Gene detail

Detailed information of OALVG00000003677.1 in Oasisia alvinae Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OALVG00000003677.1	POLY ADP-RIBOSE GLYCOHYDROLASE	tig00000320	1286174	1305761	+

Gene Structure

More details in Jbrowse Sequence

CDS

OALVG00000003677.1

ATGGAAGTAGAGTTGACGTGTATCATATGTCAAGAAATATACAGAGAACCGGTGGTGTTACCATGCGGCCACAGTTTTTGTGAAGTTTGCCTTGATAAGATCATCACATCGTCTTCAGAGAGATGGACTGAGGCAAGATGTCCATTGGGGTGTGGACCAATAACCAAGCCATTTCAAAAGAACTTCACACTGCAAAATGTCGTCAGTCAGTATCACCAGCAAAACCTGCAGAAGTCAAGCCGAAAGAGAGCGGACACAGTGGGGCAGCAATTCTGCAGTGAACACTATGGAAGCATTGCAGATTTGTTCTGCACGGAGTGTAACATGGCTATCTGTCCACTCTGTGTCTGCCAGGGTAGCGGTCAGCATGTTGGACACGTGGCCACTACCATGGACGAATGGTGTAGCCGGTTGAAGACGGAAGGAGTAAAAGTGGAACAACGGGGAAAGGAATTGGTGAAAACTGTGGAAGAAATCATTGCTGAGGTGAAGGAATATGACGAAGCTGCTAAGACACTCTACAGAGATTACAGCAAAAAGGTCGAGAATGACTATGAGAGAGCAAAGACCGTGCTAGACCAATGGCATAAGGATGCTCTCGAAATGATGAAGCGTGAGGCAACGAACTTGCCTTTTCCAGAGGAGATGCAAGAGCATAAGGGAGCTATAGAAGAACTGTGTCACTCGGCTGAATCATTGGAGTTTCCGCCCTCAAATGAAGGAATTGCAGAAGGCGTAGAACAAATGGAAGAACTCAAGGCGAGACTGGACAGTTTCAAAACACAGGTGGACGAGATGAAGACACAGAACGACCTGGCTAAAGAGTCTGTAGAAGGCCTGGAAGACATTCTCAAGACACAACTTCTCTCGTTCAACAAAGAAGCTGATTACTGTGTAGAAGCAGTCCAACAAATTATGGGGTCTGGAGCAATGAGCACCACTGCCGTGGGACAGCCGCTGATTTCTCTGGGGGTACCAAAGCAAGTCTTCAGAACCTCGTCGCCTGACACTCAACCCGTTGCGCCACTGAATGCTGCCGGGCACACTGTGCTGTCACCATCAGTCGAACATGCGCCTGGTGCAAGCACAGATAAGCACTCAGATACATCGGATGAAGATCCTCATCTTTGGCACCCAGACTTTGTCAAGATGCCATTCTCCAAGAAGATCAAATATTCAGTGACAGTTCCTGGAATGATGCACCTATTTCGCAAGACGGAAGCAAGGTCAAAGTGGAATGTGATTTGCGAGGCCTTGAGTAAACCGATACGCAACGTTGATGACTTGCAGAAAGCCATATCGAGCTACAATAAGAACGTCAAGGATGGATCTGCTCTTCAGAAAGTCTGCAATGACATGGACACCAGCAAGAAGAAAGAATTCTTTGGCACTATTCTCCCGGATATGATTCAGTTGGCACTCTCCCTTCCTGTGTTATGCCCGAAGCCAATTCCTCTCTTGAAGAACGGCGTTACCCACAGCATCACTATGTCACAGCATCAGGCTGCGTGTCTGCTCGCAAACGCTTTCTTCTGTACGTTTGAAGAAGGCCCCGACCAGGCCATTGACTACGGAATCAACTTCACGAGATTGTACCAAGGAAAGCTTTCCCCAATTACAATCGAGAAGCTGAAGTGTCTTCTCCAGTACTTCAGGAGTGTCACGGAAGACATGCCACATGGCAAGCTCACCTACAGTCGAGGGGTACTGAAGGAGGACAAGATTCCTGACTGGGGAAACCTGGACAACAATTTCACACGACTACACATCTCTTCACGTGGAACCATAGAAGACGACGGTGCCGGCATGCTGCAGGTTACTTTTACCAACAAGAACCTTGGTGACGGAGTGTTCTCACCACACTTCTGTGGCCAGCAAGCAATCCGGTCTCTCATGTACCCAGAGTTCATTGTATCGCTGCTCTTCACAGAGTGTCTACAGTCGAACGAGGCGATCATGGTGACAGGCTGTCAACGCTTCAATCGCTGCAAGGGCTACGGGAAGGCGTTCGAGTGGGCAGGTCATTACGATGACGTCACCCAAAGAGACAGCTCAGATCGTCTGTGCTCCCATGTTGTGGCAATCGATGCACTTCCGCTAATGAACAACAATCAGAAGAAGCAGTGTGATGAGTCGAACCTACGGCGAGAACTTAACAAGGCCTACGTAGGGTTCCACGGTCTACCTGACAAACGGGTTGCCATTGCCACGGGAAACTGGGGGTGTGGAAATTTCGGTGGAGATCCCAGATTGAAAGCTCTCATCCAGCTGATGGCTGCTGCTGTGGTTGGACGTGACGTGTGCTACTTCACGTACGCGGACGACGCTCTCACCCGTGACATCTACGACATCCACAAGTTGGTGACACAGCGCCACCTGACTGTTGGGAATGTATGGTCACTCATCCGTGACTACAGTCGCGCCAGCGACGCAGGGTGCAAGGGTCTGTATGACTTCATCACGCGACAGACGACACCAGCGTGA

Transcript

OALVG00000003677.1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF05028	PARG_cat_C	Poly (ADP-ribose) glycohydrolase (PARG), Macro domain fold	Domain	Interproscan
PF20811	PARG_cat_N	Poly (ADP-ribose) glycohydrolase (PARG), helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR007724	Family	Poly(ADP-ribose) glycohydrolase	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR046372	Domain	Poly (ADP-ribose) glycohydrolase (PARG), catalytic domain	Interproscan
IPR048362	Domain	Poly (ADP-ribose) glycohydrolase, helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12837	POLY ADP-RIBOSE GLYCOHYDROLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004649	Molecular Function	poly(ADP-ribose) glycohydrolase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006282	Biological Process	regulation of DNA repair	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0009225	Biological Process	nucleotide-sugar metabolic process	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:1990966	Biological Process	ATP generation from poly-ADP-D-ribose	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-