Gene detail

Detailed information of OFRAG00000004689.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000004689.1	MDM2-BINDING PROTEIN	tig00000714	107759	114127	-

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000004689.1

ATGGAGTATTATATTTTAATTTCTACTGAGAACTTTATAGGTTCTAATGAATTCTATAATAAATGTTCTGTCAACTTATTTCATCAAATTGAGAGTTCATCAGAGGTTAGAGTTCATGTCATGTCTGAGAGTTTGGCTAATAACGACGACTGGATTACTGATGAAATTGGTGTCAAAGAACGTTTACAAAATAATTTTGGTGCATCTTCAGATTATATATCTTTTAAACTACATTCGCTAGCTGATTGTTTAATTGAGAAGGATGTTAGAATTTTGAAATTATTTTGGTTTATTGATAATAATATTAATCTGATTCTTGATAAAACAATTCATTTATATGGAGCTTTGTTAAGATTTAAGAATTGGCATGGAGCCAAACTATATTTGATTGATCAAAATTATATAGATATTTCAAATTTGTCATACCACTGGCAAGTTTGGAAAGAAAAAGTTTCAATGTTTTACGGAGGTTTTCAAGAATTTTGCAATCTACACTCAATTATTTTGAATCCGGAACATGACAAGATTATTCCTTTTCAACTTTCTCAAATTCATGAAAATTGCCATCTTGAAGGAATTTTTAGTGGCTACACATTTTTCAAAGGATTTTTAAACTATAAATCTATATCTAAGAATTTAATTTCTACAGATTATTTCAAATTTGATTATTCAGAAACAGAATGGCATTGTTTTGAAAAATTACAAAACAATAATGATATTGCTGCTTTGTTGGAAATACCATATAGTTTTACTCCAATCGAATGCTTCAACGACAAAAGATACACACGAAATAATGCTAGAAGTGGATTAAATTGGAGAAAGTACTTCGTCGATAATACAGTAAACAACCATAATCAGGTTTTAAAGATTCGGGCAAATTATAATCAATCCTACTTCTTTATTGTTACTACAGCAAACTTACAAAATAAGTGTGAATTGATTGCAATTAGGATGAAATATGGTTTCCAACTTCACGAGGCCTTTGAACCTATTCAATTGCAATACAACTTAACTGCAACCAACAACCAACCATTGATAGAAGATTCTCCAAGTTCTGAATCAATGAATGATTTTGTAATTCCAGTAATTCATGGAATTGAAGATCACCTGCAGAAATGTTTAAACAGAGCAAAACAATACATATTTGAGAAATTAGCAGATGAGAATGGAAATATGCGTATCAGTAAAGAACAATACATTCAAGTTATGCAAGAATTAGAGATAAAATACTTAAAGGATATGTCATCTAATAAAGTACAATATCAGGCTATTTCAAAAGAAAATTACCTACTTCCTCTTCTTAAGCCAATACAAAGAGATAATGATGCTATAAAAGATAGAATTGAGTGGAAAAGACTTAGTAATAGAAATGAAAATAAAAAGAAAAAAATAATTGAACTCTCTCCCCCAAATCAAAATGAAATTCGAATCACTGCAGCTGAATTTATAAGAATTTATAAAGAAAATAATTCAGAGTTATCACCTTTGAATACAAATTCGGATTGTAAAACCTATTGTAATGTGGAAAAGCAACTTACACAACTTAAAGAATACCCTTTAAACATCAAGAAAAGATGTCACGATATCTATTATGAAAATAGGGAAGAAAATTTCGAAGCAGAGAAAGTTTACAATGAACTTGTCAAAAGACTTCGTTCTATTGAAACAGATTCAACCCTAGGCACAGATCAAAACCAAACATTTTTACTTTCAATTAATTCAGAAATTCCTTCGGGCACAATTCTGAGTAGCAGAAAGTTCAGAAATTCAAACAGTTCGCAGAGTTCTAGAAGTAAGGAGCCTATAAATGTGCACTCGTGTAACATAGCTTCAAACAGTAGAGTTGCAAGACTTAGAAGAAATGATTGTTCCAGAAGTAATTCACTTTCGTCTTCGCCGAGAACTACTAAAAGTAGCGATGTAAGGAGCGTTTTCGAGGGACCAGATGAACAAATCATCAGAACAACTTCTTCTCAATCATCGGAAACTTGTGATAATCATGACATGCTAAGAAGATCATCCTCAATAACTCTCAGCAATTCTGCAACTCCATTTTCTACTCCTGCTTCAGTAATCTCAAATATGTCTGAATCAGAAAAAAGAAAAGCTAAATCTGACAAACATAAATTAATCTTGCAAGACGTTGTGACAAGTTTACTTAAAGAGAAGAAACTAACAAGTAGACATTCCATTTTCAATAAATGTGCCTCACGTCTCTATAAACTTACAAAAAGTTACATCCAAGATATCAAAACATCTTCGAATATAAGAGAAGACATGTTAAATATTGCTAGATCTCATGTGAAAACTGTTATTGAATTTGAAAAGAAAAATAAATAA

