Gene detail

Detailed information of OFRAG00000009252.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000009252.1	NADH DEHYDROGENASE UBIQUINONE FLAVOPROTEIN 2, MITOCHONDRIAL	tig00001579	355125	372901	-

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000009252.1

ATGAAAAAGGAAATACTAGACTATGTAGAAAGAATGGATATTACGCTTAAAAATCATCACACCTTCATCGACGGTCTGAACGAATTACAAATCTTCCAGAAGCGCAATCGCTGGATGAAGCAAATCCTAGTCCGGGGCCTACCGAGCGGCTACACCGAACACCACCTGCGCCAGTTGTACTCGACGTACGGGCAGGTCGTGCGGGCGGAGACGCGCACCATCGAACACACCTCCCAGACGTACGGGCTCGTCGACTTCGCCGGCGGCGAGAACTGCAACCTCGCCGCGAACGGCACGGACCGTCGTCCGTCGGCGAACGGTCGCCTGCAGGTGGCGCGACAGTTCACGAGGTCGCAGACGCGCCGCCGCGAGCACACCACGGTGTGCGTGGAGTTTCTGCCGCGCGAGTGCGGCGTCGACCGGATTCGCCGACGCTTCGAGCCCTACGGCAGCATCGTCGGCCTGCGTTGGCTCGACGGCATGTACGGCGAGGAGCAGCCGGATCCCCTGTGGGCCGACTACGACACGGGAGTTCTGTTGACGTTCGAGTTTCCGGGCCAGGCGTTCGCGGTCATCCGCGACACCAACGGCAGACCATTCGATATTGAAGCCGGAGGCGCTAATCTCCTCGTAGAGCTCACCGATAAGCAGTTACTATTGGACAGCGTCTGGCATGCTATGGAAATGAACCGGGTACACACCGTACCTTTTCAGGCCCCGCAATTCGCTCACCCCAGAGAAGTTGCAATGAATCAGAGTGGAGTTATACCTCATTACCAGGCTTTGGCATTATCCAAGGCAGCAGAACAAAATGAAACTCAAAGAATAGTCAACATGGCATATGGAGATATTGAAACCAATGTGCTGAACTACCAACCGCAGTACAACCAACGAGTCTACCCGACGTATAGCAATACTCAAGGGCAGATGCAAGATCAACAACGAACGCTGTTGCGCGAGCTTGAGAACCAACGACTGGCGAATGCACTGCAGCAGCAACAGCAGCAACAACAGCAGCAACTGCAACAACTGCAACAACAGCAACAACAGCAACAACTGCAACAACAGCAGCAGCAACAGCAACAGCAGCAACAACAGCAGCAACAGCAAAGACGAACGCAGATGAAGGCGCATTCTCTAGCCCAGGGCATCTGCTCGTCGAAGAATCAGGGGGTAAAACGGCGGACGGGAAGAGGGGTCGGCGGGAATCGAGCAGTCTGCTCCGATCGCGAGATCACCAAAGGACTGTTGGAAATGGGTAACGGCCATTATCTTAACGGGCAGTTCGTAAGGCACGAGAGCGGAGGTCACGTCGGAGGTCGCGGTGGCAGCGTAATCGTCGACGCCGGGTTGCCGTCTTCGACGCCGTACAGACTAGCCGAACGCGGCGTTTACGCCGACGACAACAACAACGACGTCGCCGGACCCTCTTCCGGCGGCGGCGGCGGCGGCCGCGGCGGACCAACGGAACTACGCGACGGATGCGAATTGGACACGGCGCCTCGGATAAGCACGACTTTCGAGCGTACCGCCGTCGAAGGTCCGCTGGCGAGTCTGCGGCGTACGGCCAGCGGAACGCTGGTGTACGTGCGCCACCTGACGGATGCCTACGACGAGCAGTATATTTACGCGCTGTTCTCGCAGTTCGGCGACGTGCTGCGCGTCGATCTGGCCCATAGTTCGGCGAGACCCGGCGACGGATTCGCATTCGTCACCATGGTGGAACTGAAGTCGGCGAACAATGCAGTAGACGGCCTGAGCGATCTTAATTTCGGCAGCGTACAAGTCAGGATGGTGATTAACACTTTGGCAAAGTTTGTACGGCCTATTCAATCATCTGCTGTACTCTCTAGTGATAAACTTTTCGTGCATCGAAATACCGAAGAAAATAAGCAATCCGATAAATTTACCTTTACCGATGAAAATATCAAGCGCGCCCAGGCCATTATCGGCAATTATCCCGTCGGCCATTCGAACGCCGCCACCATCCCGCTGCTAGACTTGGCGCAACGCCAGAACTCCGGTTGGCTGCCGATCTCCGCGATGAACTACGTCGCCGATTACCTGAAACTGCCACGCATCCGCATTTACGAAGTAGCCACCTTCTACACCATGTTCAATAGAGACCCAGTGGGTAAATACCGTCTGTTGGTATGTGGAACTACACCATGTATGTTGGGAGGTTGTGGATGTGGCAGCATCTTTGATATTATTAAAGAGAAAACTGGATTGAGTCCCGGTGAGGTGTCCAAGGATAAGCTGTTCAGTCTCGAGGAGGTGGAGTGCCTGGGAGCCTGTGTCAATGCTCCCGTCGTACAGATCAACGACGATTATTATGAAGATCTCACACCAGAAGACATGTCTAACATCATTGACGATCTAAAAGCAGGAAAAGCGACAAAACCCGGACCTAGAAGTAAACGCTATACCGCTGAACCCCTGGATGGCCTCACCACCCTTTTGGAAGAACCCAAACCTGCTGGTTTTGGAGTTCGAAAAGATTTATGA

Transcript

OFRAG00000009252.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF01257	2Fe-2S_thioredx	Thioredoxin-like [2Fe-2S] ferredoxin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR002023	Family	NADH-quinone oxidoreductase subunit E-like	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036249	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR041921	Homologous_superfamily	NADH-quinone oxidoreductase subunit E, N-terminal	Interproscan
IPR042128	Domain	NuoE domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10371	NADH DEHYDROGENASE UBIQUINONE FLAVOPROTEIN 2, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003954	Molecular Function	NADH dehydrogenase activity	Interproscan
GO:0005747	Cellular Component	obsolete mitochondrial respiratory chain complex I	Interproscan
GO:0006120	Biological Process	mitochondrial electron transport, NADH to ubiquinone	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0045272	Cellular Component	obsolete plasma membrane respiratory chain complex I	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-