Gene detail

Detailed information of OFRAG00000000105.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000000105.1	EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN	tig00000168	1474462	1482561	-

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000000105.1

ATGAATTCTCAGTGCGAATTATCGGAATCATCAAACCTAGATGACCAGTGCGATGACTCCAAACATGCTGACGAAGTGTTGACCGAGCAATGCCTGGACAGCGACGGTAACCTGATTTTCTTGGACGATAGCGATGAGAAACTCAACTACGGCAACGACAGCGTCGAGTCAGTTGTGATTGACGTCGACGGCGACAATGACGTAGAGAATGATTTAAACGAAGACGAAATCTGCGCAAAGCAGCAGAGCGACAAATTAGCGGCGAACAATGTTGCCCCTCAATATAGATTTTCTAACAAAGAAGAAAAGAACCCAACTCAATTATTATACGAATTGTACCCAAATACCACATTTCACTTTTATTCAAACTACACCGACGGTCAAAAGGAATTCACATTCACCTCAACTTTTAACAACGTAACTTACAAGGGTGTGGCAAGTAACAAGAAAGCTGCAAAAAGTCTCTGTTGCTTCAACATGTTATCGGTGATGAGCGAAGAGGAGATGCTCGGTTTCAAGATGAGGAAAAAGCGAGACCGAGAGTACGATCTCAGGCATACCATCAACTCGAAGATCTCTAAACCCAAACCCGTGGCGAAGCAGATCGACATCATGAACTCAGTTGTCGTTCAAGGCACTCTAGAATACTTACAAAAGCACGGAGTACGCTACAACTTCAAGTACACGAAATCCGAGATCGACAGTCGAACGATGATCGACGCTCGCATGGAATACTTCTTTAAAGGTCGTAAAGGGGTGGTGAACTCGCGATCGGGTTCGAAGAACTGCTCTCGCAAGATCGCCATGCACAAACTCTACAGACAGCTAGCCGGACCCTCGGAGGATGGTAATTGCGAAGAGCTCCCGCCAATGGCACTCTCCGATGAGATGGAGGTCAATAGTTCATTCCCGGATAACATGGCTACCATGGTACACAATAAGTTCAATAGTTTGTACAAGGTGGAAACCGACGACTCCCCTATCAAGTTAAATAATCAGGTTATCTCTGCTATAATAGTGGAGCATGACGGGCAGTACATAGTGGGTTCCCTAGCCACTGGTACCAAGTGCATCGATGGAGCTCAGTTAAACTTTAATGGCGACAGAGTGACTGACAGCCATGCAGAAGTATTGGCATGTCGAGCATTCAAGAGTCTGATATACGATGACCTTGATACTTATTTTAAAAATGGCTCCGAGTCGTCGATGTTTGAAAGCAACGACGGACAACGCCTCCGCCTCAAGCCGAAAGTGAAGTTGCACTTGTACGTGAGTTCCGCCCCGTGCGGAGACTCTCGGCTCTTCGCGACGCAACTGAACGGTTCGCCAAGCGCCGACCTTAAGGATCTCGACGCTTCTCCGACCGGCGGCGTTAACGCCGACGACGGACACGCGCAGAGACACTCCCGTGGGAAGTTGAGAACAAAGATTGAGGGTGGAGAGGGAACCGTGCCAGTGGAGAGCTTTTATTACACCGAAGGCTCCGTACAGACTTTGGATGGCATTCTCGGAGGTCAAAGGTTGCGCACGATGTCTTGCAGCGATAAAATTGCAAAGTGGATGTTTGTAGGAATTCAAGGATCTCTACTATCGATGATCATCGATCCAATCTACCTGTCCTCGGTGATAGTCTCCAAATTCTTTAATGATTCTCACCTGAAACGTTCGCTGTACTACCGTCTACACGAGGGCGGGGCTCGAGTGCTCCGAGGACCCACTTCCGGCGGCGGTCGAGGCTACCGGCGTTCCGCGTACCGGCACACGTGCCCGGACGTGTTCCAGGCTCGTCCGATCACGCCGCGTCGCCTGATATCGCGTAACACCGCCCACTGCGCCTACTGGAACGCCAGCGCCAGCCCCGGAGCCGCTGTTCCAGACCTGCAACGTCTGCACGGCGTCACGGGCCTCGCGCCCTCCGGGGAACCGTCTTCGCTGTGCAAACGCGGCCTGATGTCTCGTTTCGCTCGGGTGTCCGCTTCGCTCCGCGACTCTCCGTCCGCGGTGAACACGGGGGACCTGTCTGCCGCCGGCGACCTCTTGAACTCCGACGGACCCACCTGTTACCGCGAACTCAAGGACTGCGCCCGCGAGTACTCTATCGCTCGGCAAGACCTGCACCAGGCTATCGAGTACTCCGGTATCGGCAAATGGCTCAAGAAGCCCACCGAGGTGGATATGTTCTGCCTAGATTTACATCAGTAG

Transcript

OFRAG00000000105.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00035	dsrm	Double-stranded RNA binding motif	Domain	Interproscan
PF02137	A_deamin	Adenosine-deaminase (editase) domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002466	Domain	Adenosine deaminase/editase	Interproscan
IPR014720	Domain	Double-stranded RNA-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10910	EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003725	Molecular Function	double-stranded RNA binding	Interproscan
GO:0003726	Molecular Function	double-stranded RNA adenosine deaminase activity	Interproscan
GO:0004000	Molecular Function	adenosine deaminase activity	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006382	Biological Process	adenosine to inosine editing	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0008251	Molecular Function	tRNA-specific adenosine deaminase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-