Gene detail

Detailed information of OFRAG00000000457.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000000457.1	UV-STIMULATED SCAFFOLD PROTEIN A	tig00000243	1109839	1117269	-

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000000457.1

ATGGATAAAATTGTAGGGTATTCTGGAGAAATCATGGATACTTCAAACATACAATACACAGAATTAAAAACTCTTATTGATCAAATATCTCAATCCAAATCAAAAGATGAAGCAAAATATAAACATATTAAAAGTATTTGCAAAAAAAGTGATCGATTTGTTGAAATAACATTTAATTTATTAATGAAAAAACTTCCGAGGAGAAATGACCAGCTTCAAATGTTACCTCTTTTCAATGAATTGTTTGTAAGATCACATTGTTTTAGGGAGTTATTTATTCTACATATAAATGAATTTATTAGTCTTACATTGGAAACTAAGAAACCTCCCGACATCAAAGTAAAGTCCATGATACGAAAATATATCAATGAATGGGATGAAAAGTTTGGATTTAAATATCCGCGATTTGCAGATGCAATTAAATTTATTAGGCAAAATAAAAAGTTAAAATTAGAAGACGTCAGAATAGAAGAAGAATTTGAATTAGTAATACAAAATGTAGCCGCATATAATAAAGAACAAAGGATTAAAAAAATTTCAAAGAAATTTAATGATATTCAAAAAGATATCGAGATTTCTCTCGTGGAGATTGAGAATGCTGTTCAACTTCTCGTACCCTACCACGATTGCTTTCGCCGCACATCAGATTTGACCAAACAAACAAACGGATCCGATGCTGATCTACCCGCAATTGATATTGCAACTCGATTCGAATCCGAATTAATTAGTCGGACCGCAAACGGTAGCGAACTCGAAACGCAAGATTATTCATCCGGGTCACATGTAATGGTCGAGCAAGCTAGCGAATTACAAACTTCCAGCTGCGATGAAAATGGGAAGAAAGTAAATATGAAAAGGGAGGAAGTTTTGAATAAGAAAAATGAGGAGAAACAAGAGATGAAAATAGAGCTGGAAAAAAAAGAAATGCAGGAGCGAAAGAAGGACGATTTCGAAAAAGAAGATAATGACGAACTATACGAATACTCCAAACGTGCTGCGGCCTCTTCACCTTCGAGCCATCGCGAAATAGTAATCACAGTCGAAACTTCAGCTAAAATTAACATCGGCGTTACCCCCGACAACCGCATTATAATAGATGCCTTGTGCGACCGCATACATCTGATTTCCTCGCGTTACCTTTTTCGCGTGAACTCTCTCTACCAGAAAGCCATGAAATTGAATGCGGATGTCACTCTTACCAGCAAACTGCGCAAATGTCGAAAACTAATGATGTCTGTGTTGACCCGCGTGAATCGCGTGACTGTGAATAATCGCTCTTGGCGGAGTCACAGACTCTATAGAGAAAGAGACTCAATGCGTCGTAAGCGCAAGGCTCCTACCGACAACAGCAGCGACGACGAAAAAGATTTCGTCGAAGTTCCGGATGTCGAAATGTTTCCTCTTTTGTTTTCCGAACATCGTGTTCCCGACGCCTTAGTCGCGCCTCGTCTGACGTCGCCGCCTAGTGGAGCCCGTCGTCCTTTGGGGCTAACGACTCCGCCGGCTGGCGAATTGACCGCCGGGTCTGCAAACGGACAAACTCCATCTTCCCCTGAGCGCAGAGACGCGGGCCAGATGACAGTTGAGATAGACTCTCATCGCTACCATTGGACGGGTCTAGTGCGACAGCGAACCGATGACCCCACAACTGGACAACGACCCCTATCCCCTGGAACATTACGGAGACTGAAGGAATTCGAAAAACGAGAATCTGCTACCGACAGAATCTCAATGACTGTATCTCCTAATCCCTCGACTGCAACTACTATATCAGCACCTACTGCGGTAACAGAAAGTAGCGCTCCAGTGGTTCCTTACGGTCCCGACCTCGTGAATTGGGGTCAAGACATCGACAAATCGCAAGTTAATTTGCCCAGGTTCGACATCAGCCATCGTTTCTGGAATCGAGATGACCACGAGATGGCAGCTCCGGAAGTCGAGACTCGTCGGCTAATCGATTTCGCTGGTCATTTTACGCCAATCACGCGGACTTGTCGCGCTCCATTGCAGGGCAAGAAAGAACTCTGCTCCCGCAAGGATAAGTACAAGTGTCCATTTCATGGTACCATCATCGATAGAAATTCTGATGGCATTCCTAAAAACATGACAGAAATTGCCAGCACTTCAAAAATAAATACTCTCGAAAAAAATTATTGGGATGAAAAATTTTATGATCAAGATGGAAAGGAAATTATAAAACCCAACAAGAAAAAGAAAAAAAATAAAACTCCAAGATCCAGATTAAAAAAGAAAATATTTAACAAGCAAACTATGAAAAGAGTTAATGATAAACTTGCAAGTTCAGAAAGAAAGAAATTCCATGATAAATTTGGTAATAGCTTCAATTATTCCTATGATTAA

Transcript

OFRAG00000000457.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09740	DUF2043	Uncharacterized conserved protein (DUF2043)	Family	Interproscan
PF20867	UVSSA_N	UVSSA N-terminal domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018610	Family	UV-stimulated scaffold protein A	Interproscan
IPR049408	Repeat	UV-stimulated scaffold protein A, N-terminal alpha-solenoid repeats	Interproscan
IPR049431	Domain	UV-stimulated scaffold protein A, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28670	UV-STIMULATED SCAFFOLD PROTEIN A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000993	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0006283	Biological Process	transcription-coupled nucleotide-excision repair	Interproscan
GO:0009411	Biological Process	response to UV	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-