Gene detail

Detailed information of OFRAG00000005527.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000005527.1	AUTOPHAGY-RELATED 2, ISOFORM A	tig00000841	152470	192585	-

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000005527.1

ATGCCTTGGTATTTTCCTTGGTCAGATTCCATAAAGAAAAGAGCAAGTAGATATTTATTGCAACATTATTTAGGACAATTCTTGAAAGAAAAATTAACACTTGAACAACTAAGTCTTGATATTTACAATGGGAAAGGTACAATACAAGAGCTAACGCTTGATGTTGAGTCTCTCAATGAATCTCTGGATACGATAAAAGTTCCATTGGAAGTAGTCGATGGATTCCTCGGAGAAATTTGCGTTTGCATCCCGTGGTCGTCGCTTTTGACGGACAGCACAACAATTGAGATCACCAATCTTGAACTAACGCTGCAGACGAAGAAATGGCCTTCCGATGCTGATCTTAGTGCCGGATTGGATTCGATGTTTGACTCGATGACGACGTCAATTCGAATGGCTGAAGAGTGTCTTAGGGATACAGCTTCACCAGGTGATGGTGATGTTCCTTGTGCGAAAACAATCTCCGAAGCTGAGATGCAACGGCCTACTTTTGATGGCCTAGAAATGTTTGCAAAAACTATAGAAGCTGTATTGTCGCGGGTAAAGATTTGCCTCATCGATACCGTCATCAGATTGGAACATGTACCAGAGAACTCCAAAACTGGTATTGCTCTCGAGTTAAGAATAAAAAGGATGGATTACTTCGATGACGAGATCTACAGTTGTCCCGAACTCGAACACAGACCCGTCTACACTACCGCCGCCACCTGCCTTAAGAATTTCCGATTACACAAAGCTCAATTGTACTTTGATGAATTCACAATTGCTGTAAATAGAAGTCTTTACAAATCAATGATGAACAAGATGTCGGAATCAATTTCTGATCCTATTCTGAAATCGACATATTACGACGCGTCGGCAGATAATTTGTTTGCTTCAATCACTAAGTCTAGGCCTGTAAAGGTCGCAACCTTAAAAGGTCAACAGGAAGTTAAACTTCGTATCAGACAGAATCACAATTTACCATTACCTAAGATTCATATAGACTGTCAATTTGGTCTACTACACATGCATTTCTCACCTAGTCAAATACATCACATTACAAAACTATGTGCTTCTCTCACAGAACAAGAGCCAAGAGGTACAGTCTCTCACCCCATGGTTGGTAAGGATTATGCTAAAGTTGAACAATTGCTGATGAATGAATCTGTGGACATTGATAACGATGAAAATCTTTATTGCAACACCGATAATTCCGAGACGTTTAACAAATTGAATTTCTGTTCAGACACAACTGGTGACAGTATGATTGAGGATCAGTTGAACTCAGTTAATCAAGATTTGCAGCTGAAATTAAAGATCAGCTTTATTTCCGCTATTATACTTCATGAAGATCCTGCATCTCCTCCCGGCGACACATTAGATTCCAGCCAATCCGGAATCTCGAAACTGGAGCGAGTTGCGGATTCATACTTTGCGAGAATTGAATCTTTGCGACCGGCCGGAGTGGGAGTCCCCCTACAAGAAGTAGCAAGTGGTTACTCTCAGTGCTGTCGACATGACCACTTGTGTTTGATTGGTAAACCTCTAACTGTTGAAATGGACAAAAGTGTAGCACGTTTACGACTGCACCTCGATATCGGAGATTTGGAATTCGACGAGGCCGTGTTTGACCGCTATCTGGTTACCATGGCAACTAACTTCTCGCGCACGCTCACCCTCGACCAATCGGATTGCTTCCTGAAGCCACAGATTTCCCAGCTACTCAGTTTTCCCTGCGAGGACGTTACAACGACATCAGATCCCGACCCTTCGACCTTTACGATGACCTCTAGCGTGTACACCGCGACGAAGTCTTGCATTCGCCTCTCCTACACGGACGCGACTAATAACCCGGGTGATACGGAAATTAGTCGACCGTGTCTGTTCGTCGAAGCGAGACCGTGCCGCTGTGAAATCGACGTCTCCATCGTTGACCGAATCCACGAGCTGTTGAATCCTCAGCCCCTCGCTTCCGGAGATGCGTTCGGCGCGACCCCTGCCTTCAATTCCGACCTCATCTGGTCGACGAAGAATGAGAATCCCACTCTCTCGAACGCGGACGATTTCCAAAGCGATCCCCTTGAACTCAAGGTCGCCGTGGAAAACATCAAAGTTCACTTGAGATTTCCAATACCGGACCTTCGTACGAATATCCAGGGTATTGGTAAACCTTGGTGGCGTCGTAATATCCACCCCGAAATTGCCATATTTGACCTTATTGACCTTTCGATGACCTTACCGGATATTCTCTGCATAGACTCGTGTGAAGTACAAATGAAATGCTCTCAGATTACCATTGCATTTCAAACTTCACCGAAAGCAACTCCTGTTCAAATTGTTAAAATCATGGAAAATGAGAATTCTATTAGCCTCGCAATAAAAACTTCTCAGGTGCACCCTCACTTTCTTGTACCTGAAATGGATACATGCACCACTGAAAGGTCGTCGGATGACTTCAACTTTGACATTCGGAATAGACGACCCTCACCTTTCTCTCGGCATTGCTGCATGTACGACAATGAACAGTTAATCATTCCCAACGATGGTCAAGAAATGCTTGATTATTCGGAGTTCTCAATGGAAAATTCTTTGCTAACCTTCGACCTAAACCTACCCTCTATTGAAATTGAGCTTCTCGACAAACCCCTTTTTGAACTACTTTATAATCGACTGTTCAACGACCTAGTTATCTGGCAACCAGCCGCTCCATCCCCTTCCATAACCTCGAATATCAGCCAACATAACGAACACGGGTCAAAGTTCAGTGGATTGAAATCACGAGGAAAATCTTGTCACTACGACACAGATAGTGATTCAGATGATGACACAACAACCTCCACAACCTTCAGTCGATTTCACGACGATGAACCCGGCCGACCCCAGCCCCAGAACTCCGCTGCAATCCATTTGTTCATCGGTCACGGTTCAATGATTTGTTCAGCAGATACTGACGAAGCAAATCAGTCTGATCCAAGAGAACTTCGTTTTGATGTGCGAGGAGGAGACATGACAATATCTCTCGACATAGGTGGTGATACGTCACTTCAAGAAATTGCAATTGCAACTAAATCTCTTGAACTCTGGTGCATTGGAGGTAATAGCGACGACCAATCTCCATCTCGTGGCAAGACAATCTATCAACCTGACGACACGTTATTCAGTAAAGAGAATTCATTCTCCCTGGCAATGAAAATCACGAGTGACTTTAAGAACAACGTCAAGGATTGCCTAGTATCTGTAGACATCAAAAAATCCTCTCTGAATCACATCATGTGCAACCCTCAGAATATGTGGATCATGAAGCTTATCGAGTTCTTTACGCTGATTGACCTCGAGGTTATGGGCTACACTGCTCCCTTAGTGTTTACAGAATTACATCTGCACCTCAACAACTGTCAAGTAGATTACAGTCCTATTTACCTGCCACTACGTGCAGCCCTCACCGTGGATAGTTTTAGTATTACCAGCAATATTGTCGTTGACTCACCAATTTCTGTTCTCAGATTCGTAGCAGATAATGCAGCTTTGCATATTAGTAATAAATGTGAAGTAAAAGACATAGACCTTATAAACAACTATATTAGAGTAATTGATGTTGGAATGTTTGAATTAATAATGCGTACAAGTACAGATAAGCAATATCCAAAGCTTGACCTTCGGGCTTCCAATGACCTAATCCGCATCTCTACGTGTGTTGACACATGTCGTGCCCTGACATCTCTTATCTCTTATCTGGCCGCCGACGGTGACCTTTCAAAAGACACGCCCTATCAACCCGAAGAACCTGACACCATTTTTACCCCTGTTCCCAAGAGCGTTTCCGCTGAAAGTCTCTCGAAAGTGGACATAGATCGGGTGAATTTCATGATGAACGAAGCCATGCACGAATCCACTGACAATAATACAGATAGCAGTTCCAATGACACACCAACGCAAGAGTCTGAATTGTTTTTCTATGCCAATGAGATGGCCTCATCTCATGTGTCGCTACCTGGTAGCAAGAATTACTCGAAGTCCACTCCTGAAAGGAACTCGGAGAAAACTATCGACATTCTCTATGATATAAGTGACATCGAGGGGTCGAATGAAACAGATGAAATGACGGATTCGAGGTCTAACCTGGCAGAGGATTCAATCGATGATGATTATTGTATTATAGAATATGATCAGAATATCGACCGTACTTCAACACACATCAAGAAGTTATGTAAAGATGAAATTATAATCATTGAGAACTACTTGAGTGTTCCTAAAACACAAACTGACCAGTTGCTAGCTCCTGCCCACTACCCGAATCCAATTACAAAATACACCGTGGATGAAATGTCGTTAGTCTGGCAGATCTACGGAGGCTACGATTTCAAAGAGGTGGAGGTGAACTCCGATGACATTTACACGGAAATTAAGTTTTCAAATGGAATTGTGGATATTTCGAAGAATAAAACAAAGACTTTTAAGTCTTGCCGCGATAACAAAACTTTAGTCGAACTTCACGTCAATAAATTGAGGTTCCAGTACGACCTTTACGGAGAGCCCTGTAGTGGTGCCCCCTACTATGCCCAGAGGTCGCGGCAGGCATTCCTGATATCTGATCTAGAAGTACATGATCTCCTGGCTACCTCTTCTATTAACAAACTGCTTTACCAATACACAACTACAGACCTACCCAAACAGTCTCACTCGAATATGATTTGCGTAAAGGCAGTTCAACAGCAGGTGGATCAAAGTAGAAACATTCAAGAATGTTCCGTCAAAGTCTCACTTCAACCTATACGCCTTAATATAGACCAGGATTCTTTATTCTTCTTGAAATCCTTTTTCACATCATTGGTCGATAGTTCCGTAAATGAATTTGAGAAATCGGATGTTTTAATAGCATCGCCACCAGGTAGCGCTCCCAGTCACATTGAGCCGGTGATGCAAGTAGGATTAGAGAATCCTGTAAATGAAGATTTAGACATCAAGGAATTGAACCAGGCCAAACAGGATTGCATTGCCCATGGCATTTATGTGAAATTCGATGAGTTGTCCGAACAGGAAAGCCTGGACGGAGAGGAAGATGAAGATAGCCAAAGTCATGATACAATCAGCGAAGGACATACAAGCGAAGATGTAGATGCTCCAATATATTTCAAGAACTTTATCTTCTCTCCGGATGTTCCGATTAGACTCGATTATCACGGAAAGAGGGTGGATATGAAGGAGGGAACCCTGGTAGGTCTTTTGGTTGGATTGGGACAGTTGAACTGCTCGCAACTGAAACTGAAACGCCTGCACATTAGACATGGAATCCTTGGAGTTGATCGTCTTGTCCATTATATTTCCAAGGAGTGGTTGGAGGATATCGTAAAAAACCAACTGCCTAGTATTCTAGGGGGACTGGGACCCATGCACTCCATCATTCAACTAGTGAAGGGAGTTTGCGATCTCGTCTCCATGCCCATCGAACAATACAAAAGAGACGGCAGGATCCTACGAGGACTCAGACGAGGTGCCAACAGCTTCGTGACCTGCACTGCAATGTCCGCCCTCGACCTCACAAATCGTTTGGTGCAGTGTGTCCATTTTATAGCGGAGTTGACTTATAACATGTTATCTCCGGGTCCAAGTTGTCAGTCGTTGAAGCGTCGTCGTCGCCGCCGCCAGGGTAAAAACAGCAGCACCGTTGCTCAACGCGCTTATCGCAAACGCCGGCAGGATCGCGTTCCCATCTACCCGGCTGGAATCTACGATGGTTTCAGCAATGCTTGCCACCTGGTGTCCGAGGGCGTTAAAGATACTGCTAGTAGCTTTGTACAGGTAGCTAAAGACGAACATGAAATTAAAGGATACACCGGAGCAGTGGGAGGAGTGTTGAGGCAAATTCCTTCAGCAATTGTTCACCCAGTTATCCTTGTAACAGAAGCAACAAGCTGCGTCTTGGGAGGCATGAAAAGTCAGCTATTACCTTCGAGTAGAAAAGATGATCAGGCAAAATGGAAACAAGTGAATTATCAGGAAAATTCTGTAATCGACAACCTTCCCATCTAG

