Gene detail

Detailed information of OALVG00000011109.1 in Oasisia alvinae Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OALVG00000011109.1	INTERFERON REGULATORY FACTOR	tig00001031	63893	87336	+

Gene Structure

More details in Jbrowse Sequence

CDS

OALVG00000011109.1

ATGTCGCCAACAGCCGTGTTGGAAAGCACTGAGTGGCCGTCATTCGTGTGCAGCTCGCTGGCAGTGCTGCGCCAAGAGGGAGTGTTGTGCGATACGACTCTGCTGGGCAAGAATGGCCGCACCTTGCTGGCCCACTCCTGCATCCTGGCAGCAGCCAGTCCCGTTCTACGCACAATTGTCACCCAACAGAACCTTGTCAGCTTCCTACACAAATCAGACTTCATCTCGAGGGGAGTGTGGGATGTCATACTTGAGTTCATCTACCGAGGCAAGGTGACCATCGACACTGTTACTGACGCCCGAGACATCATGGTGGCGGCAGAGAAATTGGAACTGGAGAAGTTGCGGTCGCTCTGTGAAGACTTCCTGCAAATAGAAGGTGCTATTCTGAAGGATAGCAGTGATCCTATTGTGCTAGATGAGGACACACACCCAGCTGTACCTGTGATCAAGTCTGAGCCGGGGCTCTCTCCATCCTGTTGCCGGGCACAGAATGTGCACATAGAAATAGATGCTGCCAGATATGCCAGTGGTATAGCGCCTGGCATGGTTCCGTCGAGTAACCCTGAAGTAAGCACTTCAGTTCGCATTAAGACAGAGCCTATAGACGACACCTTTGATAAGCAGTCAGCCAGGGACACTGTGTTGATGTCAGGTGGGCAGGGACAGGTGATATCAGGCTCTCAGCACCAGAAGGACTTGGGCCGGGCCATCACCAACCAGCCTATGCAAACAGACGCAGCGGGTTACACTTTCACCACGCACGCTTCTCCGCTGGTCAGTTCAAGTATGCCGGTCAGCCAGCCAATGGGTAATATGCGTGAATGGTCAAATGCTCCCATAGCAACCAATCTGAGTGGACGGGTACCGGTGACCATACCATTGACCATACCGTTGACCCATAAGTTGCCTGTTATCCTGCCTGATACAGCTGAGGCCACGACAGAAAATATCACTCAGAGACTGCCCTTGACCAGAGCACTTTTGTCCACTAGCGAACCACTGGCCACTTCCAACAGTGCCCCACAGTTGTCGCACACCCTTGTGGACAACGCACTGACACACAGCAATGGACATGACGATTTGCCAGCATTGGTGACAGGGAATCACCCCAATGCCACAAACTCTGCAGTGACCACTGGATGTAGTTTGGACATGAGTCATCAGAACACCACCTACATGGCTGCTTCAAGTATGCCAGTCAGTTCAACCGTAGAGGATGAAGGGCCACTCTGTCTGGTGATGCCCAAGAAGAGGTCTGTGGCCAAGACACGCCGCAAGCGACGTCCAGTGGCATTCCGACCAGAAGCTCCTCCAATGTCCAGTGTCGCAGACACTCCGTCCTTCCATACACCCTCCTACATGAGTGTGGAGCACCCCACACCAACCACCGGGGCGTACCCCAACTCAATGAGCAATTCAATCAACCAACAGTCCGATGGTCAGCCACTTCCAGTTGGCAGTCATAAACACCCTCCGCCAGGCACTGACCTCTGTCCAGCCATCACCCCGTATGGAATGTGGGGAAACTCTGAGTTGAGGCGACGTTTAGCATCAAGGCAGCGTGCAGAACTTGGCACAGTGACTGGTCTCGGGGTGGCTGAAGTCTCCCTTGACCTTGACCCCATCACGGGGGACATGTCACCCAGTAGCATTGCCCAGGCGGAGGTGCCTGCTGCTGCCGTGCCCCACCAGGTGGCAGCACCATGTGACAAAGCGAGTGAGAACATGTTGGAAGGTAGATCAGTGGAGGATCAGCAGGCCAAGGAGCGGATCGCTGTTGAGGTCATCTCTCAGCTCTCAGTTGCAGGAGCCTACAATGAGTTGGGGCGTGGGAGGAGGAAGAAGACCACCGCCTTGAAGCGTCGTCACCCTAACCACAACGGGTTCTTCCCGACACCGAGGGGTCCTAAGCTGACGATCAAGTTGAAGACCCCAAAACGCCAGTCGTCCTGCAGTCTGTCCCCGGAGGACCTGGGCCAGCAGATCCCGGAGTCCGTGCTGGGGCAGAACGACACCAATCTACAGCGCTGTAATGTTGTCTTGTACGACACAACGGCCGTGGAGTCTGGAGCCACCATCAACTCAATGACACCCAATGACTCCACCTGTCTCCCAACGACAGTGCTTGACGCGAGCCAGCTCACGGTGCGCAGTGTCATGAAGCTGTTCTCTCCTCGCATGTCAGAGGAGCGTCAGTTGATGAGGCCCTGGCTCGAGATGCAGCTCAGTGCAAACACCATTCCAGGTCTGCACTGGATGAATGAGGAGCAGACTCTCGCTCGCATTCCCTGGCTGCACGCCTCCCGCACCAGCTACCAGATGGACACAGACTCGTGCTTATTCATGATGTGGGCAGAACACACAGGCAAATATGTGCGTGGCCGGGATGAGCCTGACCCCAAGAGGTGGAAGGCCAACTTTCGGTGCGCCCTCAACTCCCTGGCCGACGTGCTGGAGGTGAAGGACAGCAGTCAGAAGAGGGGCCGGGAAGCCTTCAAAGTCTACAAGTTCCTGCCTCAGGCCAAGAAGTCACGCAAACACAGCACGCCTCAAGCCAACAGTGGCCGCAAGAAGAAGGAGGATGCCAGCAGCAGTGGTGGGGAGACAGACGGGGTGAAGACTGTGCGGCGTAGACTTGTTTCCCCAGGGCCATCTGACAACCCCTGCAAGGGGCTGACGGGCCGTGAGATCATGAGTGTGATGAAGCGGAAGGGTGGTGTCATTGACATAGACATGTCGATGGAGGACACTGTCAGTGCGGTGGCTCCTGCAGCAGCGTCCATGGTCCAGAGTCACCACAACTCTGATGTGACGCTGAAGCCTGACAGCACCTCCTCCATGGCTCCTTCTCCAGATGTCGACACAGGCTCCAGGGAGGTCGGGGATTTGCCTGTGTCTGTGTCCGCCAGTGAACCCATTCCCAGCAGTCACAACCCCAGCAGTCACAACCCTGGTGGTCACAACCCTGGTGGTCACAACCCTGGTGGTCATAATCCTGGCAGTGAGACTGCAGCAGCCGACACGTCGACACATTGCATCGTTGACGCAGACACTCCTAAGACACTGACAGCCATGGCACCAAGGAGTGCCACAGACCAGCCCCTCCACACACCTGCACTGCCAGCAGCAGGACTGACCCTGGCACAGACAGGCTTCACCTGCAAGGACTGCTCCCAGTGGTTCACACACAGCACTATGTTGGCGCGCCACCAGCTCTCACACACCACCTCCACCTCCTTGAAGACACACAGGGACACAGCAGGGCTCAGCTGTATGGGCGGCACCAACCAGGCAGTGGAGCAGAAGCCAATGGAGACATAG

Transcript

OALVG00000011109.1

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	IRF
Transcription Factors Family	ZBTB

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00605	IRF	Interferon regulatory factor transcription factor	Domain	Interproscan
PF00651	BTB	BTB/POZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000210	Domain	BTB/POZ domain	Interproscan
IPR001346	Domain	Interferon regulatory factor, DNA-binding domain	Interproscan
IPR011333	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11949	INTERFERON REGULATORY FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0002376	Biological Process	immune system process	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-