Gene detail

Detailed information of OFRAG00000004475.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000004475.1	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	tig00000671	153204	170751	+

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000004475.1

ATGAGCTCCAAAAGAACCACGAGATCCGACACCAAAAAAGATAGAACTCCGATGATCGGCCACCTAGCCACCAACATGGAGGAACTGAATGAACTTTCCGAGATTGATAAAATTGACCTCATGAAAAATATAAAACGCTACAGCAACAGTCTGAAGAGTCTGTTTAAAAAGGGCCAATTCTTCATCAAAAATCATAGAGCGGAAGATGCCTATGTCATGTTCATGAAGTTCTGTGCGATCTACCTAGAAATTTCGAAAATAGATCATTCGGAAACAGACTTCGACATGAATTATTTCACAAGTCTGTATTATAATGATTTTAACTCTGCAATGACCGAAGCTGGAAAACTCTCAATGGAGTTGATGTCTAGATATTCGGAAATGAACAAAATAAATTCCGATGATATAGACCAAAGTTTGCAGAAAGATGAAGACTTAAAAACTGAAGTAAAGGTTCCGGATCCTATAGAACCACAAGTTAGGAGTATCAGCGTTAAAGAGGTCTACCGCTTACTGTCTGAGGGTAAAGACCTTCTGCTCGTCGATATCCGGACCGAAGCGCAGTATGAAGCGTCACGTATCGACTCACCAACTTCCATCAACATCTCAGCTGACAAACACATCAGCAAGAGTTGCACCCTGACCAAGATCCGAAAACTATTGACACCCAAGGTGTGTGAACGTTTCCGTAATTTTCAGCGTTACCACACCGTTGTGGTATTTGATTACGATGGGACCTACTCTGGCATCAAGCCCTTCATGAAACTCAACAGCATTCTCGAAGCCTTCACTAAGTGGGACAAGCCTACCACTTGCCACCCGCTGGTTATGGAGCTCGGTTTCGAGGAGTGGAGCATGCGATACCCGACTAAAACGCTGACTTCTACATGTCCCAATGGTCGTAATGACAACTCCTCTGCGATGTTCGACCACGATGATGATCTTTCCAAAGCTTACACCCCATTAAACAAGATCAACTACGACCTGAACATGGGGTCAAATGCGAGGCCTCCCTCTCGCGATACTAGTGGTGTGGAACGTCAATCCGGCTACAACGGCTACAACCATGCGGATGGGGGAGGGGGAAGAGCAGCAACGGGAGGAGGAGGGAGTAAAGAATATAGTCGACAACTGAAACCCGACCATCACGGGTCCCAACTGGCTGCTATTCACAAAAGTAATTTGAAAACCAAGGAAAACAATCAAATATTTTATGAAAACTCGCATGATATAAATAATCTTAACAAAAAAATGCAAAAGACTTACATAAGCGATCCTTCGAAAGAAGATAAACTTCAAAATGGGGCTGGCAACCGTAGAGAAGATTCTCTTGGTAGAAAGGACATGTCCGCTGTAAACAATGAAGAGAGAGGAGCATCTTTAACATCGCATGTTAGAACCACCTATAATGAACCAGCAGAACCTGAATTGCAAATGAAATCAATGTATCCGAGTGTTATCGCTCCGACAAAGCCATATGCACCCCTAGATCACACCCTTTCTTCACGAGACCGCACCTCTTCACGAGACCACGCCCCTTCTTCACGAGACCACGCCCCTACCTCACGAGACCACGCCCTTTCTTCGCATGACCAACTATCTTCCTGTGATTCTACAAATTCGGCGCGGGCATCCGTTCTATCCTCTCGAATCCATGCCCCCTCTTCACGCGACTCCACTAAACAACATGTCACCTCGCCTTCATCGTCTGACGTACAGATGACCCCTACTGCGACCTCTACCTCCCATCAAGTCGACGACAAAGAAAATGACGATGTTGATGGTAGCGATGTTAGGGCCGCAGATGTAGGTGGCGGGGTTATCAGAACCGCCGAAGCCACGTTGAAGCCGGCGAGACGTGCTCAGTCGAGACCAGCCCTGCCTCACCCGAGCACCAAACCGACACATCTAATGGACCCCATCGAAACTTCCTCTCGGTCCCTTCCGGAACCTCCGATGATCCAGAAATCGTCGAGGTCTAACTTACGGCGCTCTCACTCTTCTCCGAATGTCGCCAAGATGGAGGCTGATAATGACTCTCAGGACTTGTCATTAGAAAACTCATTTGGACATCCGCCCTCAGTCGATCGTACCACCAAGAAATTCGCATTAAATATGAAACTCAGCAATTCTAGCATTTTGAATACCGCTCGAGTTAGAAACTTTGGCGTAAAACTTGGAATTGTGGAGAAAGGTGCTACGGGTCTTAGGAATATGGGCAATTCTTGTTACATGAACTCCATCATTCAATGCCTCAGTAGTATTTATAAACTGCGTACATATTTCAGCAGCGATCAGTACAGAGAGGACATTAACGTTTATAACAAAATGGGATCCAAAGGTGCTATGGCCACTGAGTTTGCTGAAGTCATCAAATCACTGTGGAGTGGTCAATACAAATCAATAACCCCTATTGACCTCTATACCACCATCACCCGGCATCGGTCTGATTTTGCCGGTTACACCCAGCAAGATTCTCAGGAACTATTGGGATACCTGCTGGATAGTCTTCACGAGGACTTAAATGGGGTGGTCAAGCGAACAGTAATCCCCGAACAGAACAATGACAGCTACTCGGACATCGTGGCCGGAGACAAAGCCTGGTCGAACTATCGTCTAAATAATTCCTCCTTCATCTTTGACAACGTCATGGGTCAATTCAAATCGTCCATCACCTGCTTGAAATGCGATTATACTTCTGTAACTTTTGATCAGTTCATGTTCCTGTCCCTTCCCCTCATCAATAAGACAACTGACATCAAGATTTGCATTCAGAATTTTCACAAGAAAGAATTGATGACTAATGGTTCACGTTGGTTCTGTCCTCGATGTTCCAGTAAACAAGATGCTTCGAAACAATTAGTCATTTGGAGACTGCCGCATATCTTGCTGATACAATTCGTTAGATTCGAACAGGAGGGCCGTTGGCGAAGTAAGATCAACTCGATGGTTCACTTCCCAATACTGTTGAACATGCGATCATACGTCCAGGGACCTTGCAAACGTTTTAACTATGCTCTGATGGCTGTATCGAATCATTTCGGACGTTTAGAAGGTGGCCATTATACAGCTTTCGGCCGGAATAAAGAGAAATGGTATAGTTATGATGACCAAGACGTCTGTTCTATCGATTGTAGGGATGTCGAGACGAAGAATGCCTACATCCTGTTCTACGTCTGCGAAAACTAG

Transcript

OFRAG00000004475.1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF00581	Rhodanese	Rhodanese-like domain	Domain	Interproscan
PF08969	USP8_dimer	USP8 dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR001763	Domain	Rhodanese-like domain	Interproscan
IPR015063	Domain	USP8 dimerisation domain	Interproscan
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR036873	Homologous_superfamily	Rhodanese-like domain superfamily	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR050185	Family	Ubiquitin carboxyl-terminal hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21646	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-