Gene detail

Detailed information of OFRAG00000007904.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000007904.1	UNCHARACTERIZED	tig00001312	236240	245060	-

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000007904.1

ATGTTTCTACATGAGAAAACTGCAGTCTCACTTGAGAAAACAACAGATATCGAGTATATCATCAATTTAGCTGGACAAAATTGCAATGAAAATCCACTTCTAGCTGCTTCTAGTGGTTTAAACAGAATCAAGATATTCAACAGAGATAACTTGTCCATTATATCAGATATATCTGATGATCAAATACAAGGATCATGTGTTTGTTTTGCCAACAAAAACCCAAACTTACTCTTTACAAGTTGTAGCCTTGGTTCTATAAGATGTTACGATCTGAGAATTGATACAAAAAAACAAATTAATGAATATCAAGCTAGCGTTGACCTTCAACCCCACGCCTCTCACCAAATCTCCATAAATTGCGAGGATACTTTCCTATGTGCCGCATTCGATTCCAGTGAAGCCGAAGATGTTACCGTTGCATTCTGGGATGTCAGACAACCAACCATAGTCGGCAGATACAATGACTCATTCGGCGATCAAATAACTGAGATATGTTTCCACGATAACGACTCAAACAAGATCTTGATAGGAGCTATGGATGGTCTAGTGTCTTTGTTTGATATCTCCGCAGCTAATGAAGAGGATGCCCTCGTGACTTCTCTTAATCTGGATGCTTCGGTGAATCATACTGGTTTTACTGGAAAGAATAAAGAATATATATATGCTACAAGCCATATGGACTCTATTTGTATTTGGGATGGTGCTGAGTTTGATGAATTAAGAAGAATTGATGATACTAAATTAGAGCGAGAGGACGGTGTCATCATTGATTACATAGTAGATTGCTACGACACAATAGAACAGGAGACAATAGTTCTGGTTGGGGATCACAAAGGTAATCTACGACAATTGAAATTCACATCGAATGGTGACCTCATACCCTTGACACCTTACACCGACGGTCTCGGTAAAGGTCATCGAGAAGATATACGCTGTTTACACTATCATAGTGGCAATGGCAGCCTTGTAACTGGAGGTGATGATGCAATGTTGTGCATGTGGCGTGACCAAGTGCCACTGGTCAAAAGTCGAGCAAACACATTAAAGAAGAAAACAAATAAGAAAATTACAAAAAAGCAAATGTATTCGAAAATAAAATTTCACAAAGAGCGATCAGTAAAAGTTGAAACAGAAGTTAGTGATTATAATTATGTGAAAATCAAAGAAGGAGATTTGAGATTTGGACAACAGATCTTATCTGCAAAGACTAAAAAAGGACGCGACAAATGTGGCCTATGTCTTTTGGAAGGTAAACGTCTAATTAATGATGCAGTCAATGCTGGAGTCACCATTGCATCCATCTTCTTTACTCATAAGTCGTTGCTGCAATATATTCATGTGCCAGAGGGATCTGAATTATATAAAGTGGAGAACAGACATATGAAACTATGGTCAGATGTAAATCACACCTCTGGATTAATGGCTTTAGCCCAAATCCCCGATACTGTGGATCTAGACTACGAAGCTTTGCCCATCTCGCTCATTTTAGATCAAATAAGAGATCCTGGTAACATGGGAACACTATTGAGGACAGCCTTGGCTGCTGGATGTCATCAAGTCATTACTACAAAAGGGTGTTGCAATGTATGGGATGCAAAAGTTCTCAGAGCTGCTATGGGGGCCCACTTCCACCTTCCTATGGCGACATCTGTACCTTGGTCCTCTATCGAAAATCTCACCTCTCGCGACCCTAACCACGGCGATATCGAGCCCAAAGACACTCCTGTATTCCTTGCTACAAATCAGAGCGAAGATGTCAAACCTTCTAAGAAGTTAATTGCAAGTTTATCTGATCCATATCACGAACGTCCGTTTACTGAAAGAATAGAGTCTTCGTCGGGTATCTCATCTTTAAGATATATTGATCCCGCCTATGATGATGAGTCTCATTGTGCATTGTATAGACAAGCACCCCTGGATTGTAAACCATACCACACTGCTAATTTTTCTTCAAAAGGTTTAGTTTTGATTATAGGTGGAGAAACGGAAGGAGTTAGCGATCAGGCACGCCGTATGACCTTTGAGGGTAAAGGTCATGCAGTTAATGTGCCCATGTCAAAGTCAACGGAAAGTTTAAATAGTTCTATAGCAGCAGGAGTTATATTGTTTGAAATGAAAAGACAATTAACCATAGTTAAATAA

Transcript

OFRAG00000007904.1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00588	SpoU_methylase	SpoU rRNA Methylase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001537	Domain	tRNA/rRNA methyltransferase, SpoU type	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR029026	Homologous_superfamily	tRNA (guanine-N1-)-methyltransferase, N-terminal	Interproscan
IPR029028	Homologous_superfamily	Alpha/beta knot methyltransferases	Interproscan
IPR029064	Homologous_superfamily	Ribosomal protein eL30-like superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR039328	Family	WD repeat-containing protein 89	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22889	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0008173	Molecular Function	RNA methyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-