Gene detail

Detailed information of OALVG00000001350.1 in Oasisia alvinae Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OALVG00000001350.1	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 12	tig00000153	6242416	6260704	-

Gene Structure

More details in Jbrowse Sequence

CDS

OALVG00000001350.1

ACAGGACGACAACGAAGATGGATACCATATATTCTAGTTTCGATCAATATTGCTGCAATACACGCGGCCACAAACACAACTACTTCTAAGAAGTCAAACCAGGAAACAAGTTGGACGGACGTCTGGGCCGATTTGAAAGATTCAGTGTTCGCCCAGCAAGGCAGCAAGCTGTCGATGCAGTGCTCGGAGACTGACGACGACGCCGGCATCGAGGAGCCCCACTACCAGTGGAAGGACGCCCGCTCGCGTGTCGCCAACGACGGACGCTACTCCGTCACCGAGACCGGGGACCTGGTCATCAACGACGTCCAGCCGCGGGACAGTGGTCAGTACGACTGCATTGTGACGGGGTCGAGCAAGGATACCACGCCGACACCTCTCATTGTCCATCGTAACATCGTCGTGTACACGCTGCCTGAATACTCCCTCCAGCTGCAACTGACATACAACGTGCCGCGATGTGACTCGGGTATAAGACTGGACAAAGTGGACGAGATTACCGGACAACTGTGTCCGAAGACTCAGTGTCTGTTTAACGTCAAGGCAGTGTGCCGCTCCCGTAGGACTCAGTCTTCAAACGGCCACAGCGTCATGAAGCCACAAATCACGGTCATCATCCTCCACACGCAACATCCGGACTACGAACCACCGAAGTGTAATCCTCAGTGCATCAAGGACTCCGTCTTGGCACATCTAGATAAGGGATCCAAGAAAGTAGAGAAGCTGGCGAAGGCAGACGGTGACATGAACACCGGGATCGTGGGAGGGGTGAGGAAGAGGGTCTTGATGCAGTGTAGCAGCGGATACGTCCTCTACAAGAACTCGACGTGCCTGCCGTGTGCGCCCGGGACGTACAGCGCTGGTTGGGACAACGTGTGTCAGGCGTGCGCGCGTGGCACGTACCAGGCGGACTACGCGATGAAGGGATGTCTTCAGTGTCCAGACAAGTTGACCACACTCACGACAAAGAGCATCAACGCGTCGGCGTGTGTCCAGGAGAGCAAGGCTGGGGTGATCATCACGCCCCTCAAGGCCCTTGTCAACGACGTGTCTCATACAACATGGAAGGCCGCCGTGTTTCTGACCGGCGTCGTCGCTTCGGTCGTTGTCGTTACCGTTGGCATTTGCGTAGTGAAGATATACCAACGAGGCAAGAAGCAGGAAAAGATGACAAGAAACACTTCCAACGGGCTGATAACACAGACCGGGAGTCTGGTGAGTTACCTTAGCGGGGGCTCCAGAGACTCGCCCGGGCTCCAGAACAGCACACAGGCCAGAAACGACATCCTCGAACCTAACGAATTCGCTTCGTCCGGGTCAGTGAGAGGCGTGAGGTCACTGCCAGTGCAGACGTCACAGAACAATGCTGCCACAGAGAGGGCAAGCTGTGACCAGAAGATCTTCGTCCGACGCACCCACGACGCTCTACACGACAGACATCGTCACTCGCGGCACAGCGACCGAGACACAGGCGAGCCACGCAATGACGGAGTGCTCCGCAAGATCTCTAGGCTCTTGGACACGTTCATACCCAGTCGTAACACGAATAGTTACACACACACAAAGGATTACCACTACCGACTCGCCCAGGACCAAAATGATGACGTCACATCCGTTTCATCGGACACCGTCGAGCCGGAAGTTGCGTCGCTTCTCCACGGGAAACCTCGTCGTTCGAGACGTCACCGCGAGACTTACTCACGCCCACGCCGCCCCAGTCGTGTTTTGGAGACTATGCCTCCCACAGACTGCGATGGTCACGTGGTATGCCCCAAAAGGAGCAAGAACATCGAGACAGTCGGTACGGAGTGTGCCCCCGTGGTCTGCAGCTGTAGCCTGGAGCATCGGACCAGCGAGATGCAGCAAAACCAAAGCAGAACACCGTCTGCACGACACTCTTCAACAGGTGGATTACCATGCGACTCTCGATACATGTCCCGACCGCCAGAGAGCGTTACACCAATCAATCAACTGCCACGTCCACAGAACAGCGTTGTCAACGTTTCTGGCCGCGTTCAGAATGTCGGTGATATCGCCACCCCTTGCGAATCGCAGAAGAACTACCCGTCTGTACATAATTCAAGACGTTCTCGGCGCGGGAGTACCGCATCGGAAGATACGCCATCGATATACTGGACGAGTCCTCCCCGGAAGTCGTCTCATTCCCACGTGAATGTTTCTCACCAGAACTGTGACTGTCTCGATGCAAGAAACCCTTTGGAACTGTGCCAGCGAGAAGACGATTTGCGTGACACGTTTATCAACGAAACTGTTCCACAGCGGGTACAAATGTACAATAACTTCACAGGAATCGACTCCCATTTGGAATATACAGGGGCAGGTTGGGGCACCGAAGCGTACCGCTTAGCCGACACGCGTGGCTTGGCCGACACGCGTGGCTTGGCCGACACGCGTGGCTTGGCCGACACGCGTGGCTTGGTAGATGCGCGACGTAATTTTATAGACACAGGTGGACTCGTAAATAAACATGTCTCTTTATTACGTACGGACCGTGTGACCGAAAGGTCGCCTAGTGAAGCGTCCTCGGACCGTAGAGGCACGTATGAAGGAGCACAAGACATCGCGTGGGCCCCACCACCTCCGCCGCCGTCGGGTAAGTGGGTGCGTGTGTTACCACCGACTGCGAATCAGCAGCTGAACTGTACTTGCGATGCCGTGTCGGCAATAGTTTCCGTTCCGTATCAGCGGGGAAACCGGCAACAACAACAACAACAACACCGTCCACACGACCAGATGACGCCACCACAGCAGCAGCAGCAGCAGCAAACACTGCAGCAACAACAACATTGGCAGGATGATGCACTATATCCGCGGCATTTACAGCAGCAACGACAGCAACAGCAAATGCGACAAGAGCAATTACAGCAACAGCAGCCACAACAAAAGCAACAACACCGTGAATATAAGCAGCAACAACAACAACTATATCAGCAGCAACAACAGCTACACCAACAGCAACAACAACAACATAATACTCACCAACAACAACATAGACCCAAATATCAAGATAATCGTTGGCAACAACAATATCAACAACATATTTCTCAACAGCAACAGCAGCAACAACAACATCCGCCAGTAACGCTATTACAGTAA

