Gene detail

Detailed information of OALVG00000001291.1 in Oasisia alvinae Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OALVG00000001291.1	RNA BINDING PROTEIN	tig00000153	4355462	4371435	-

Gene Structure

More details in Jbrowse Sequence

CDS

OALVG00000001291.1

ATGGATTCTGTTGTAATCCCTGAAGAGGTAAAGAAGGAGATCCGATCCATCTTGCTCTCAAAGATCGGAGGCGTACGTCTCTCTGATTTCCAGAAAGACTTCTCTCGCTACGTCGGACACCCACTTGACCTGAAAGCACTCAGGTTAAACAGGTTGTCCGAACTGATCGCACTCATTCCTGATGTCGCAGTAATCGCTCGCAATGACAAGGATGGTCTTGACTACATCCGCGGCGTGAGGGATCCAAAAATGTTCATGAACAGGACAGCTTGCAAGGCCCAGTACAAACCCAAGCCGGGAGAGTTGGTGTCACAGGCGGCTAAGTCAACTGAGGGGAAGACGGCTTTTGTGGAAGTGGACATGAACTCAGAAGTTGTGAAACAATGGAGTAAGGAACTTGTACCCAACCGCCAGGGTCTCTATGCCGTGGGGTGCGTCAAAAACAGCATGACTAGAGAGGACATTGACAAAATCTTCTCGGAGTTTGGGGACATTGTGGAAGTGGGTCTTGCTGCAAAGTACGCGTTTATTCGCTACAGAACCAAGGAAGAAGCTCTCCGGGCACTCGTGGCCCTGGAAAGATCCGAGGTTGACCTGATTATTCCCACAGAAAAGAACCAAACTTCAAGGCAGGATGGTATGAGGAAACCTGACTCCAGTTCGCGATATAACCCCTCACCAGGCAAGACAAACAGAACATACAACAACAGGAACTCGGATTCTGATTCACAATTCAGTGGCCCAAAATGGGGATCCAGCCCTTGTAATGGGGTCAGAAACACGGACGCCCCATCGCCTTATGGAGAGCTAAGGAACTCCGGTGACGACCAGGTTGAAATGTTCATTGGAAACATACCCTTCAACGCTTCCGAGGATGACCTCTTGACCCTATTTGGTGATTTCAACATTGGTGACATCCGGTTGCGTGGTAATGATGTGAAGAGGTTTGCATTCGTGAAGCTTCCACCAGCCCAGTCTGCGTCACTCGTACAGAAATTCCACAAGAAGAAACATGGCAGGTTTGACCTTGTCGTAGCAACCGCAATAAACCGGACGAATCCAGATGCAACGCGGTCACCCCCCTCAAACGGACTCCCGAAGAATGAATATACACCGCAGAAGACGCAAAGGGTCAGCTGTGATTCGAGCGGTGACCATCAGGCCCCTCCATTGCCTGATCTGGAAACTGAACTTCCCATACCTGATTTGGAAAGTGAGCTTCAAATGCCTGAGCTAGAAAGTGAGCTTCAAATGCCTGAGCTAGAACCCGAGCTTCAAATGCCTTACTTGGAAAGTGATCTTCAAATGCCAGAGTTGGAGTACGCAGGGGATGAGTTCGACCAGCAGGGAAACTACGGAGAACCCGACAGATACACTGCCAACCAATACAATCGAAGACCGCGTTTGAATAACAGGTCACATTTATTTGTGAGCAACTTTCCATTTGGAACAACAGAAATGGAATTGCTGCAACTCTTTGCCGAGTTTGGAGCTGTTTACGTCAGGATCAAAAACAGCTTGAACGTGGAGAGATCGACATCGGCACTGATTACGTTCAACAGCGAAGAAGAGCGAGACTTCGCTTTCGTCAGTGCATACGGCAACTACTTCAAGAACCGCCCCCTAGTGGTCAACATTGCATACAGCTCGAAAACACCCGAGGAGGAATTTGCGATGCGCGTACAAATTGAACCACCATCAGACGATTTTCAACCACCAGCAGACGATTTTCAACTACCAGCAGACGATTTTCACGAGAATTTTATCGTGACTGTGCCTTCTGACAGAGAGGCCATTTCTCAGAGACACGTGCAAAAAGTGAACACGCCCGTCAATGGCGTATCCCAGCATGCACCACACCGCCAGAGGGCGCCCCTGCTGGTACAGACCTCCAGCTACATGTCGCAGCCTCCGCCGCTTGAAGCAGATGTACTGATGGTGACATCTCTTAATGACAGGTCGGAAACTGAATCGAAGAGTTGCTGTCGTGATGGGGAATCGACGCAAGCAAAACGTGATCTTCTGTCTCTTGCATCTGTTGCCTCTGTCTGA

Transcript

OALVG00000001291.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF12872	OST-HTH	OST-HTH/LOTUS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR025605	Domain	OST-HTH/LOTUS domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR041966	Homologous_superfamily	LOTUS-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24012	RNA BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-