Gene detail

Detailed information of OFRAG00000009354.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000009354.1	RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED	tig00001607	334167	340289	+

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000009354.1

ATGGCCCAACCCGCTGTTTTAGATGAAACTAGATTTGAAGAGCTTTGCAATGATTTAAATATGGATATGGATGCAAGGATTGAATCGCTGAAATCTTATAAAAGGATTATGGTAAATTATACTTTAGAGGGCGATTCTTTGCAGTGGTTGGTGTGCGCCCTCTATGTCAGTGGCAAGCGCAGCCTTCTGCAGACTGTTGACGGTCAAATTGCCGCCGGCAACCACATTTCACTTACTCGACTGCTTCGTTCGGCAAAAATGAGTTTGCTCGAGTTCTTTAAGAAGATTCGGTCGTGGTACGACATGGCCAACCTTCCCGAGGATTTTCGCCGGAGAACGGCCAAACTCGAACGCAACTTCGCGGTCAGTTCCGTACTTTACAACAAATTCCGGCCGATATTCGCGGACGTGTTTGCGGAGCTACCCGGCGGAGTGAGACCGTCTCGTAACAAACGTAAACAAAGAAGAAATCCTTGCGACAGTGACGATATTCAAAAGTTTTGTTGGACAATGTTTGTGCTCGTGAAAGGTAAATTTCCCGCGCTTTCCGATGACCTAGTTAATTCCTACCACCTGTTGCTCTGCTGCGTGGACTGGGTCTACACCAACATTAGAATCTCGCAACGCCTGGATTTACTGAATAGCAAATCTGCTGTTTTACGCTCCGAAAAGGGTGAAGAGCCAAATGACATTCTCGACTATCTAATACGTGCTCACGAAGGCATTTCAATAGAGGTCAAAGGTATTCGCGAACATTGGTGGCGACCTTTCATCGTAAAAATGTTTGATAAGATTACGACTCCATATCTGAAAGGAAGAATTGATGACATATCCGGAGTTTTCGACAATCACAATTACGACGCAAATTTTAAAGCAATTTCACATTCATACGAAGAGTTTGTTTTAACAAAAGGAGATTTTGATGAGAGACTCTTCCTCCGAGACAATGCAGCTGAAGAAATTGGTCTGAACGAAGGAATTTCACTTGGAGATGAATACTGCAACAGTCTTGCCCCCAGTACTCCGTTGACTTGCCGTCGTTATTACACGGGTACCAATAACCCTCCGGCCCACGGTACCAAAACTCCCATTTCCACGGCAACTCAGTCCGTACAACTTAGATATTTTGCTACTGCCACTGCTACATCTACTGTTGCAGCTACAGCTACTGCTACAGCTACTGCTACTGCTACAGTTACTGCTACAGCTACTGCTATGACTAATGATACAGCTACAGCTATTGCTACTGCTATAGTTACAGCTACTGCTACAGCTACTGCTACAGCTACTGCTACAGCTACTGCTACAGCTACTGCTACAGCTACTGCTACTGCTACAGCTACTGCTACAGCTAATGCTATAGCTACAACTACAGCTATTGCTACAGCTACTGCTACAGCTACAACTACTGCTACAGCTACAGCTACAACTACTGCTACAGCTACTGATACAGCTATTGCTACAGCTACTGCTACAGCTACAGCTACTGCTACTGCTACAGCTACTGCTACAGCTATTGCTACAGCTACTGCTACAGCTATTGCTACAGCTACTGCTACAGCTACAACTACTGCTACAGCTACAGCTACAACTACTGCTACAGCTACTGATACAGCTACTGCTACAGCTACTGATACAGCTACTGCTACAGCTACTGCTACAGATACTGCTACTGCTACAGCTACTGCTACTGCTACAGCTACTGCTACAGCTACAGCTACTGCTACAGCTACTGCTACAGCTATTGCTACAGCTACTGCTGCAGCTACAGCTACAGCTACAACTACTGCTACAGCTACTGATACAGCTACTGCTACAGCTACTGATACAGCTACTGCTACAGCTACTGCTACAGCTACTGCTACAGCTACTGCTACAGCTACTGCTACAGCTACTGCTACTGCTACAGCTACTGCTACAGCTAATGCTATAGCTACAACTACTGCTACAGCTATTGCTACAGCTACTGCTACAGCTATTGCTACAGCTACTGCTGCAGCTACAGCTACAGCTACAACTACTGCTACAGCTACTGATACAGCTACTGCTACAGTTACAGCTACTGCTACATCTTCAGCTACTGCTACAGCTACAGATACAGCTATGGCTGCAGCTATTATTACTGCTAATGCTACTTCTATCAATAACTATTTCACAAACAATACTATTTTAATTATATTACAAGTATAA

Transcript

OFRAG00000009354.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11934	DUF3452	Domain of unknown function (DUF3452)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024599	Domain	Retinoblastoma-associated protein, N-terminal	Interproscan
IPR028309	Family	Retinoblastoma protein family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13742	RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000785	Cellular Component	chromatin	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan
GO:0051726	Biological Process	regulation of cell cycle	Interproscan
GO:2000134	Biological Process	negative regulation of G1/S transition of mitotic cell cycle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-