Transcript

OFRAG00000004689.1

TTATTTTTGTTTTCTCATATGGAGTATTATATTTTAATTTCTACTGAGAACTTTATAGGTTCTAATGAATTCTATAATAAATGTTCTGTCAACTTATTTCATCAAATTGAGAGTTCATCAGAGGTTAGAGTTCATGTCATGTCTGAGAGTTTGGCTAATAACGACGACTGGATTACTGATGAAATTGGTGTCAAAGAACGTTTACAAAATAATTTTGGTGCATCTTCAGATTATATATCTTTTAAACTACATTCGCTAGCTGATTGTTTAATTGAGAAGGATGTTAGAATTTTGAAATTATTTTGGTTTATTGATAATAATATTAATCTGATTCTTGATAAAACAATTCATTTATATGGAGCTTTGTTAAGATTTAAGAATTGGCATGGAGCCAAACTATATTTGATTGATCAAAATTATATAGATATTTCAAATTTGTCATACCACTGGCAAGTTTGGAAAGAAAAAGTTTCAATGTTTTACGGAGGTTTTCAAGAATTTTGCAATCTACACTCAATTATTTTGAATCCGGAACATGACAAGATTATTCCTTTTCAACTTTCTCAAATTCATGAAAATTGCCATCTTGAAGGAATTTTTAGTGGCTACACATTTTTCAAAGGATTTTTAAACTATAAATCTATATCTAAGAATTTAATTTCTACAGATTATTTCAAATTTGATTATTCAGAAACAGAATGGCATTGTTTTGAAAAATTACAAAACAATAATGATATTGCTGCTTTGTTGGAAATACCATATAGTTTTACTCCAATCGAATGCTTCAACGACAAAAGATACACACGAAATAATGCTAGAAGTGGATTAAATTGGAGAAAGTACTTCGTCGATAATACAGTAAACAACCATAATCAGGTTTTAAAGATTCGGGCAAATTATAATCAATCCTACTTCTTTATTGTTACTACAGCAAACTTACAAAATAAGTGTGAATTGATTGCAATTAGGATGAAATATGGTTTCCAACTTCACGAGGCCTTTGAACCTATTCAATTGCAATACAACTTAACTGCAACCAACAACCAACCATTGATAGAAGATTCTCCAAGTTCTGAATCAATGAATGATTTTGTAATTCCAGTAATTCATGGAATTGAAGATCACCTGCAGAAATGTTTAAACAGAGCAAAACAATACATATTTGAGAAATTAGCAGATGAGAATGGAAATATGCGTATCAGTAAAGAACAATACATTCAAGTTATGCAAGAATTAGAGATAAAATACTTAAAGGATATGTCATCTAATAAAGTACAATATCAGGCTATTTCAAAAGAAAATTACCTACTTCCTCTTCTTAAGCCAATACAAAGAGATAATGATGCTATAAAAGATAGAATTGAGTGGAAAAGACTTAGTAATAGAAATGAAAATAAAAAGAAAAAAATAATTGAACTCTCTCCCCCAAATCAAAATGAAATTCGAATCACTGCAGCTGAATTTATAAGAATTTATAAAGAAAATAATTCAGAGTTATCACCTTTGAATACAAATTCGGATTGTAAAACCTATTGTAATGTGGAAAAGCAACTTACACAACTTAAAGAATACCCTTTAAACATCAAGAAAAGATGTCACGATATCTATTATGAAAATAGGGAAGAAAATTTCGAAGCAGAGAAAGTTTACAATGAACTTGTCAAAAGACTTCGTTCTATTGAAACAGATTCAACCCTAGGCACAGATCAAAACCAAACATTTTTACTTTCAATTAATTCAGAAATTCCTTCGGGCACAATTCTGAGTAGCAGAAAGTTCAGAAATTCAAACAGTTCGCAGAGTTCTAGAAGTAAGGAGCCTATAAATGTGCACTCGTGTAACATAGCTTCAAACAGTAGAGTTGCAAGACTTAGAAGAAATGATTGTTCCAGAAGTAATTCACTTTCGTCTTCGCCGAGAACTACTAAAAGTAGCGATGTAAGGAGCGTTTTCGAGGGACCAGATGAACAAATCATCAGAACAACTTCTTCTCAATCATCGGAAACTTGTGATAATCATGACATGCTAAGAAGATCATCCTCAATAACTCTCAGCAATTCTGCAACTCCATTTTCTACTCCTGCTTCAGTAATCTCAAATATGTCTGAATCAGAAAAAAGAAAAGCTAAATCTGACAAACATAAATTAATCTTGCAAGACGTTGTGACAAGTTTACTTAAAGAGAAGAAACTAACAAGTAGACATTCCATTTTCAATAAATGTGCCTCACGTCTCTATAAACTTACAAAAAGTTACATCCAAGATATCAAAACATCTTCGAATATAAGAGAAGACATGTTAAATATTGCTAGATCTCATGTGAAAACTGTTATTGAATTTGAAAAGAAAAATAAATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14920	MTBP_C	MDM2-binding	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048	Domain	EF-hand domain	Interproscan
IPR029418	Domain	MDN2-binding protein, C-terminal domain	Interproscan
IPR039061	Family	MDN2-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14382	MDM2-BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000776	Cellular Component	kinetochore	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0007089	Biological Process	traversing start control point of mitotic cell cycle	Interproscan
GO:0031396	Biological Process	regulation of protein ubiquitination	Interproscan
GO:0034501	Biological Process	protein localization to kinetochore	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-