Detailed information of OFRAG00000001801.1 in Osedax frankpressi Gene info
Gene IDAnnotationScaffoldStartEndStrand
OFRAG00000001801.1POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATEDtig00000345291086308335-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00570HRDCHRDC domainDomainInterproscan
PF01612DNA_pol_A_exo13'-5' exonucleaseDomainInterproscan
PF04757Pex2_Pex12Pex2 / Pex12 amino terminal regionFamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001841DomainZinc finger, RING-typeInterproscan
IPR002121DomainHRDC domainInterproscan
IPR002562Domain3'-5' exonuclease domainInterproscan
IPR006845DomainPex, N-terminalInterproscan
IPR010997Homologous_superfamilyHRDC-like superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR044876Homologous_superfamilyHRDC domain superfamilyInterproscan
IPR045092FamilyExosome complex exonuclease Rrp6-likeInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR12124POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000166Molecular Functionnucleotide bindingInterproscan
GO:0000175Molecular Function3'-5'-RNA exonuclease activityInterproscan
GO:0000176Cellular Componentnuclear exosome (RNase complex)Interproscan
GO:0000467Biological Processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003727Molecular Functionsingle-stranded RNA bindingInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0006139Biological Processnucleobase-containing compound metabolic processInterproscan
GO:0008408Molecular Function3'-5' exonuclease activityInterproscan
GO:0044237Biological Processobsolete cellular metabolic processInterproscan
GO:0071035Biological Processnuclear polyadenylation-dependent rRNA catabolic processInterproscan
GO:0071036Biological Processnuclear polyadenylation-dependent snoRNA catabolic processInterproscan
GO:0071037Biological Processnuclear polyadenylation-dependent snRNA catabolic processInterproscan
GO:0071038Biological ProcessTRAMP-dependent tRNA surveillance pathwayInterproscan
GO:0071039Biological Processnuclear polyadenylation-dependent CUT catabolic processInterproscan
GO:0071040Biological Processnuclear polyadenylation-dependent antisense transcript catabolic processInterproscan
GO:0071044Biological Processhistone mRNA catabolic processInterproscan
GO:0071051Biological Processpoly(A)-dependent snoRNA 3'-end processingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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