Gene detail

Detailed information of OFRAG00000004532.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000004532.1	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED	tig00000684	224446	243437	+

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000004532.1

ATGTCAGCTACTGACAACGGAGTAGCAGATATAGCTGAGCTCGAGAATGGTGATAACGAAGTTGAAGAAACAGTAGGTTTCATTGATTCGCCGTCTTCAAAGAAAAATAAGAAACGCAGGCATACCAACGAGGGTTCCAATAAGAAGGCTAAAAAATCGAAGAAAAACAAGAATGTCAAGTCCAAGAGTGATAATATTGAAACTACGGTGACTTCTGTATGTGACGTGGCTACAGCACTGGCCCTCGCAACTGCGGGAGATCCGGAAGTCGAAGAGGAAGGTGATCCTCAGAATAAAGTTGCCAATGCCCTTTTAGCTGCCAGACGGAAGAGATCCAAGTTTCCCACAAAGACAGCCGACGAGGTGTGCGCGGAGTTGGGCCTCAACAACGTCGAGTTGGAATACATGCCCGAAGACTTTGAAACCCTGACGTCCCACAAAGCCTTCAGTGCCCATATTCGACCCCTCTTGGCCGAGGACAACCCTAATGTACCTCCTTCGAAACTGATGCCCTTGGTGTCTGCGAAGTGGAGAGAGTTTACAGCATTGAATCCCGATAAAGTCGATAAACCTTCAATAGGTAGAAAAGAAGAAGCGGATAGTTTTGATGATTCGAACTCCGCTTTAACCGGAGGAGAAAACAGTAATGACAACCAGAGTGCGGACGGAAGAATTGCAGCTCGAAAGGCTCGCATTGCCGCCGCAATGGCTTCGGGACTCGCTCCTGTGGAAAAGGTCAATAAGCGAGCCGTTGCACCGCTCAAAATCAAACTTGGCCGCAAGAAGAAAAAAAAGAATAGCTCGGATGAAGAGAACAATGGGTTTAATACCAGCGACGAGGAGTTTGAGAGACAACTTGCGGAAGCTGCCGTCATTCAAGCCGAAGAAAAATTCATCCGAGACAAGATACCCAAGATGAAGAAGGGAAGAGGCAAGAATGCCCGTAAAAAGGGTTTGAAGACTTTAGTTAGCGGCGTCATTTCGCACGCCCTCAAGAAAACTTCATCCTTCCCAGTTGGACTCGACACAGAAGGGTTCGAGCAAACTGACCATCAAGACTACTGCGAAGTGTGTCAACAAGGTGGCGAGATAATACTCTGCGACACGTGTCCAAGGGCCTACCACTTGGTATGTCTGGAGCCCGAACTGGAGACTGCACCCGAGGGAAAGTGGATGTGTCCTCATTGCGAAGAGAATGGTCCTCCGAATGCAGAAACCCATATTGAAGTGCAAGTTGAGGAAACTATAGAACCTCAGGTGGAAGACACTCACGCAGAGTATTGTCACAGCTGTAAAGAAGGAGGAGACTTACTGTGTTGTCATACATGCCCATCTTCCTATCACATCGACTGTCTGATTCCAGTTCCAAAGGAACCGCCGACTGCTAGCTGGCAATGTCCGAGATGTTCTTGCGAGGCGTTGACTGGAAGAGTTCATAAGATCATGACTTGGCGTTGGCGTGAACCTCCGCAAGTCGAAGATGAATTGGACCACGTGACACCGCATTCTCCGTCGAAAAAGCAACCAATTGTCACTGAACGCAAACAACGCGAATTCTTTGTGAAATGGCACGAAATGTCTTATTGGCATTCCGAGTGGATCACGGAATTGCAGTTGGACGTTCATCATCCCGCAATGTTTCGTAACTTCACGCGTAAATTTGACATGGATGAACCTCCTCCATTGGAAGATGGCAGTACTTATGGTAGGAATGGGGGAAAAACTGAAGATGATCCCCATAATTTGGAGGAGAGATTTTACCGTTACGGAGTACGACCTGAATGGCTACAGGTCATGCGTTTAATCAACCATAGGCACGTAAGAGACGGAACCACGTGGTACCTCTGTAAATGGAGAGATTTGGGATACGATCAAGCCACCTGGGAGAGCGATGATACAGATATCGTTGACATGCTTCAGATGATCGACCAATACCACATTCACAGACAAATGGTAACTGGATCTAGTGATAGAAAGAAATCGAAGGGAGATAAAAGCAAATTCAAGAAGAAAGTAAAGAAAGACGATGACGAAGAAAGAGTTATTCAGATCATTAAGAAACTCACTCCCCCGACGAACCCGAGCGTCAACCTCTCCGAGAAGTTCCTCGAACAGCCCGAATACATCAACGTCACCGGGGGCACCCTACACGAATACCAACTTGAAGGCATTAACTGGCTGAGGTACTCCTGGGCAAATAACACCGATACCATTCTGGCCGACGAAATGGGACTCGGCAAGACCATTCAGACCATTACCTTCCTAAACTCGCTCTACAAAGAGGGTCATTGTAACGGTCCCTTTCTTGTTGGAGCTCCGCTGTCGACCATTATAAACTGGGAACGAGAGTTTGAACTCTGGGCTCCCGATATGTACGTGATTACTTACACCGGAGATAAAGACAGTCGAGCTGTCATCAGAGAACACGAATTCTCGTTTGAGGATGGATCGTCGAGAGGTGGAACTAAAGCTTCAAAGTTTAGAAAAGATTGCAAGATCAAGTTCCATGTGTTGCTAACATCTTATGAATTGATAAGTATTGACACAGCTTGTCTTGGATCTATTGAATGGAAGGTCTTAGTAATTGATGAAGCCCATAGATTAAAGAACAATCAATCTAAATTTTTCCGGATTATGCAAGCATACAAAATAGACTATAAGTTATTATTAACTGGTACACCCTTACAAAACAATCTGGAGGAATTGTTCCATTTGTTGAATTTTATGTCACAAGAAGAATTCTGTAATTTAACTGAATTCTTGGAATTGTTTACTGACATATCCAAAGAAAATCAAATAGTTAAACTTCACGAAATGTTGGGTCCTCATTTATTGAGACGTTTGAAATCCGATGTTTTAAAAAAAATGCCTTCTAAAAGAGAATTTATCGTAAGAGTCGAATTATCTCCATTACAAAAGAAATACTACAAATATATTTTAACGCGAAATTTTGATGCATTAAATGGACGAGGAATGAGTCAAGTTTCATTGTTAAACATCATGATGGATTTAAAAAAATGCTGCAACCATCCATACCTATTCCCAACTGCAGTTGCTGAAGCGCCTAAACTTCCCAACGGTATGTTTGAAGGCAATGGTATGGTAGCGGCATCTGGAAAACTGGAACTTATGACACAAATGTTACACAAACTACATAATCAGGGACATAGGGTGCTAATATTTTCACAGATGACGAAAATGCTAGATATTCTCGAAGATTATATGGAATCTCAAGCTTTTAGATATGAAAGAATTGATGGAAGTATAACTGGATCAGTGAGGCAAGATGCAATCGATAGATTTAATGCTACCGGATCTCTTGCATTTGCTTTCCTTCTCTCCACGAGAGCCGGTGGTCTTGGTATCAACCTCGCTACAGCCGATACCGTAATCATCTACGATTCGGATTGGAATCCCCACAATGATATTCAGGCATTTAGCAGAGCCCATCGAATTGGACAGAAAACCAAGGTCATGATATACAGATTCGTGACCAGGAATTCTGTTGAAGAGAGGATAACCCAGGTTGCAAAGAGGAAAATGATGCTCACTCACTTGGTAGTCCGACCTGGAATGGGGAAACAAGGGGCGTCCATGTCTAAACAAGAGTTGGATGATATATTAAAATTTGGAACTGAAGAACTATTCAAGGCTGAGGATAGTAATCATGAAAACAATGATAATCTCATTGTTTATGATGATAAAGCTATTGAGCATTTACTCGATCGATCGCAGGAAGTTGTCGAAGAAAAGGAAATGGAAATGAATGAGTATTTAAGTTCCTTTAAAGTAGCCACATATCAAGTAAAAGAAGAGGAAAAGGAAGAAGAAGAAGTAGAGATCTTGAAGCAGGAGGCAGAACAGGCTGATCCGACTTATTGGGAAAAGCTGTTACGTCATCACTATGAACAACAGCAAGAAGACTTGGGAAGATCTCTTGGAAAAGGCAAACGAGTCAGAAGACAGGTCAATTATAATGATGCTTCATTGGGAAATGATGAAGAACACTTTGCAAATCTTTCAGATTTTGATTCTGACTTTTCTCAACAACCTCCAGAAGATGACGACTTTGAGGAAAGTGGAAAATCTCAATCGAACGCAAAGTCTCGAAAGAATAAAGGCCGGGACACGAATAATGAAGATCGTCCTCTTCCTGCTCTCTTGGCCCGCATTAATGGTCAAATTGAAGTATTGGGCTTTAATACGCGACAACGAAAAGTGTTTTTGAATGCTATGATGAGATATGGTATGCCACCTCAAGATGCCTTCCATTCTCAATGGTTGGTTCGGGATCTGCGAGGTAAATCTGAAAAGGAGTTCAGAGCTTACGTTTCACTTTTTATGAGGCATCTTTGCGAACCGGGTGCTGATAACACTGAAACTTTTGCTGACGGTGTTCCAAGAGAGGGTCTTAGTCGCCAACATGTCCTTACGCGAATTGGAATTATGTCTTTAGTCAAGAAAAAGATACAAGAATTTGAAATGATAAATGGTCCGAAGAGTATGTCCGATCCAATTCTTATTAAACCTGAAACCAAACTCGAAGATATATCTAAAAAAGAATCGGAAATTAAAACTGATATACCCGAGGCAGAGAAAACAAAGACTGAAAATGAAACTAAACAAGAACTCAATGGAGTTTCAGATATTAAGGAAGAACCTAAAGCAGAAACTACGGATACTTCGGAAAATAGCATTACTAAGTCAGAAAAAGAGACAGAAGAAATCCCTAATAATGGAATATCGCAAAATGAAAATATTGAAAATAAATCAACTTCAGTAATACATAAAAAAATAGATATATTGGATCAAAAGTTTATGTTCAATATTGCTGATGGGGGTTTTACAGAATTGCATACTCTATGGCAGAATGAAGAAAAAGCTTTAAAAGGAGATGGAGCAGTCGCAACTGATGTATGGCATCGTAGACACGACTACTGGTTATTAGCTGGTATTGTTAAACATGGCTATGGCAGATGGCAAGATGTTCAAAATGATGAATTGTACCTACTCATCAATGAGCCTTTCAGATCGGAACAAAACAAAATTGGAAATTTTTTGGAAATGAAAAATAAGTTTCTAGCTCGTAGATTTAAACTCTTGGAACAAGCTTTGGTAATCGAAGAACAACTGAGAAGAGCTGCATATCTAAACCTTACTCAAGATCCGTCTCATCCTGCAATGGCTTTAAATGCTAGATTCGCAGAATTGGAATGTTTAGCGGAGAGTCATCAGCATTTGTCCAAAGAATCTTTAGCTGGAAATAAACCCGCAAATGCTGTACTACACAAAGTTTTGAATCAACTTGAAGAGCTTTTGAGTGACATGAAACAAGACGTAAGTCGTTTGCCATCAACTCTGGCAAGAGTAGCACCTGTCACTCAAAGATTGTCAATGTCTGAACGTTCTATATTAGGTCGTCTTGTTAATCCGGCCATCTCGTCACAAAAAGCATCTGAAATTACGAAAGCTTCGATAACAACTCCTCAAATGGCTTCTCATCCATTTAATGCTGCAAAGAAAGGTACAAATGGAAACTCGTCGCAAGTTATTAAGGCTAGAACTGCTACTCCTCCTTTGAACCACCTCGGATCCGCATCGCAAATTTGTTTTGTTAATCGGTGCACAAGCGATATTCGAGATCGCGAAAGAAAAGAGCATCCCAATAAACCGTTTCACTTTCATCGGATACCGAAGGACGAAGCCTCCAGGGCATTATGGGTCAAGGCAATTGGTGACGCCGTCTCTCTCAATGTAGAATCGAAGGTATCTTCAAACTCGCGAGTATGTTCACTGCATTTCAGAGAAGCCGATTATTCGTGGACATCTGAAAGACACCGTTTGAGAGTGGATGTTTGTCCGAGTCTACATTTAAACATGCTTCAATACCTTAACACTAGTAAGACTCCGACTCCAGCAACTACTTCTACATCGGAAGAAACATCTACATCTATGCCAAACCCCGATGTCACTCCGATTGAAACTGTTACAAATACTACCACCACTACTACTACTACGGCAAATGCTAATATAAAGAAACAAGATTCTGCTGCTATTGCAGTTGCAAAATCTAATCCCGATATTGATGAAACTAGTGCAACAATAAATATAGAGACATCTCCTTTACAAAACACCAAAGAAAATAAATCTACTGGCGAAATTGATCTTAGTTGCAATTCAGAAAAACCAAGTAATGAAGACATAACCGATACGCATACTGATTACAATCCAAAGAAACCTGAAGACAAATAA

