Gene detail

Detailed information of OFRAG00000005770.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000005770.1	PAIRED BOX PROTEIN PAX-6-RELATED-RELATED	tig00000871	420208	476969	+

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000005770.1

ATGGTGAACTTATCTGACCTATCTTTATCCATAGAAGCTACGAGCTATGGCGAAGTAAACCAGTTGGGAGGAGTTTTCGTGAACGGGAGACCACTTCCAAATTCATGTCGAATCCGTATCGTGGAACTTGCCCAACTGGGTGTTCGACCGTGCGATATAAGCAGACAACTCAAGGTATCGCACGGGTGCGTTTCAAAAATACTGGCAAGATACCATGAAACCGGAAGTATCCTACCTGGAACAATAGGCGGGAGTAAGCCAAGAGTAACAACACCTCACGTAGTCGACGCCATCAAAATTTTTAAGGAAAAAGATCCAGGAATATTCGCTTGGGAGATCAGGGATCGTTTGATTTCCGGAGGAATATGCGACAAGTATAACGTTCCTTCTGTAAGTTCAATTAGTCGAATTCTCCGCAATAAGAATCCTCAAACATTTGATTTCTTACCGAAATACGAACCGGAAATTCAAACTGCGAACACCGAATTCACCAGAACCGCATCTTTCGCCTTTGGAGCTACAAATGTACCTTTGTTCTCGGCATCATGCGCACAACATCCGGTATCGTACAGTGGATTGCCGATAGCTTTAGACCAACATTTGTCGGCGATTCATTGGCCGTCTACTGTTTACGAGTACATGAGATGGCATCATAACGGACTCTCAGTAGACCAGAGCTTAAAACTGGAAAATTTTACTGTTATTAACAATGGACATTCTATCAAGGTCAAAATAAATGATCTTAATCACACTATCTCCGGGGGGTGTCTGTTTAAAGACTATATATTACTGGAATTCCACTTCCACTGGGGAGGAGACCTTCAACATGGCTCCGAACACACCATTAACGGCAAACAGTTCCCATTAGAGATGCATATGGTGTTTATGAGATCTGATATCAAAGACTACAGTAAAGCACTGGTCACTAAACGAGGACTAACTATATTAGCAGTTATATTTGAGGTCGGAACAGAGGAGAATAAATCTTACAAACCGCTTCTCAATACAATAAGAAATTTCAATATACCCAATAACAATACATCGATTGATATTAATGAAATAGATCTAGGCATGCTTCTTCCAGGAAATTTGAAAGACCACACGAATATAACGGATTATTTTACCTATCATGGCAGTTTGACTACATATCCATGTTCAGAAGTGGTTGTATGGAACATTTTAGCGAAAAGTGTGAAAATGAATTCGAAACAAAAACTCAACGATCGCGACGTTCAACGGAGTTTTGAGCGTTACGGTTTCGCACTACTGGACAACCAATCATGCAATAATAAGACACGGAATCCTGTAGAGATGAAATACAACATGACTTTCAACAATAAGTTTATGGATGACTCAGAAAGCGACTGGAGTTCGTTTTCTACGACATGTTCTTATTCATCTATTTCAACATTGTCAACTTCCTCATCGGATATCAGCCTCTTGGATACCGACGATGAAGACTCAGATGAGGAAATGGCAATAATAGAAAAGGATAATATACTGAATCATAAAATACTATTTGAGGCAGAGAAAAATAAAATGCTATTTAGTAAGAAGATGGGGTTTCAAAACTGTCTAGAATACAACGAATGGCAGAGAACTAGGCCGTCAAGATCAATAAGACATTTCATCAAGAAGAGCCTGCTATACACAATAAGTGGTCGGATGTCATTTGGACGTATATCATTATCGGATCTTATTACAGAATACCTGCGGAGAAGAAGAACGACTCGACAGGGCGTGTCCAGCGTGGCCCTATGCCTATGTTTATTAATTACAACATTATCTCTCGGATACCCACAGCATCAACACAGACACAGACCCAGAAACATAACGGTGAAATCGCAAGGAGACAGCAACATTGATATATCCTGGGATCCACCTCGCGTTAACAAAAGGAAATGTGATATAATCAGTTATTTCATAACGGTAAAGCGTAAAGGAGAACGCCAAGTAAAGTCGATAGAAGTCACTTCCGACTACAGAAACCACAGAATAACGGGATTGGTGAAAAACACCAAGTACCTAGTGCGTTTGCAAACCAACACATGTAAAGGTAAAAGCATTCCTACTAAATGGTTTCGAGTATACACGTCTTCCGATAAGATTACTCCCAGAGTACCGTTAGAGGTGCAAATAGACTCTACGACATCCACTATAACACTCTTCTGGGAGCCTCCGAGTTCTGGTAAAGTCGACAAGTATAAGATAGGATATGGACTATCTATACCGGATACGCATTGGTTCTATGCTTTATCCACTTCCCGTAATGCAACCATCTTCAGTCTGGTTCCTGGAAATACTTACATTGTAAGTTTGAGAGCTGAATATGACAATGTTGAAGGAGAGCGTGTATTGCAAGCTATCTCAACCAAGATCCAACGTAAAGTAATGCAGCCAATCGATCTATATGTCAAAGATGTCCAAGCAACGTCCCTATTCTTGACTTGGAAGGATCCGGATCTGCATGATAATCATGTTCCCGAGAAAAGATCCTACATTATAATGTACAAAGATTTTGAAATTGAACAAGGTGCGATTACTACGACCCATTCGAAGGAAAACTCAATATTACTGAGGGACTTGTCTCCAGGAATAAATTACGAAATCAAGGTGATTACTGTTGATAAGAATGGGGATGAGAGTATGTCTTCACTTCCACTATTCGTGCAAACATTCGAATCCGCCCGCTCCAATAAAGTTGCCAGCGAGACGTTGTCGTTGACGAGGCGCACGAAACGTAAAATGGAGCGATTTCGTACTCGCCTCGCCCACCACATCACGGCCGTTGTCTCGTGGTCCGAGAACATCGACGCCCGTTCCTACGTGCTGCGCTTCCACGAGCAGGCGAAACCGCACGACGCCCGCCTCATAAACACCAACGACAACTTCGCCATGCTCGACCGACTGGAACCGTATCGCGTCTACGAGTACCAATTGAAAACGGTTCGGCACGACGACACGCAGTCGGAGTGGTCGGACGTCGGCAAACTAAGCACCCGCGACGAACTCTGA

Transcript

OFRAG00000005770.1

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	PAX

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF00194	Carb_anhydrase	Eukaryotic-type carbonic anhydrase	Domain	Interproscan
PF00292	PAX	'Paired box' domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001148	Domain	Alpha carbonic anhydrase domain	Interproscan
IPR001523	Domain	Paired domain	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR018338	Conserved_site	Carbonic anhydrase, alpha-class, conserved site	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036398	Homologous_superfamily	Alpha carbonic anhydrase domain superfamily	Interproscan
IPR043182	Domain	Paired DNA-binding domain	Interproscan
IPR043565	Family	PAX family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45636	PAIRED BOX PROTEIN PAX-6-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0004089	Molecular Function	carbonate dehydratase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0048856	Biological Process	anatomical structure development	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-