Gene detail

Detailed information of OALVG00000001944.1 in Oasisia alvinae Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OALVG00000001944.1	EH DOMAIN	tig00000161	4962507	4994258	+

Gene Structure

More details in Jbrowse Sequence

CDS

OALVG00000001944.1

ATGGCGGTTACCCCGTCGATGGCCCAGATTACAGGGGCTCATTTATCAACATATGAGGCCCTTTATAAACAGGTCGACACAAAAGGAACAGGAATTATCAGTGCACTCGATGCCGCGACGTTTCTCAAGAAGTCTGGCTTGAGTGTCGGAGTTCTCTCACAGGTATGGGAGTTGGCCGACAGTGCTGGAAGAGGTGCCCTTGACAGACAAGGGCTCTTTGTGGCCCTCAAACTCATCGCACTCGCCCAGAATGGCAAAGAGATGAGTCTTGCCAACCTTGCCCTACAGGTGCCTCCACCGTCTATGGGAACACCAGCCAGTCCCGCCATCGCTCCCTTGGGATCGGAGGGTGACAACTGGGCCATACATGCGACAGAACGGGCAAAGTACGACCATATATTTGAGGGCCTGCAACCCATCAATGGCATGCTGACTGGGGATAAAGTGAGGCCAGTGCTTCTGAACTCTGGTCTAGCTGTTGATGTCCTCGGTCGAGTTTGGGAGCTCAGCGACATCGATGAAGATGGCTTCCTTGATCGCGACGAGTTTGCAGTGGCCATGCATCTAGTCTACAAGGCCCTAGAGAAACAACCAGTGCCAATGAAGCTGCCTCCCAATGTGATCCCGCCTTCGAAGCGGAAGAAGAGCGGCGTCATCCCGGGAGCAATTCGGGTTCTTCCTCCCGTTGGGGTGATCGCCTCCCCTCCTCCCTCCGCCGGTCTCTCCATCAGCAGTCCCCCTCCCATGGGAATCGGGAGAGGGAGTCCGACAGCCGCGACAGGGAGTATGGCACCCCCAGTAGGTGGCGCCTCTGCAGTGGGGTGGGTCGTGACCCCGGCGGAGAGGGCGAAGTGTGAGGAGATGTTTATAAAGATCGACACGGACATGGACGGCCTTGTGAACGGCGTGGAGCTGAGGGAAATCTTCCTTCAGAGCGGCCTCGGTCAGCCCGTTCTCGCACACATATGGAACCTCTGTGACATAAGAGGAGTTGGCCAGCTCAATCTTGACCAGTTCTGTCTCGCCATGTACCTCGTACAACAGAAGCTGGCGGGGGTGGACCCCCCACAGACCCTGCCCCCCAACATGGTGCCCCCTAGCTTGCGCGGGTCTGGCATGGATGGCGCGGTGGCGTGCAGTGATACAAAGGAACTGGAGATGATCAGCAAGGAGATTGACGACCTCAAAATGAAGAAGATGACCCTAGAGCAGGAGAAAGCTCAGAAGGAGGCTGACATAAAGATTAGCAACTCGGAGGTTCTCGCACTGCAGAAGGAGTTTGATGCAATAAGCTGCACCGTGAAACAACTGGAGACACAAAAGTGTGAAGCACAGAAACGACTTGACGAATTGGATGATAAGAGAACAAAGCTGGAGAATCTGCTTCTGGAACTGAAAGACAAATGCCAGGAAGAACAAGACACGATCACAAACCTGAAGTCTCGTATTTCTAATCAAGAAACCGATGAAAAGACGCAGGAGGAGACACTAAAGAGGACACGAGATGAGCTGAACGACCTTCGCGAGCAGGAAGCTGCTCTGGAGGAGAAGCGAGAGTCGCAACAACTGCAGCTGAACCAGCTCTCAAAGAACCTGGAAACGGTGATGCAAGAAGTGACCCAGACGAAAGCAAACATTCGCAACCTACAAGAGAACCAGAGTAACACTGGTCTGGTCAATGGAAACACAACTGGTGGATCGAGAACATTGACCCCTAGCGACCCAGAACAGTTCAGCACAAAAGCTACAGCTGGCAGTAGTCCAATCAGCAACACCAGTGGCTTCAGCTCGGTGTCTGGTCTTGATGAAGACCCATTCAAGTCAAAGGACCCGTTCACTAACATCAATGGAGACACTTCCGCAGCCCCGGCGGATCCATTTGCTGGAGAGGACCCGTTTAAAAACGTTGTACCCGAGGACCCATTCAAAGGAAGTGACCCATTCCATGGAGAGACGTTTGCGGCGGAGTTTGATCCGTTTGGTGCTGATCCGTTCAAAGACTCATTCCCAGACAAAGGTCCAGCATCAGAGCTGAAGCCCTTGTCATCATCTAACACATCATCGCCCAAAACTGTCACACGCGATTCATCGTCTAAACCTTTCACCGGTGATCCATTTGGAAAAGATCCATTTACTGCTGCATTCTCTTCCATGAAGCCAACAACAGCAACAAATGATCCATTCGCTTCGTCTGTGGTAACAGCAGATGCAAAGTCACCAGCTGATTTTGCTTTGGGCGATCCATTTGGCACCGACCCGTTTGCGCCAACGTCATCGGCGAAACCGAAACAGGCGAAGAGTCCTGCGCCTCCCCGACCTAAGAGCAAGTCACCCGCCATTGGACGCAACAGGTCTCCTGCGCCCTCTCTCCCACCAAAACACAAGAAGGCACCCCCACCCCCTCGACCCCCAGCCCCTAAACCTAGCCCAGGAAGTGGGAAACCGGCACTAGATCCTTTTGAGGGAAACGATCCCTTTGGGGGCAACGCGGCAACCACAAAAGGGAGCAGTGGAGATCCTTTCGGGGGCAACTTCGCTGATTTCGGTTCAAGCAAGGTCGGAGGCGCTCCAGAGACAGACGAGATAGCGTGGGCAACGATGAAGAGCCAGGAAGAGTACAAGAGGCAGAAACAACTGGAAGAGCAGGAGCAGGCAGACCTGGAGCTCGCCATTGCTCTCAGCAAAGCCGACATGACATAA