Transcript

OFRAG00000004532.1

Protein

OFRAG00000004532.1

MSATDNGVADIAELENGDNEVEETVGFIDSPSSKKNKKRRHTNEGSNKKAKKSKKNKNVKSKSDNIETTVTSVCDVATALALATAGDPEVEEEGDPQNKVANALLAARRKRSKFPTKTADEVCAELGLNNVELEYMPEDFETLTSHKAFSAHIRPLLAEDNPNVPPSKLMPLVSAKWREFTALNPDKVDKPSIGRKEEADSFDDSNSALTGGENSNDNQSADGRIAARKARIAAAMASGLAPVEKVNKRAVAPLKIKLGRKKKKKNSSDEENNGFNTSDEEFERQLAEAAVIQAEEKFIRDKIPKMKKGRGKNARKKGLKTLVSGVISHALKKTSSFPVGLDTEGFEQTDHQDYCEVCQQGGEIILCDTCPRAYHLVCLEPELETAPEGKWMCPHCEENGPPNAETHIEVQVEETIEPQVEDTHAEYCHSCKEGGDLLCCHTCPSSYHIDCLIPVPKEPPTASWQCPRCSCEALTGRVHKIMTWRWREPPQVEDELDHVTPHSPSKKQPIVTERKQREFFVKWHEMSYWHSEWITELQLDVHHPAMFRNFTRKFDMDEPPPLEDGSTYGRNGGKTEDDPHNLEERFYRYGVRPEWLQVMRLINHRHVRDGTTWYLCKWRDLGYDQATWESDDTDIVDMLQMIDQYHIHRQMVTGSSDRKKSKGDKSKFKKKVKKDDDEERVIQIIKKLTPPTNPSVNLSEKFLEQPEYINVTGGTLHEYQLEGINWLRYSWANNTDTILADEMGLGKTIQTITFLNSLYKEGHCNGPFLVGAPLSTIINWEREFELWAPDMYVITYTGDKDSRAVIREHEFSFEDGSSRGGTKASKFRKDCKIKFHVLLTSYELISIDTACLGSIEWKVLVIDEAHRLKNNQSKFFRIMQAYKIDYKLLLTGTPLQNNLEELFHLLNFMSQEEFCNLTEFLELFTDISKENQIVKLHEMLGPHLLRRLKSDVLKKMPSKREFIVRVELSPLQKKYYKYILTRNFDALNGRGMSQVSLLNIMMDLKKCCNHPYLFPTAVAEAPKLPNGMFEGNGMVAASGKLELMTQMLHKLHNQGHRVLIFSQMTKMLDILEDYMESQAFRYERIDGSITGSVRQDAIDRFNATGSLAFAFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQKTKVMIYRFVTRNSVEERITQVAKRKMMLTHLVVRPGMGKQGASMSKQELDDILKFGTEELFKAEDSNHENNDNLIVYDDKAIEHLLDRSQEVVEEKEMEMNEYLSSFKVATYQVKEEEKEEEEVEILKQEAEQADPTYWEKLLRHHYEQQQEDLGRSLGKGKRVRRQVNYNDASLGNDEEHFANLSDFDSDFSQQPPEDDDFEESGKSQSNAKSRKNKGRDTNNEDRPLPALLARINGQIEVLGFNTRQRKVFLNAMMRYGMPPQDAFHSQWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADNTETFADGVPREGLSRQHVLTRIGIMSLVKKKIQEFEMINGPKSMSDPILIKPETKLEDISKKESEIKTDIPEAEKTKTENETKQELNGVSDIKEEPKAETTDTSENSITKSEKETEEIPNNGISQNENIENKSTSVIHKKIDILDQKFMFNIADGGFTELHTLWQNEEKALKGDGAVATDVWHRRHDYWLLAGIVKHGYGRWQDVQNDELYLLINEPFRSEQNKIGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLTQDPSHPAMALNARFAELECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKQDVSRLPSTLARVAPVTQRLSMSERSILGRLVNPAISSQKASEITKASITTPQMASHPFNAAKKGTNGNSSQVIKARTATPPLNHLGSASQICFVNRCTSDIRDRERKEHPNKPFHFHRIPKDEASRALWVKAIGDAVSLNVESKVSSNSRVCSLHFREADYSWTSERHRLRVDVCPSLHLNMLQYLNTSKTPTPATTSTSEETSTSMPNPDVTPIETVTNTTTTTTTTANANIKKQDSAAIAVAKSNPDIDETSATINIETSPLQNTKENKSTGEIDLSCNSEKPSNEDITDTHTDYNPKKPEDK

Gene family

Gene family	Subfamily
Transcription Factors Family	THAP
Ubiquitin Family	E3\|E3 activity RING\|PHD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00385	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan
PF00628	PHD	PHD-finger	Domain	Interproscan
PF05485	THAP	THAP domain	Domain	Interproscan
PF06461	CHDII_SANT-like	CHD subfamily II, SANT-like domain	Domain	Interproscan
PF06465	DUF1087	CHD subfamily II, DUF1087	Domain	Interproscan
PF08073	CHDNT	CHDNT (NUC034) domain	Domain	Interproscan
PF08074	CHDCT2	CHDCT2 (NUC038) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR000953	Domain	Chromo/chromo shadow domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR001965	Domain	Zinc finger, PHD-type	Interproscan
IPR006612	Domain	THAP-type zinc finger	Interproscan
IPR009462	Domain	CHD subfamily II, SANT-like domain	Interproscan
IPR009463	Domain	Domain of unknown function DUF1087	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR012957	Domain	CHD, C-terminal 2	Interproscan
IPR012958	Domain	CHD, N-terminal	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR016197	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR019786	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR023780	Domain	Chromo domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038441	Homologous_superfamily	THAP-type zinc finger superfamily	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR049730	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45623	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000785	Cellular Component	chromatin	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-