Gene detail

Detailed information of OFRAG00000004282.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000004282.1	SPHINGOMYELIN PHOSPHODIESTERASE	tig00000642	160309	174712	-

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000004282.1

AAATCTTTATATTTTGAATCCATTATAAAGTATTTAAAAAGTTGTATATATAATAGCTATACTGATTCGAGCAAAGAACCCCATAGTACTGAGTATAAATGTAATGAAACAGAAAAATATACTATTTGTAATATTAATGAAGGAGAACTTGTAGATAGTGGTGATCTTCAACAAGACAAATTAATTTATAATGAGAAAAACAAAAAATACAAGAAAAATTATAAGAAATCATTCTATTCTCTACTATTCACATTTGCCGGACTATTGTTACTAAGCTATATCGTGTTTACAATCGCCAAATGCTGCAATAAACTGCACAACGAATCTCCTATTGATTACATAATCAGAGGTCCCCCTCTTTTGCGAGGACTAAGTAAATGTGAAATCTGTGAAGCTGGAATTACAGTGATTCAGTCATTACTATCGATGAACAAAAGTGAGAACGAAGTTGCTAAAGGAATAACCAACTTTTGCATTAGATTGCGAATTGAAGATAAAAAAATCTGCCAGGGGATTGTGAATGTGTATAAGATTGAAGTGCTAACTGTAATTGATAATTTGGCATTAAGTCCGTTGGTGTTGTGCGGATTGATACGTATGTGTCCATATGTAAAGAATCCTTTCCCTTTATGGAATGTCACTTTTCCAAACGTGCCAAAACCCCCCTTGGAAGAATACAAAGAGTCGAACAGACCTGCACTTCTGGTTCTGCAGTTGAGTGACATTCATATAGATTTCAGCTACTCCGAAGGCAGTGAAACTCTATGTTCTCAGCCTGTGTGTTGCCGTGGTAACCAAAAGCAAAACATCTCCAGCTCCGTTATTCAGCCTGCCGGACGATGGGGCATGTATAGAAATTGCGACACACCTCCTGCACTCGTAGATCATTTATTTTCGCACCTCGCCGCCACCAGGTGGGACTACATTATATGGACAGGTGACACCCCTGGACACAATATCTGGAACCAGACACGAAAAGTTCAACTGAATACACTGGACTACATCACGAAGAAGCTTGCTTCAACATTCCCGGGGGTAAAAGTTTACCCTGCACTAGGAAATCACGAATCTTCTCCGGTAAATAGCTACCCACAACCATCTGTTAAGGGCTCTGGATCCGTTCAGTGGTTATATGATTCTCTGGCTAAACACTGGCAATTTTTGGGTCTCTCTAAAGATACTGCCTATAATATAACTAGAGGAGGTTTCTATACTGAACTAATAAAGCCTAAATTCAGAGTGGTTTCCTTGAATATGAACTACTGTAATACCCTAAACTGGTGGCTGCTTCTGAACACCACTGACCCTGCAAGTCAGTTGCAGTGGTTCATCGGTATATTACAGAAAGCAGAAACCTCGCATGAAAAGGTACATGTCATAGGTCATATCCCCCCAGGCTCCGGTGATTGTATGAAGGCATGGAGCTGGAATTACTACAAGATTGTGAATCGTTATGAGAACACTATAACCGGGCAGTTCTTTGGTCACACACATTTCGACACTTTCCAAATGTTCTACGAAGACGAAAATAATCTCCCAATTACACCTGCCCCCGGAGTCTCCTCAATTTCATCTTCATCCTCCGCTACCTCGAAATACAAATCTACTTCTGCACCTGCGGCCTCCCAACCGAATGATCGTCGGTCTACTTCTCATTCTTCACGGCCTCCTCCTCTCTCCCCGACCCCTGACCTCTCGATCGATCTTCGCCGGCCTACTTCTGTGGCCTACATAAGTCCTAGCATTACAACTTACAACAACTTGAACCCCGGATACAGAACTTACAACATTGATCCAAAGTTTTATCACGTATTGGATCATACTACATTCATTATGAATTTGAGTGAAGCCAATGCTGGCAATCCCAAATGGAAAAGAGAATATTCTGCAAAGGAAACATACAACCTAGAAAATCTCTCTGTTCAGTCTTGGGATGCCTTGATCAAACGATTCTTTGTCAATGATACACTGTTACAAACGTTCTACAACTACTACTGGAAGTCGCATGCTATTGTGCCATACTGCAATACGAAGTGTAGAAATTCCTACGTATGCGAAATAGTTTCGGGCAGGAGTCACGACCCCAACATCTGTATGGGACTAAACGTCACAGAAGACGAGTACAGAAACTATACGATGGCAAAGAAGTTCTGTTGA

Transcript

OFRAG00000004282.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00149	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan
PF19272	ASMase_C	Acid sphingomyelin phosphodiesterase C-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004843	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan
IPR008139	Domain	Saposin B type domain	Interproscan
IPR011001	Homologous_superfamily	Saposin-like	Interproscan
IPR029052	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR041805	Domain	Acid sphingomyelinase/endopolyphosphatase, metallophosphatase domain	Interproscan
IPR045473	Domain	Sphingomyelin phosphodiesterase, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10340	SPHINGOMYELIN PHOSPHODIESTERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0005764	Cellular Component	lysosome	Interproscan
GO:0006685	Biological Process	sphingomyelin catabolic process	Interproscan
GO:0008081	Molecular Function	phosphoric diester hydrolase activity	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0046513	Biological Process	ceramide biosynthetic process	Interproscan
GO:0061750	Molecular Function	acid sphingomyelin phosphodiesterase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-