Gene detail

Detailed information of OFRAG00000009165.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000009165.1	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	tig00001552	246394	298174	-

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000009165.1

ATGAACCATTACGTGAATTCGTATTGCGGTAAAGATGCCGATGATGTAGCGGAGTCTGGTCGAAGCCAAACTTACTATGGCGGCATTGGATCGCACGACGAGCTTAGCAGCGCCATCGACTCAATTATTCCGGAAGATCCGCTACACGTCTCGCAACAATGTCCCCAGCAAAATCAACAGAAATCCGTACCTCGGGCCCGCTGTCAAACCTTCGAACGTAATCAGAATATGCCGCAACAACCCTCGTATGACAGTTGTACTTACAATCAAACAGCTGCTCCCGCTATAGTGACCTCCAACGACGACCTAATGAACGCGCCTTCGTTTAACCTGAATAATAACGCGAAAAGCAGTATCGGCCATAGTCACGCCATGCTGGAGAAACGCTCGAATCGCGATGGCTATCGAATGGCGAGCGATATTCCGTTCAGTCAGCAGCAAGCTCTTCCTGATTACGCTCACCAGGAGACGCCATCGTATATGCCTAGTCCACCGTATCGGGGAGGGTATGCGTCCGATACGGGCATTAATTCGGCTAACGAATGGGGAGATTTGACAGCTTTAGATCCGAGTCAATACAATCACTACGCAGCTAATATGTACCAACATCCGGGAATTCCGAACACCTTTAATCCACCCCGATTCTACCAACAACATACTAGGCCTAACAAATGTACGACAAATGTAGTTAAAGGACGTAGACGGGTGGGAAGGCCGACCAAAAAAAAGCTCTCATCTGTATTGCGGACACCACTGAACGAGTCAGAGCACCTGGGCGCTAATCCGTTAAATTGCGGACCGGATACACCGCAAACTAATAGACCCGTCGGTCGACCTCGAAAACCGGTGATCGGCCAGCTGTTCAAAATAGACATGCTCGATACCGACGCGGAAGTGGTTATGTCAACCAACGGGAAGCTAAAACAACCGGACATCGGTAGTTCGGAAGCAAAGGAGGAAGTGTCGCAGGTATACCTTCCCACGGGCATGCTGACCAACGTTTACATGCCGATCAACGGATGCAAGGATGCCTATCGTCCGGCCGGTCGGAGCTCCATGGTGTACCGCCTCGATAATAAAGTAAAAGATTTCCCGCAACAACCGCCGCACGTCCAGAAACAACGTCAGATTCTCAGACCCGGATGCAAACGTAAGCCGTACGTCTACCAGCCCGTCGGTCGATCCGCCAAAGTGTACCGAGTGCCGACGAAACAACCTCGCGAATACGAGAAATTCAAACCGTTCTACAAGGACGTCCCGTACGGAGGCCAAAAGAAACAGGAGACGACGGCGGCGAAAGTAGCGGACAACGAAAATCCAACACTTGATCCGTTGTTCTTCGGCTACCAGATGTGTCGAGTTAAGACGCAAGGTATTTGTGCGGGCGATGCGCACGTTTTAGCGTCCGGTTCGGATAATACGCTTGAGCTCGGGGCGCCTTCAGACGAGGCGGGCGTTTTTGCACCTCGTACGGATAATCCGCTTAACGTCGGGGCGCCTTCAGATGAGGCGGGCGTTTTGGCGCCCAGTTCGGATACCCCGCTCGACATCGGAGCGCACGCGGACGGGGCGTGGGTCTTCGAAGGCCCGACAGAAACCGCGATCGAAACATGGCATAATGGCAACTCAAATTGCAATTTAAATTCGAACGAGCGCGTTTGCAAACAAAATCTAGATAATCAAAATACTGTTGGGCCAAACGATAATTCTGTTCGTAATACGGCATCTGATGGAGGTAACAGTACCGTACAACCCACCATAACCTCTCATGATAATTCATTTCAATACACGGATAATATATCGCAGCCGGTATCCCAATATGTCAATCAATACAGTTCACAACATGAACATGCTAGCGTTGATTCTGTCGCATTCTCACAATACTCCAACCAAATTCAAAAGCCTAACTACTCGTACTCCAACCAAGCAACTAATTCCGAATATTCAAATCATATTCAAGAAACGAACTATCAATACTTAAATGAAACTAAAGGAACATATTTCCAATACAATAATCAAAACCAAGTACCCAATTCTTTGTATTCAATCCAAGATAACATGATTGACTCGCATTATTCCATTAAATCCACCGAAAGTAATTCCCAATATGTCAAACCAAACCAAGAAAGTAACCCTCAATACATTAAACAAGTCCAAGTTGCCAACGTCCAATATTCCAAAGACTCGCGAACAAGTGGTCCCGAGTCTGTGAGTCTGGTTCCATCCGCGGCTGCCAAGTGCCGTACGTCTCCAGAAGATCCGGGTTCGCGCGTGAATGCGATATCTCCTCTGTGGAGCACAATAGATCGGTCGGCGAGTTCGTCGGGATCCGTTCTTCGCATGCCTTCGATGGAAACCCACCGACGCTCCTGGAGGTTGAGTCAACGGGACCGGGATCGCCAGCCAGTCGTGGCCAGTGTTCCCTCGTACGGAATGCCCGTTGGAATAGATAACGTCGGTAATACTTGTTGGTTCGGCACCCTCGTTCAGTGTCTATTCTCGATACCGTTCCTGCGTGGAATAATAGCAAGAATGCCCATCAGAGAATCATACGTCCACGAGACCAAAGCACGTCGCTTTCAGATCGAGTTCACGCGCCTCTTCGTAACAATGTTAACCAGTAAAGAGACATCGGTCAGTCCTGTAGATGTTGTGGCGACGATGAACCAAGGCTCGGAGGAATACGAACAACAGGATATCTCGGAGATGCTGCACAAAATCCTGGACTACATCGAAGAGAGTTTCACGGAAATCGCACCAGAACTAAATAATCCAATATTGATATTTTTCTACGGGGAGCAAATGTCAGTGATTCACGGAACTAATGGTTACAGGACAAGCGACAACTTAAAATTTGGTCAGTGGACTCTGACTTTAGAGCAATCATCTGGATTATATAATAGTCTTGACCGATTCCAAAATATCATGAATCATTATGGTCCTTCTGTAGAGTACTGGGTGATAAAGTTTCCGTCAATCATCACATTCGAATTGAATCGTTTCGTGCAGAATCCCGTCACGCTCAAGATCTCAAAAGACAACACTTCTTTCTGGTTTCCCGAGAAGATCTACATGGACAGGTACGAGATAGAAAGAAGGGAGGAGAGATATGTGAGCTCGGCTTTAATTCGACGCTATTCTATTGACATTAAAACTTACGCACACGAACTTAAGTCTTTAATACTTATACCGACTCGAGAACATAGATTGTCACGTGATACCAATGACCCTAAAGAGGTAAAGATGTTGGCTGATATGGTCATACAGGTGAAAAGGAGCGGAGTACTCGGAGTAAAAGATCGCGCAGCCGCCCTGCAACAACAAAACTCTAAACCATTTCCGGCGGCCTCAGCATCCCCGTTGCAAAGTCGTTCGTTCGCCACGACATTCGATATCGAGTACCTGGATTCGTTAACGGCGAAAGATCGCGTTTCCGGTGTATTCGACGACGCCGACGAGTTTTCGATTGGCGTTTCGCCGGGCGGACCGTCGAATGTCTCCAGGCCCTCGACCCCGGCGTCGCCAGGTGTCGAGTCTGCGAACGTCGACTCGGCCGTTGGCGGAGAAGACGACGACGACGGTAAAGACGAAGACGCGGAGTTCTCTCTCGACCGTTTGGGATTGTATTGTTTAGCGGAACGAGTGCTGAACGCCGCCAGTTCCGCGAATCCTCGGAAACACAGTAACATCGGCAGGTACAACGACCAACTGTTTACGCAACTGGAGAGACGTATAAAGAAACTAAATGAAGCAACAGAAAAGGCTAGATCCATCATCTACGAAGCTCTGGATGATCAGCGAAGGAGATACAAGAAGTTTCCGTTTCTTCTCTACGGGGTCATGGTCCATAGCGGTACTGTCTCTTGTGGTCATTACACATCTTTCACCCGCGATACTAATAAAGCCAATAGCTGGTTCCGGTGCGACGACCAAAAAGTCACCATGGCAACATTCCGAGAAGTTACAGTCGAGGCGTTCGGTAAAGATGAAACGTCCGCTACGGCGTACAGTCTGATGTACGTAAATGACAATGAGGAACACAGGCGTAATAGGGTGTATGTAAACTGTACATTTGCTATTGATTTGAACGAACCCTTCGAGATCATCGGAGAATGTGATTTTCCCTTTAATGACACACTAAGGAAATCATATAAAATGAGCAATTCATGCGTTGTGGTCGATAAAAAAAATATCTGCATCACAAAACAGAAAAAAGTCGGCGAGTGTTCTCTTTACTGTTCCACTTTTACGAAGAAAGAAAATATAAAATTCTTGAACGGCACACGATTTTTAACATTGAAGTCAGTTGACGAATGTATACATGAGTGTCGATCCAGGGTGCACTGCTTCGGACTAGATTGGGAGGTATACAAAGAATTTTGCTGGTTAAAACTGGGAACTACCTCGATGAGAAAAATAGAAACAGTCGTTTACCCTGGTATTATGAATTACCGCCGGAAAGTATTAACTTGCCACACGAATATCATAATAACATTGCTGCCTTACGTCGTTTTATTCTGCGTGATGGCGAGCATCATCATCTTCTGTACACAATACCAGAAAGTCTTGTTGAACGAGGAGCTGAATAGAATTGATATTATCCGGAAAAAAGAGTCCGCGCGAAGTTGTCGACGTGAGAGCAGAAAAAACAAAGCCTTACAAAATCTCTTTATACGAAATTCCGACAACTCAACGTGTACCGGGTCAATCAAATACGAGAACGAGAAGGACATGGATTTGCTTACGTCATTTACGTTATTCTTAACGATTATATTCCTTATAAGTGGAGATGAAACGGAAAATATTGAAATACTAGAACAAATAATTGTAAGACCTGGAGAAGATGCTGTTATCCCATGTATTCATGATGAAATAATCGACGGAATGACAAGCTGGAACAAAGATCAATTCCTCATAGCCAATAAGAATTTCGTGGATCCAAAATATGTCAGAGTAGAGAAGAAAATAGTTAAAGATGGAATATTTAACTTGTTGATAACGGACGTGAGGGAAGAAGACGCCGGAGAATACATGTGTACGGTGATAGCGGGATGCGATGGACGCAGTTGTTCTATACACCGTACGACCAAGACGAAACTCGTAGTGTTCGTTCCTCCAGAAGTTAATATTGTTGCAAAGTATGAGTTAATTAATGAAGGCGAATCTCTGAACTTAACATGTGAAGTAATTAGAGGAAGTCCTCCGCCTAGAATTATCTGGACTAGGAAGAGCGGCAAGACTTTCAGTCTAATAGGTGCACATGTTCTGAATATTCGCGAAGCATCTTTCGACTCCATAGACACTTACACGTGTACGGCTGACAACGGAGCCATTGACTCCGCAAGTCAGAGAGTCAACGTGAACTTCGAAACCTTCTTGAATTACTCTTCTGAATCCGACGTTTCCGTGTCGCTCGGATCTTCAACTACACTCTTATGTGCCTTCGTCTCTTCGCAAAATGAACTCGAGGTCACTTGGGATCACAATAGCGTATCGGATACTCAACGTGTTTCTAATTACGAAGGAATTACAAAAGTTTCTCAGTACGTTATCAAGGATATAACTGAAAATGAATTAGGAGTTTACGAATGCAAAACAATAGATAACATTGACTACGTAACTCATCAACAATTCACGTTAATTGCCTCCCCAATTTTCAAACAATTCATAAGTAAACAAAAATCACGATATTCGCATAAGTATGTTTTGAAATTTGAAGCCATTTCTGGTGAACAAATGGTCGACTACAGAATATTTTACAGAAAGCAAGGTTCGGGCACCTGGAAGATAAAGAAATTCGTTACTCGTACGTCGATATTCTCTAAGAAGCTGTATAAAGAATTCGTGGAACTCAGCAGTTTGCGATCGAAAACCTCCTACGAAGTTATCGTAGAGCCACGTAATTCATTCGGCAAGGGAAGGAACAGTAGCATTTTTTCGTTTCAGACCTCAATTAAAGTATACTCAGTTATACATGCATCTGCCGTGCAGGAAGTTGGGGTATTCTCCACAATTCTAATGTCTGCAATATTCTATGTATTGGCAGTATGA

Transcript

OFRAG00000009165.1

Protein

OFRAG00000009165.1

MNHYVNSYCGKDADDVAESGRSQTYYGGIGSHDELSSAIDSIIPEDPLHVSQQCPQQNQQKSVPRARCQTFERNQNMPQQPSYDSCTYNQTAAPAIVTSNDDLMNAPSFNLNNNAKSSIGHSHAMLEKRSNRDGYRMASDIPFSQQQALPDYAHQETPSYMPSPPYRGGYASDTGINSANEWGDLTALDPSQYNHYAANMYQHPGIPNTFNPPRFYQQHTRPNKCTTNVVKGRRRVGRPTKKKLSSVLRTPLNESEHLGANPLNCGPDTPQTNRPVGRPRKPVIGQLFKIDMLDTDAEVVMSTNGKLKQPDIGSSEAKEEVSQVYLPTGMLTNVYMPINGCKDAYRPAGRSSMVYRLDNKVKDFPQQPPHVQKQRQILRPGCKRKPYVYQPVGRSAKVYRVPTKQPREYEKFKPFYKDVPYGGQKKQETTAAKVADNENPTLDPLFFGYQMCRVKTQGICAGDAHVLASGSDNTLELGAPSDEAGVFAPRTDNPLNVGAPSDEAGVLAPSSDTPLDIGAHADGAWVFEGPTETAIETWHNGNSNCNLNSNERVCKQNLDNQNTVGPNDNSVRNTASDGGNSTVQPTITSHDNSFQYTDNISQPVSQYVNQYSSQHEHASVDSVAFSQYSNQIQKPNYSYSNQATNSEYSNHIQETNYQYLNETKGTYFQYNNQNQVPNSLYSIQDNMIDSHYSIKSTESNSQYVKPNQESNPQYIKQVQVANVQYSKDSRTSGPESVSLVPSAAAKCRTSPEDPGSRVNAISPLWSTIDRSASSSGSVLRMPSMETHRRSWRLSQRDRDRQPVVASVPSYGMPVGIDNVGNTCWFGTLVQCLFSIPFLRGIIARMPIRESYVHETKARRFQIEFTRLFVTMLTSKETSVSPVDVVATMNQGSEEYEQQDISEMLHKILDYIEESFTEIAPELNNPILIFFYGEQMSVIHGTNGYRTSDNLKFGQWTLTLEQSSGLYNSLDRFQNIMNHYGPSVEYWVIKFPSIITFELNRFVQNPVTLKISKDNTSFWFPEKIYMDRYEIERREERYVSSALIRRYSIDIKTYAHELKSLILIPTREHRLSRDTNDPKEVKMLADMVIQVKRSGVLGVKDRAAALQQQNSKPFPAASASPLQSRSFATTFDIEYLDSLTAKDRVSGVFDDADEFSIGVSPGGPSNVSRPSTPASPGVESANVDSAVGGEDDDDGKDEDAEFSLDRLGLYCLAERVLNAASSANPRKHSNIGRYNDQLFTQLERRIKKLNEATEKARSIIYEALDDQRRRYKKFPFLLYGVMVHSGTVSCGHYTSFTRDTNKANSWFRCDDQKVTMATFREVTVEAFGKDETSATAYSLMYVNDNEEHRRNRVYVNCTFAIDLNEPFEIIGECDFPFNDTLRKSYKMSNSCVVVDKKNICITKQKKVGECSLYCSTFTKKENIKFLNGTRFLTLKSVDECIHECRSRVHCFGLDWEVYKEFCWLKLGTTSMRKIETVVYPGIMNYRRKVLTCHTNIIITLLPYVVLFCVMASIIIFCTQYQKVLLNEELNRIDIIRKKESARSCRRESRKNKALQNLFIRNSDNSTCTGSIKYENEKDMDLLTSFTLFLTIIFLISGDETENIEILEQIIVRPGEDAVIPCIHDEIIDGMTSWNKDQFLIANKNFVDPKYVRVEKKIVKDGIFNLLITDVREEDAGEYMCTVIAGCDGRSCSIHRTTKTKLVVFVPPEVNIVAKYELINEGESLNLTCEVIRGSPPPRIIWTRKSGKTFSLIGAHVLNIREASFDSIDTYTCTADNGAIDSASQRVNVNFETFLNYSSESDVSVSLGSSTTLLCAFVSSQNELEVTWDHNSVSDTQRVSNYEGITKVSQYVIKDITENELGVYECKTIDNIDYVTHQQFTLIASPIFKQFISKQKSRYSHKYVLKFEAISGEQMVDYRIFYRKQGSGTWKIKKFVTRTSIFSKKLYKEFVELSSLRSKTSYEVIVEPRNSFGKGRNSSIFSFQTSIKVYSVIHASAVQEVGVFSTILMSAIFYVLAV

Gene family

Gene family	Subfamily
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00047	ig	Immunoglobulin domain	Domain	Interproscan
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013151	Domain	Immunoglobulin	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR044635	Family	Ubiquitin carboxyl-terminal hydrolase 14-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43982	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061136	Biological Process	regulation of proteasomal protein catabolic process	Interproscan
GO:0070628	Molecular Function	proteasome binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-