Transcript

OALVG00000001350.1

TACAGGACGACAACGAAGATGGATACCATATATTCTAGTTTCGATCAATATTGCTGCAATACACGCGGCCACAAACACAACTACTTCTAAGAAGTCAAACCAGGAAACAAGTTGGACGGACGTCTGGGCCGATTTGAAAGATTCAGTGTTCGCCCAGCAAGGCAGCAAGCTGTCGATGCAGTGCTCGGAGACTGACGACGACGCCGGCATCGAGGAGCCCCACTACCAGTGGAAGGACGCCCGCTCGCGTGTCGCCAACGACGGACGCTACTCCGTCACCGAGACCGGGGACCTGGTCATCAACGACGTCCAGCCGCGGGACAGTGGTCAGTACGACTGCATTGTGACGGGGTCGAGCAAGGATACCACGCCGACACCTCTCATTGTCCATCGTAACATCGTCGTGTACACGCTGCCTGAATACTCCCTCCAGCTGCAACTGACATACAACGTGCCGCGATGTGACTCGGGTATAAGACTGGACAAAGTGGACGAGATTACCGGACAACTGTGTCCGAAGACTCAGTGTCTGTTTAACGTCAAGGCAGTGTGCCGCTCCCGTAGGACTCAGTCTTCAAACGGCCACAGCGTCATGAAGCCACAAATCACGGTCATCATCCTCCACACGCAACATCCGGACTACGAACCACCGAAGTGTAATCCTCAGTGCATCAAGGACTCCGTCTTGGCACATCTAGATAAGGGATCCAAGAAAGTAGAGAAGCTGGCGAAGGCAGACGGTGACATGAACACCGGGATCGTGGGAGGGGTGAGGAAGAGGGTCTTGATGCAGTGTAGCAGCGGATACGTCCTCTACAAGAACTCGACGTGCCTGCCGTGTGCGCCCGGGACGTACAGCGCTGGTTGGGACAACGTGTGTCAGGCGTGCGCGCGTGGCACGTACCAGGCGGACTACGCGATGAAGGGATGTCTTCAGTGTCCAGACAAGTTGACCACACTCACGACAAAGAGCATCAACGCGTCGGCGTGTGTCCAGGAGAGCAAGGCTGGGGTGATCATCACGCCCCTCAAGGCCCTTGTCAACGACGTGTCTCATACAACATGGAAGGCCGCCGTGTTTCTGACCGGCGTCGTCGCTTCGGTCGTTGTCGTTACCGTTGGCATTTGCGTAGTGAAGATATACCAACGAGGCAAGAAGCAGGAAAAGATGACAAGAAACACTTCCAACGGGCTGATAACACAGACCGGGAGTCTGGTGAGTTACCTTAGCGGGGGCTCCAGAGACTCGCCCGGGCTCCAGAACAGCACACAGGCCAGAAACGACATCCTCGAACCTAACGAATTCGCTTCGTCCGGGTCAGTGAGAGGCGTGAGGTCACTGCCAGTGCAGACGTCACAGAACAATGCTGCCACAGAGAGGGCAAGCTGTGACCAGAAGATCTTCGTCCGACGCACCCACGACGCTCTACACGACAGACATCGTCACTCGCGGCACAGCGACCGAGACACAGGCGAGCCACGCAATGACGGAGTGCTCCGCAAGATCTCTAGGCTCTTGGACACGTTCATACCCAGTCGTAACACGAATAGTTACACACACACAAAGGATTACCACTACCGACTCGCCCAGGACCAAAATGATGACGTCACATCCGTTTCATCGGACACCGTCGAGCCGGAAGTTGCGTCGCTTCTCCACGGGAAACCTCGTCGTTCGAGACGTCACCGCGAGACTTACTCACGCCCACGCCGCCCCAGTCGTGTTTTGGAGACTATGCCTCCCACAGACTGCGATGGTCACGTGGTATGCCCCAAAAGGAGCAAGAACATCGAGACAGTCGGTACGGAGTGTGCCCCCGTGGTCTGCAGCTGTAGCCTGGAGCATCGGACCAGCGAGATGCAGCAAAACCAAAGCAGAACACCGTCTGCACGACACTCTTCAACAGGTGGATTACCATGCGACTCTCGATACATGTCCCGACCGCCAGAGAGCGTTACACCAATCAATCAACTGCCACGTCCACAGAACAGCGTTGTCAACGTTTCTGGCCGCGTTCAGAATGTCGGTGATATCGCCACCCCTTGCGAATCGCAGAAGAACTACCCGTCTGTACATAATTCAAGACGTTCTCGGCGCGGGAGTACCGCATCGGAAGATACGCCATCGATATACTGGACGAGTCCTCCCCGGAAGTCGTCTCATTCCCACGTGAATGTTTCTCACCAGAACTGTGACTGTCTCGATGCAAGAAACCCTTTGGAACTGTGCCAGCGAGAAGACGATTTGCGTGACACGTTTATCAACGAAACTGTTCCACAGCGGGTACAAATGTACAATAACTTCACAGGAATCGACTCCCATTTGGAATATACAGGGGCAGGTTGGGGCACCGAAGCGTACCGCTTAGCCGACACGCGTGGCTTGGCCGACACGCGTGGCTTGGCCGACACGCGTGGCTTGGCCGACACGCGTGGCTTGGTAGATGCGCGACGTAATTTTATAGACACAGGTGGACTCGTAAATAAACATGTCTCTTTATTACGTACGGACCGTGTGACCGAAAGGTCGCCTAGTGAAGCGTCCTCGGACCGTAGAGGCACGTATGAAGGAGCACAAGACATCGCGTGGGCCCCACCACCTCCGCCGCCGTCGGGTAAGTGGGTGCGTGTGTTACCACCGACTGCGAATCAGCAGCTGAACTGTACTTGCGATGCCGTGTCGGCAATAGTTTCCGTTCCGTATCAGCGGGGAAACCGGCAACAACAACAACAACAACACCGTCCACACGACCAGATGACGCCACCACAGCAGCAGCAGCAGCAGCAAACACTGCAGCAACAACAACATTGGCAGGATGATGCACTATATCCGCGGCATTTACAGCAGCAACGACAGCAACAGCAAATGCGACAAGAGCAATTACAGCAACAGCAGCCACAACAAAAGCAACAACACCGTGAATATAAGCAGCAACAACAACAACTATATCAGCAGCAACAACAGCTACACCAACAGCAACAACAACAACATAATACTCACCAACAACAACATAGACCCAAATATCAAGATAATCGTTGGCAACAACAATATCAACAACATATTTCTCAACAGCAACAGCAGCAACAACAACATCCGCCAGTAACGCTATTACAGTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF07699	Ephrin_rec_like	Tyrosine-protein kinase ephrin type A/B receptor-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR011641	Domain	Tyrosine-protein kinase ephrin type A/B receptor-like	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR051647	Family	Mediator complex subunit 12	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46007	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 12	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003713	Molecular Function	transcription coactivator activity	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0016592	Cellular Component	mediator complex	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-