Gene detail

Detailed information of OFRAG00000005824.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000005824.1	RHO FAMILY GTPASE	tig00000891	292695	306964	+

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000005824.1

ATGGAACCAATGATTTTAAGATCCATGAAGTGTGTGGCAGTGGGTGATGGAGCTGTCGGCAAAACTAGCCTACTCATGGCATTTTGTACAGATATATTCCCAGAGCAATATTGCCCGACAGTATTCGACAACTATCAAATCACGTTGATGACGGACGGAATGCCTGTGAAACTTCAGCTCTGGGATACGGCTGGTCAAACGGGAACTGACCGCATGAGAAAACTAGCCTACCCTAAGACAGACATATTCCTGGTGTGCTATAGTGTCGTAAATCCGGACTCTTTCCACAATGTCACCAACAATTGGATACCAGAAATAAGGCAATTTAACCATGACACTCCCATCTTATTAATTGGGACAAAAACAGATCTCAGAGTAGATAAGAAAACTTGCAAAGATTTAAATCATCTCGGAGAGCATATTATACAAGAGAAACAGGGGAAGAAGTTGGCAGCGAAAATTGATGCCGTAAAATATCTAGAATGTTCGGCTCGCAGAGGAAGGGGATTGGTTGAAATTTTCAATGAAGCCGTTCAAGCAGTATTATTTCCAAAACATAAATCCAGCCAACCATGTGTTTCATGTATAAAAATCAATATAGCACGGTACATCTTACATTCTATGGTTATCGCAAGCTACGCTATGCTTAGTGTTTTGATTGTGTTTGCTATTTGTCTGCTATCTACAGAAACAATAGATTCGATATGCCCACCTACATTCGATTGTTCTTTGGATAATGATGGAGTTTTTCAGATGAGCTGTAAGAAAAACATAGAAAAACATTTACTAGGAAGATATGTAAATAATGTCATATACGTTGAAATTGGTATTGATGAAATGCCTACAAATGTTTCTAGACTTGAAATAAGCTGCCTTGGCGGCGATATTATTTCAAAAAGAATAACATTGAATTTACACTTTAAATATATTCCCCAACTTTTACATTTAAAACTCAGTGATTTAAAAATTGAAAACCCAGTAAATAATAGCATGTTTTCTAATAATATGCAACATTTAAAGACATTAACTATTTCCGGAATTCAAAATGAACTTTGGCCCGATTTATTTAATAAGCTGTATGAACTGAAAATACTGGAAATAGTTGATTCATATTATATTACATATATTGATGGTTTATTATTTCATGATTTGCGTTCTTTGGAGAAAATTGTACTTCAAAATCTAGGGCATGGTTCCTTTAGAATACCTATAAAGCAACTCGAATCAGCAATATCCGATTTAACCAGAGAATCCTCTAAGTTGGACAAAGTTTATCTGAATAAAATATTTATAAAACAGCAAACTTTATATATTGAGAATTTATTTGCATATAAAACTTCAAATATTACACAATTGAAATTAAATTCGAACAAATTTAAAATTGTTAATGGAAATCTGATAGAAACATTACCGAAACTTGAACGTTTAAGTATCACGAATAATAAATTCGTTAATTTAACTGTTATGTCTGCATTGTTCGCTAGCATACGCGGACATAGAGAATTAAAGTATCTGGATTTCAGCGATGAAACTCGCGTTCGTTTACCAAAGAAACACCTTTATATTTCGGCATTGAATTCTTTCAACAAATTAAAAAATAATGCATTTATGATTGAATTTCATAATAATTTAAGATCAATTGACATACATGGAATGGTAATATGGAATTATTTTGAAAATATGATATCTATAAATAATAAAAACTCGTTAAGGTATTTAGATATGTCGTCAGTACAATTTATTCAAGATATTACTATTAATTTTGACCTTGAAAAATTAGAATATCTTTCAATTCAAAATACAAATATGGTATTGAATAATGTATCTAGTTTAAATAAACTAATTAATTTAAAGACTTTATTAATGTCCAATAATGAAATTGGAGATCTTCTTTCAAAATCACGGAATCTATTCCAATCAAACATTTTACTTGAAGTACTTGATTTATCAGCATGCCAACTTGTGGATGGAATACCAGGTGAATTAATGATTCCTCTTTCTAACTTGAGGATATTTAATATTTCAAGAAATCGTCAACTTCGCAGCATTCAAGACATCAATTTTTCTATTCTTACTCATCTGGAATTGATTAATATGAGTGACTGTAATATACAACATTTAACTGCCGAGACCCTTCAACAATTCAATGGACTTATAAATCTAACTATCGATATATCGCAGAATAAAAAATTGAAATGTACAAATCATCTAATTAACTGGCTAAAACAATTGGAAGGAAGGAGTTCATCGATGTTTTCCAATATTAAAGATACGTATTGTGTTTACCAGAATGGGACTAAAGCCTTTTTCGAAAAAATATTAATACATAGAAAAAATATTGATAAAACAAAAGCGTGGATAAAAATATTGATTATTTTAATGGCTTGTATTATATTTACAATTTTACTACTAATTTTAATATGGAAAAGATATAAATGGACTTTGGCACTTTATCTTTACAACAGGAAAAAGAAATATAGAAATAAGAAAATGCCGCCAAATCACATGGAACGTATATTCGCATACGATACATACATATGCTATTCGAAAGGGGACAGGAATTGGGTATTGCATACTCTCGTGCCTCGATTAGAATCTTCTGGGCTAAGAACTCTGATACACGAGCGAGACTACTTACCCGGTGCCATAATTGAAAATGCAATCCAAGAATCTATAGATAATTCGCGTTGGACTATACTTGTAATAACCAAGAATTTCTTAGCAAGTGAGTGGTGTATGAGAGAACTGCAGTTAGCCAACGTGGAAAATACGAAGAGAAAAAATCACCAAGATGTCGATAAACTTAATTTCGACGATCTGGTCATACCCATCGTACTCGATTCCAAATCCACTTGTATCGAAGATATCGCTACGGCCGGTATTCTTCACCAATCCTTCCTACAATGGCCCATGGATTCTTTATGGACTCGAGGATTAGACGATAGAATGAAACTCTTCTGGGATAAACTAATCACCAAACTTAAAACTGGAGGGAATTTAAAAAGAAAATCCTAA

Transcript

OFRAG00000005824.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan
PF13676	TIR_2	TIR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000157	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR001806	Family	Small GTPase	Interproscan
IPR003578	Family	Small GTPase Rho	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24072	RHO FAMILY GTPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-