Gene detail

Detailed information of OALVG00000001419.2 in Oasisia alvinae Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OALVG00000001419.2	PROTEIN TRANSPORT PROTEIN SEC23	tig00000160	1013367	1025947	-

Gene Structure

More details in Jbrowse Sequence

CDS

OALVG00000001419.2

ATGAAGAATCGTGATCCGCTAGACGGCGTTAATGCATCAAATTGTATTGTGGTTAAACTAATTTATACGGCCATCACCATGGCAACCTACCAGGAATTCATCCAACAGAATGAGGATCGAGATGGAGTTCGTTTCAGTTGGAATGTGTGGCCATCCAGTAGACTTGAGGCTACTAGGATGGTTGTTCCCCTAGCATGTCTGTATACTCCACTGAAAGAGAGGCTGGACCTGCCACCCATACAGTACGACCCCGTCTTGTGCACCCGCTCCAACTGCCATGCAGTTCTCAATCCTTTCTGTCAAGTGGACTACCGAGCCAAGATTTGGTCATGCAACTTTTGCTTCCATAGGAACCAGTTCCCTCCTCAGTATGCTGCTATATCTGAGCAGCACCAGCCAGCTGAATTGATCCCACAGTTCTCAACCATAGAATACACACTGACCAAAGCTGTGTGTCACCCCCCTGTCTTCCTCATCCTGTTGGACACCTGTATGGATGAGGAGGAGTTGCAGGCAGTCAAGGAATCCCTCCAGATGTCTCTCAGTCTGCTGCCGCCGAACGCTCTCGTTGGTCTCATTACGTTTGGCAAGATGGTGCAGGTGCATGAGCTGGGCTGTGAGGGCTGCTCCAAGAGCTACGTGTTCCGAGGAACCAAGGACCTCACCGCCAAACAGATCCAGGACATGTTGGGGATAGGACGTGGAGCAGCAATGCCACAGCAACCACGGGGTCAGGCACCCCACCCTTCTCAGCAGCAGCAGCTGCCAGCCAACAGGTTTCTGCAGCCTCTACACAAGTGTGACATGGCCCTGACAGACCTGCTGGGGGAGCTACAGAGAGACCCGTGGCCAGTGGCTCAAGGCAAGCGGCCACTACGCTGCACTGGCGTTGCACTGTCTGTCGCCATTGGACTGCTCGAGTGCACCTACCCTAACACAGGGGCGCGACTGCTCATGTTTGTGGGTGGCCCATGCACACAGGGTCCAGGCATGGTTGTGGACGATGAACTCAAACACCCCATCCGGTCTCACCACGACATCGAGAAAGACAACTGCAAGTACATGAAGAAGTCAATGAAGCACTATGAGAGTAAGGCCAACAGATCAGCCAACAATGGTCACATCATTGACATCTACTCATGTGCTCTGGACCAGACGGGGCTCCATGAGATGAAGTACCTGTGCAACCTGACGGGTGGTCACATGGTAATGGGTGACTCTTTCAACACATCACTCTTCAAGCAGACCTTCCAAAGAGTCTTCTCTAAGGATGCGAAGGGAGAGTTTAAGATGGCCTTCTCCTCTACAGTTGAAGTGAAGACATCGAGAGAGTTGAAGGTTCAGGGGTGTATTGGGTCGTGTGTGTCCAACAACCTGCGGGGCGCCAGCGTGTCGGACACAGAGCTGGGCCTGGGGGGGACGAGTCAGTGGAAGATGTGTGGCCTCTACCCCAACACTACCTACGCATTCTACTTCGAAGTCGTCAACCAGCACACGGCCCCCATCCCCCAGGGAGGACGCGGCTATGTGCAGTTCATCAGTCAGTACCAACACTCCAGTGGACAGAGACGCATCAGGGTGACCACCCTCGCCAGGAATTGGGTGGACGCGTCCATCAACATGCAGCACATCGCGGCCGGCTATGACCAGGAGGCCTCGGCTGTCCTCATGGCTCGCATCGCGGTCTTCAGGGCCGAGACTGACGATGGACCAGACGTCCTGCGCTGGCTCGACAGGATGCTCATACGGCTGTGTCAAAAGTTTGGTGACTATTCGAAAGACAGTCCGACGTCATTCCGCTTCCCCGAGCAGTTCACACTGTACCCACAGTTCATGTTCCACTTGCGTCGCTCCCAGTTCCTGCAAGTCTTCAACAACAGTCCCGATGAGACGTCTTACTACAGACACATGCTCTTAGTCGAGGACCTCACCCAATGTCTCATCATGATCCAACCAATCCTCTACGCCTACTCATTCAATGGCCCGCCAGAGCCGGTGCTCCTGGACACAAGCAGCATCCAGGCCGACCGCATCCTGCTCATGGACACCTTCTTCCAGATCCTCATCTACCTGGGCGAGACCATCTCCCAGTGGCGCAAGGCCAAGTACCACGAGCTGCCTGAGTATGAGAACTTCAAGCAGCTGCTGCAGGCCCCTGTGGATGACGCCCAGGAGATCCTCCAGACCCGCTTCCCCATGCCCCGTTACATCGATACGGAGGCTGGCGGCTCACAGGCTCGCTTCCTCCTCTCCAAGGTCAACCCATCACAGACCCACAACAACATGTACAACTGGGGCGGGTTGTTTGACAGCGCCAAAAGTGCCGACTCCGGGGACGCAGGGGGCCACGTGCTCACAGATGACGTCAGTCTGCAAGTGTTTATGGAACACCTCAAGAAGCTTGCCGTCTCAACTTCATCTTAA

Transcript

OALVG00000001419.2

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00626	Gelsolin	Gelsolin repeat	Domain	Interproscan
PF04810	zf-Sec23_Sec24	Sec23/Sec24 zinc finger	Domain	Interproscan
PF04811	Sec23_trunk	Sec23/Sec24 trunk domain	Domain	Interproscan
PF04815	Sec23_helical	Sec23/Sec24 helical domain	Domain	Interproscan
PF08033	Sec23_BS	Sec23/Sec24 beta-sandwich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006895	Domain	Zinc finger, Sec23/Sec24-type	Interproscan
IPR006896	Domain	Sec23/Sec24, trunk domain	Interproscan
IPR006900	Domain	Sec23/Sec24, helical domain	Interproscan
IPR007123	Domain	Gelsolin-like domain	Interproscan
IPR012990	Domain	Sec23/Sec24 beta-sandwich	Interproscan
IPR029006	Homologous_superfamily	ADF-H/Gelsolin-like domain superfamily	Interproscan
IPR036174	Homologous_superfamily	Zinc finger, Sec23/Sec24-type superfamily	Interproscan
IPR036175	Homologous_superfamily	Sec23/Sec24 helical domain superfamily	Interproscan
IPR036180	Homologous_superfamily	Gelsolin-like domain superfamily	Interproscan
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR037364	Family	Protein transport protein Sec23	Interproscan
IPR037550	Domain	Sec23, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11141	PROTEIN TRANSPORT PROTEIN SEC23	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0006888	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0030127	Cellular Component	COPII vesicle coat	Interproscan
GO:0070971	Cellular Component	endoplasmic reticulum exit site	Interproscan
GO:0090110	Biological Process	COPII-coated vesicle cargo loading	Interproscan
GO:0090114	Biological Process	COPII-coated vesicle budding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-