Transcript

OALVG00000001944.1

AGAAATATGGCGGTTACCCCGTCGATGGCCCAGATTACAGGGGCTCATTTATCAACATATGAGGCCCTTTATAAACAGGTCGACACAAAAGGAACAGGAATTATCAGTGCACTCGATGCCGCGACGTTTCTCAAGAAGTCTGGCTTGAGTGTCGGAGTTCTCTCACAGGTATGGGAGTTGGCCGACAGTGCTGGAAGAGGTGCCCTTGACAGACAAGGGCTCTTTGTGGCCCTCAAACTCATCGCACTCGCCCAGAATGGCAAAGAGATGAGTCTTGCCAACCTTGCCCTACAGGTGCCTCCACCGTCTATGGGAACACCAGCCAGTCCCGCCATCGCTCCCTTGGGATCGGAGGGTGACAACTGGGCCATACATGCGACAGAACGGGCAAAGTACGACCATATATTTGAGGGCCTGCAACCCATCAATGGCATGCTGACTGGGGATAAAGTGAGGCCAGTGCTTCTGAACTCTGGTCTAGCTGTTGATGTCCTCGGTCGAGTTTGGGAGCTCAGCGACATCGATGAAGATGGCTTCCTTGATCGCGACGAGTTTGCAGTGGCCATGCATCTAGTCTACAAGGCCCTAGAGAAACAACCAGTGCCAATGAAGCTGCCTCCCAATGTGATCCCGCCTTCGAAGCGGAAGAAGAGCGGCGTCATCCCGGGAGCAATTCGGGTTCTTCCTCCCGTTGGGGTGATCGCCTCCCCTCCTCCCTCCGCCGGTCTCTCCATCAGCAGTCCCCCTCCCATGGGAATCGGGAGAGGGAGTCCGACAGCCGCGACAGGGAGTATGGCACCCCCAGTAGGTGGCGCCTCTGCAGTGGGGTGGGTCGTGACCCCGGCGGAGAGGGCGAAGTGTGAGGAGATGTTTATAAAGATCGACACGGACATGGACGGCCTTGTGAACGGCGTGGAGCTGAGGGAAATCTTCCTTCAGAGCGGCCTCGGTCAGCCCGTTCTCGCACACATATGGAACCTCTGTGACATAAGAGGAGTTGGCCAGCTCAATCTTGACCAGTTCTGTCTCGCCATGTACCTCGTACAACAGAAGCTGGCGGGGGTGGACCCCCCACAGACCCTGCCCCCCAACATGGTGCCCCCTAGCTTGCGCGGGTCTGGCATGGATGGCGCGGTGGCGTGCAGTGATACAAAGGAACTGGAGATGATCAGCAAGGAGATTGACGACCTCAAAATGAAGAAGATGACCCTAGAGCAGGAGAAAGCTCAGAAGGAGGCTGACATAAAGATTAGCAACTCGGAGGTTCTCGCACTGCAGAAGGAGTTTGATGCAATAAGCTGCACCGTGAAACAACTGGAGACACAAAAGTGTGAAGCACAGAAACGACTTGACGAATTGGATGATAAGAGAACAAAGCTGGAGAATCTGCTTCTGGAACTGAAAGACAAATGCCAGGAAGAACAAGACACGATCACAAACCTGAAGTCTCGTATTTCTAATCAAGAAACCGATGAAAAGACGCAGGAGGAGACACTAAAGAGGACACGAGATGAGCTGAACGACCTTCGCGAGCAGGAAGCTGCTCTGGAGGAGAAGCGAGAGTCGCAACAACTGCAGCTGAACCAGCTCTCAAAGAACCTGGAAACGGTGATGCAAGAAGTGACCCAGACGAAAGCAAACATTCGCAACCTACAAGAGAACCAGAGTAACACTGGTCTGGTCAATGGAAACACAACTGGTGGATCGAGAACATTGACCCCTAGCGACCCAGAACAGTTCAGCACAAAAGCTACAGCTGGCAGTAGTCCAATCAGCAACACCAGTGGCTTCAGCTCGGTGTCTGGTCTTGATGAAGACCCATTCAAGTCAAAGGACCCGTTCACTAACATCAATGGAGACACTTCCGCAGCCCCGGCGGATCCATTTGCTGGAGAGGACCCGTTTAAAAACGTTGTACCCGAGGACCCATTCAAAGGAAGTGACCCATTCCATGGAGAGACGTTTGCGGCGGAGTTTGATCCGTTTGGTGCTGATCCGTTCAAAGACTCATTCCCAGACAAAGGTCCAGCATCAGAGCTGAAGCCCTTGTCATCATCTAACACATCATCGCCCAAAACTGTCACACGCGATTCATCGTCTAAACCTTTCACCGGTGATCCATTTGGAAAAGATCCATTTACTGCTGCATTCTCTTCCATGAAGCCAACAACAGCAACAAATGATCCATTCGCTTCGTCTGTGGTAACAGCAGATGCAAAGTCACCAGCTGATTTTGCTTTGGGCGATCCATTTGGCACCGACCCGTTTGCGCCAACGTCATCGGCGAAACCGAAACAGGCGAAGAGTCCTGCGCCTCCCCGACCTAAGAGCAAGTCACCCGCCATTGGACGCAACAGGTCTCCTGCGCCCTCTCTCCCACCAAAACACAAGAAGGCACCCCCACCCCCTCGACCCCCAGCCCCTAAACCTAGCCCAGGAAGTGGGAAACCGGCACTAGATCCTTTTGAGGGAAACGATCCCTTTGGGGGCAACGCGGCAACCACAAAAGGGAGCAGTGGAGATCCTTTCGGGGGCAACTTCGCTGATTTCGGTTCAAGCAAGGTCGGAGGCGCTCCAGAGACAGACGAGATAGCGTGGGCAACGATGAAGAGCCAGGAAGAGTACAAGAGGCAGAAACAACTGGAAGAGCAGGAGCAGGCAGACCTGGAGCTCGCCATTGCTCTCAGCAAAGCCGACATGACATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12763	EF-hand_4	Cytoskeletal-regulatory complex EF hand	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000261	Domain	EH domain	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR003903	Conserved_site	Ubiquitin interacting motif	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11216	EH DOMAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006897	Biological Process	endocytosis	Interproscan
GO:0016197	Biological Process	endosomal transport	Interproscan
GO:0030132	Cellular Component	clathrin coat of coated pit	Interproscan
GO:0045296	Molecular Function	cadherin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-