCTTTGTACGGTTGCCATGGTTACTTCACCTCACTTATCACTCTTCTGGGCCAAAGTTCCCTGCGAACTACCCATATTCCGCGTCGGCTTGATTTGTAAACAGCAGGCTAAAGTCTGCCCGGAGGGATGGATAGACTCGGGAGAAAACGAGTGTTTCATGCTGCACACCTCGTACTCGAATTACAGCAACTCTAGTTCCGAGTTTGGTCGCCAGGGAGGCTTCTCGAGAGCGCAAGGGATCGATGCTTGTAGGGAAATCGCGAATTCCACAAAAGCTAATTCTAGTGATACCGTACGGGTTAGTATAGGAAACCAAAATACATTGAATGGCGTTTGGTCAATTTACTTGGATCTTTGGAGATTCATACCGGAAACACGTGGGGATATCATCGTCGAGTCGAACGATCCTAATAAATGTCACGTGATAAGGGTTGATTATGAAGAATACTGCTTTTCTTCGGAATTTACTTGCGACAATGGCAAATGCATAAACAAAGAATACCAGTGCGACAATGTAGATGATTGTTCTGATGGGTCAGATGAAGATAACTGTGATAAGTGTGAAGTTGGAGATTCTCTACAGTTTCAATGCAAGAGTGGGGAGTGTATTCCCATGACGAGATTTTGTGATTTCAGGACAGACTGTAAAGATGGGAGTGACGAAAACAATTGTAGTTAG

Transcript

OFRAG00000009741.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF00431	CUB	CUB domain	Domain	Interproscan
PF01033	Somatomedin_B	Somatomedin B domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR000859	Domain	CUB domain	Interproscan
IPR001212	Domain	Somatomedin B domain	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR035914	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR036024	Homologous_superfamily	Somatomedin B-like domain superfamily	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR052129	Family	Spermadhesin-Link domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46908	CUBILIN-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-