Transcript

OFRAG00000005527.1

Protein

OFRAG00000005527.1

MPWYFPWSDSIKKRASRYLLQHYLGQFLKEKLTLEQLSLDIYNGKGTIQELTLDVESLNESLDTIKVPLEVVDGFLGEICVCIPWSSLLTDSTTIEITNLELTLQTKKWPSDADLSAGLDSMFDSMTTSIRMAEECLRDTASPGDGDVPCAKTISEAEMQRPTFDGLEMFAKTIEAVLSRVKICLIDTVIRLEHVPENSKTGIALELRIKRMDYFDDEIYSCPELEHRPVYTTAATCLKNFRLHKAQLYFDEFTIAVNRSLYKSMMNKMSESISDPILKSTYYDASADNLFASITKSRPVKVATLKGQQEVKLRIRQNHNLPLPKIHIDCQFGLLHMHFSPSQIHHITKLCASLTEQEPRGTVSHPMVGKDYAKVEQLLMNESVDIDNDENLYCNTDNSETFNKLNFCSDTTGDSMIEDQLNSVNQDLQLKLKISFISAIILHEDPASPPGDTLDSSQSGISKLERVADSYFARIESLRPAGVGVPLQEVASGYSQCCRHDHLCLIGKPLTVEMDKSVARLRLHLDIGDLEFDEAVFDRYLVTMATNFSRTLTLDQSDCFLKPQISQLLSFPCEDVTTTSDPDPSTFTMTSSVYTATKSCIRLSYTDATNNPGDTEISRPCLFVEARPCRCEIDVSIVDRIHELLNPQPLASGDAFGATPAFNSDLIWSTKNENPTLSNADDFQSDPLELKVAVENIKVHLRFPIPDLRTNIQGIGKPWWRRNIHPEIAIFDLIDLSMTLPDILCIDSCEVQMKCSQITIAFQTSPKATPVQIVKIMENENSISLAIKTSQVHPHFLVPEMDTCTTERSSDDFNFDIRNRRPSPFSRHCCMYDNEQLIIPNDGQEMLDYSEFSMENSLLTFDLNLPSIEIELLDKPLFELLYNRLFNDLVIWQPAAPSPSITSNISQHNEHGSKFSGLKSRGKSCHYDTDSDSDDDTTTSTTFSRFHDDEPGRPQPQNSAAIHLFIGHGSMICSADTDEANQSDPRELRFDVRGGDMTISLDIGGDTSLQEIAIATKSLELWCIGGNSDDQSPSRGKTIYQPDDTLFSKENSFSLAMKITSDFKNNVKDCLVSVDIKKSSLNHIMCNPQNMWIMKLIEFFTLIDLEVMGYTAPLVFTELHLHLNNCQVDYSPIYLPLRAALTVDSFSITSNIVVDSPISVLRFVADNAALHISNKCEVKDIDLINNYIRVIDVGMFELIMRTSTDKQYPKLDLRASNDLIRISTCVDTCRALTSLISYLAADGDLSKDTPYQPEEPDTIFTPVPKSVSAESLSKVDIDRVNFMMNEAMHESTDNNTDSSSNDTPTQESELFFYANEMASSHVSLPGSKNYSKSTPERNSEKTIDILYDISDIEGSNETDEMTDSRSNLAEDSIDDDYCIIEYDQNIDRTSTHIKKLCKDEIIIIENYLSVPKTQTDQLLAPAHYPNPITKYTVDEMSLVWQIYGGYDFKEVEVNSDDIYTEIKFSNGIVDISKNKTKTFKSCRDNKTLVELHVNKLRFQYDLYGEPCSGAPYYAQRSRQAFLISDLEVHDLLATSSINKLLYQYTTTDLPKQSHSNMICVKAVQQQVDQSRNIQECSVKVSLQPIRLNIDQDSLFFLKSFFTSLVDSSVNEFEKSDVLIASPPGSAPSHIEPVMQVGLENPVNEDLDIKELNQAKQDCIAHGIYVKFDELSEQESLDGEEDEDSQSHDTISEGHTSEDVDAPIYFKNFIFSPDVPIRLDYHGKRVDMKEGTLVGLLVGLGQLNCSQLKLKRLHIRHGILGVDRLVHYISKEWLEDIVKNQLPSILGGLGPMHSIIQLVKGVCDLVSMPIEQYKRDGRILRGLRRGANSFVTCTAMSALDLTNRLVQCVHFIAELTYNMLSPGPSCQSLKRRRRRRQGKNSSTVAQRAYRKRRQDRVPIYPAGIYDGFSNACHLVSEGVKDTASSFVQVAKDEHEIKGYTGAVGGVLRQIPSAIVHPVILVTEATSCVLGGMKSQLLPSSRKDDQAKWKQVNYQENSVIDNLPI

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09333	ATG2-VPS13_C	ATG2/VPS13, C terminal domain	Domain	Interproscan
PF12624	Chorein_N	VPS13-like, N-terminal	Domain	Interproscan
PF16909	VPS13_DH-like	Vacuolar-sorting-associated 13 protein, DH-like domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015412	Domain	Atg2/VPS13, C-terminal	Interproscan
IPR026849	Family	Autophagy-related protein 2	Interproscan
IPR026854	Domain	Vacuolar protein sorting-associated protein 13-like, N-terminal domain	Interproscan
IPR031645	Domain	Vacuolar protein sorting-associated protein 13, DH-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13190	AUTOPHAGY-RELATED 2, ISOFORM A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000045	Biological Process	autophagosome assembly	Interproscan
GO:0000407	Cellular Component	phagophore assembly site	Interproscan
GO:0000422	Biological Process	autophagy of mitochondrion	Interproscan
GO:0006914	Biological Process	autophagy	Interproscan
GO:0032266	Molecular Function	phosphatidylinositol-3-phosphate binding	Interproscan
GO:0034727	Biological Process	piecemeal microautophagy of the nucleus	Interproscan
GO:0044805	Biological Process	obsolete late nucleophagy	Interproscan
GO:0061709	Biological Process	reticulophagy	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-