Gene detail

Detailed information of OFRAG00000003556.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000003556.1	DNA POLYMERASE CATALYTIC SUBUNIT	tig00000555	16634	32836	-

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000003556.1

ATGTCAACACAGAAGTTTACCATGGATAATAAACGCATAGCTATTGGAAATATTCCAAAGAAGTTTAAGAAATCGAAATTAAATGATGAAAAGCCAGCATTTGAAGATGAATTAGCCTTGCTACATAAGGATGAAGATATTTCTGAAGATAAATGGCCGAGGAAGGATCCACCAAATATCGATGTAAAGAAAGAATCATTGACTTTTCAGCAAATTGACATGGATTCTTACATAGGAGATCCGATGAAGGGCATGTTGGGTTCTCAGAAAGGTCGAGTTCCCATTGTACGTATGTTTGGTTGTACGGCTGGTGGTAACAGCGTCTGCGTGCACATTCACGGCTTCTCTCCGTACTTCTATGTGCCGGCGCCAGATGGCTTCAAGCGAGAACACTGCACTCGCTTCAGGATCGCTCTGAACATGCTCGTGATTCGCGACATGAAGTCGAATCGCGATAGCATCGAAGACGCCGTCCTCTCCGTCGAGGTGGTCGCCAAGTCCAGCATATACGGTTACCAAGGTAACGGCGTCCGCCAGTTTCTCAAGCTGACGATGGCGTTGCCGCGGATGCTTTCAGCGGCGAAACGACTCCTCGAGAACGGACTAAACATCGACGGATACCCAGCACAGAGCTACCAGGCCTACGAGAGCAATATAGAGTACGAGATCAGGTACATCGTGGACACTAAACTAATCACCTGCGGTTGGATAGAACTACCAGCCGGTCAGTACGCCCTGCGTTCGGACACGTCTCACTGCCGCCAACACTCGGTGAGACCTTTGACCCGTTGCCAACTGGAGGTCGACATCGGTTGGCAGGAGGTGATATCCCATTCGCTGGAGACCGACGTATTTAGTCTCATCGCACCCATCCGCATTCTTAGTTTCGACATCGAATGCACCAATCGTAAAGGAATCTTCCCGACTCCGGAACACGACGCCATTATACAGATTGCTTCGATGGTTTGCCTCCAGGGGGAGTCTGAACCGTTCATTCGAGTCGTGTTCACACTTGATACTTGCGCTCCTATCATCGGCGCAGACGTAGTCAGTTTCGATAATGAAAACGACATGCTCGCGAAATGGGCACATTTTGTCCGCGAAGTTGATCCTGACCTCATTACCGGATACAACATTCAGAACTTTGACTTCCCGTACATGATTAATCGGGCCCATAAACTCAAGATCCGAGACTTCGACATGCTTGGCCGAGTCGTCGAGAATCGAAGCTACGTCAAGGATGCGATGTCCCAGTCGAAGCAGATGGGCCGTCGAGAAAACAAATCCACAAACATCGAAGGCAGAGTTCAGTACGACATGATGCAGGTGTTGATTCGCGATCACAAATTGAGGTCGTATTCGTTGAACGCCGTATCTTATCACTTCCTCGGAGAACAGAAGGAAGATGTACACCACAGTATCATCGCTGATCTTCAGAGAACCAATTCGATAACTCGTCGTCGATTGGCTGTTTACTGTCTTAAAGACGCCTTTTTGCCTCTTCGTCTCATGGATAAGTTGATGTGCATTGTAAACAGTGTCGAGATGGCCAGAGTGACCGGTGTGCCGATCTCGTATCTGCTGACCAGAGGTCAACAGATTAAGGTCGTCGTCCAGCTGCTCCGTAAGGCTCAGTGCCATGATCTTATAATGCCGGTACAGAAAGTTGAAGTTGGAGATGAATTTACAGGAGCTACAGTCATTGATCCGGATAAAGGCTACTATTCGATGCCGATTACTACCCTGGATTTCTCGTCGCTGTATCCCTCGATTATGATGGCACATAACCTTTGTTACACCACGCTGATTAATGAGGCCTATATTAAGAAGCATGGACTGAGTCCGGATTCATACATCAAAACTCCTTCCGGAAACTATTTCGTGAAGGTTTCACTCAGGAAAGGAATCCTTCCCGAGATTCTTAATGATTTGCTGACTGCTCGTAAAAAGGCGAAGTTTGATCTGAAGAATGAGACGGATCCGTTTAAACGTCGAGTTCTCGACGGACGGCAGTTGGCGCTGAAAATTTCAGCGAATTCTGTTTACGGATTCACCGGAGCTCAAGTCGGCAAATTGCCTTGCCTCGAGATCTCCCAGAGCGTAACGGCTTTCGGTCGATTGATGATCGACAGGACTAAACAGGAAGTTGAAGAACGCTATACCATCGCAAATGGCTACAAGCACGACGCCAAGGTTTGA

Transcript

OFRAG00000003556.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00136	DNA_pol_B	DNA polymerase family B	Family	Interproscan
PF03104	DNA_pol_B_exo1	DNA polymerase family B, exonuclease domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006133	Domain	DNA-directed DNA polymerase, family B, exonuclease domain	Interproscan
IPR006134	Domain	DNA-directed DNA polymerase, family B, multifunctional domain	Interproscan
IPR006172	Family	DNA-directed DNA polymerase, family B	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR023211	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050240	Family	DNA polymerase type-B	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10322	DNA POLYMERASE CATALYTIC SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006261	Biological Process	DNA-templated DNA replication	Interproscan
GO:0006287	Biological Process	base-excision repair, gap-filling	Interproscan
GO:0006297	Biological Process	nucleotide-excision repair, DNA gap filling	Interproscan
GO:0008296	Molecular Function	3'-5'-DNA exonuclease activity	Interproscan
GO:0043625	Cellular Component	delta DNA polymerase complex	Interproscan
GO:0045004	Biological Process	DNA replication proofreading	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-