Gene detail

Detailed information of OALVG00000000141.1 in Oasisia alvinae Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OALVG00000000141.1	GALACTOCEREBROSIDASE	tig00000009	2334657	2352441	+

Gene Structure

More details in Jbrowse Sequence

CDS

OALVG00000000141.1

ATGCGACGATACAAGCACTTACTTTACATGATTATTGTTGCTGGTTTTCTCGTCCGTGTCTCTGAGCAGTACCGTTATGTTGTGGATGGCGATAACGGCGTGCTAAGACGATTTGATGGCATCGGAGCTATTAGCGGGGGTGGCGCAACTTCTAAGCTGTTGCGGAACTACCCAGAAAAAGAGAGGAATGAGATTCTGGACTTTCTGTTCAAGCCTGGGTTTGGAGCAAGTCTCCAAATACTGAAAGTGGAAATTGGAGGAGATTCACAAAGCACAGATGGTGTCGAGTCGTCACACATGCACACAGAGGGCGCCACCAACTATCACCGTGGTTACGAATGGTGGCTCATGACTGAAGCTAAAAAGCGCAATCCCAGCATGCAACTGTACGGTCTCCCCTGGGTGTTTCCTGGCTGGTTGCGACAAGGTGGCCCAGCGTGGACCCCTTACGCAAATCGCACAAAATTAGTGAACTACATCATAAGCTGGCTGGATGGAGCCCGTGACACTCATGGTCTCATAGTGGACTATATCGGTGTGTGGAATGAGCGGCCGTATGACATTGAGTACATTAAGATGTTGAGAGAAGCACTAGATGAGCGAGGTCACGCCAGGGTGAAGGTTGTTGCCCCAGACTCTGCTAGTTGGAAGTTCCTGGATGACTTCCTGGAAGACCCCCAACTGGCCCAGGCTGTCGACATTATTGGGATCCACTACCCCGGGGCACAGAGCCCTTCCCTTGCTCTTCACACAGAACGCCCCCTTTGGGCATCCGAGGACTTCAGTTGTCACAACGACATAGCAGGGGGCGGATGTTGGGCTCGGGTGTTAAATGAAGGCTTTGTTGGTGGGTTCTTCACAGGGCACATCGCATGGAATCTTGTGACCGCCTACTATGACCATCTGCCATATTCCCGCAGTAGTCTGATGACCGCCAACCAGCCCTGGAGTGGACACTACGAAGTGACCTCTCCAATATGGATGACCGCTCATCACACGCAGTTCATGGAGATAGGGTGGCGCCATCTATCCCGCGGTCAGGGCGCAGGTCGACTGAGTGGAAACGGCACCTACATCAGTGTCACCAGTCCAGACTCGCGTCACCTGACCATCGTCATGGAAACCATAGACCCTAGAAATGCTCCGTGCTTCTACCCCATGCCCAATTATACAGTGGCCAGGGAACAGTCAGCCACATTCCAACTGAAAGGTTCCTTGACAAAAATAAAAGAATTAAAGGTTTGGTACTCGCATCTCAAGTTTGATGGCCAAACTAGCATCCTGTTCAAGAGAATGCCGGCAATTCAGGTTGTCAACGGTAGTTTCTCACTCACCCTTCTCAGGAACACTGTGTACACACTGACCACCCTAGCCGTGGGAACCAAGGGGAGTTACCCTCCCTCCCCCACCCCTCAGCCGTTCCCTCTGCCTTACAGAGACGACTTTGAAGGTTACCCTGAGTCAGCCGAACCATACAACTTCGCACCACAAGCGGGGTCATTCGAGGTCACACAGTCTGGCAGTGGGGGTCATGGAAAGGTCATGACCCAGACAGTGCCAGAACCACCAATAGACACCTGTCGCCCTCTGCGGATGACGCGACCAATCGCTGTCCTCGGGAATGCTACGTGGTCTGATGTATCAGTCGGAGTCGACGTCTACATCCACCAGCCACCAGAGGGCAGCACTGGGGTGTTTGTCGCGGCCCGTGTGCCATCGGGTGGTTGTGACGTCATGTATGCGGATGGGGTGTACTTCTGGGTGTCGCCAGGGAGGCAGGAGGTCGCCCTCACAGGGAACTACAGTAAGTCAGCCATGTACCAGGTGAAGACCTGGAGACTCAAGTATCAACAGTGGTACCACATGGGACTACATGTGCAGGGACGATATGTGACTGCAACACTAGATGGCAGCACTATCTTCAGTGTCCAGATTCCACTTGCGCCAGTTGGGCGCGGCTTCGTGGCTCTAGGAACGGAAACATTTGCTCGAGCTGACTTTGATAACTTTGTCGTCACAAAAGTAAAATATGCAGACTTCATATCTATAGATTTGACACTCTATAGTTGGACCAATACTGGCATTTCTCAGACATGTTGCACAACTGGTCTTGTGTGTTCACTTATGTATGTATGTTTCTTTTAA

Transcript

OALVG00000000141.1

GTTTGCGTTCGCGCCAACTGTACGTCAAATATGCGACGATACAAGCACTTACTTTACATGATTATTGTTGCTGGTTTTCTCGTCCGTGTCTCTGAGCAGTACCGTTATGTTGTGGATGGCGATAACGGCGTGCTAAGACGATTTGATGGCATCGGAGCTATTAGCGGGGGTGGCGCAACTTCTAAGCTGTTGCGGAACTACCCAGAAAAAGAGAGGAATGAGATTCTGGACTTTCTGTTCAAGCCTGGGTTTGGAGCAAGTCTCCAAATACTGAAAGTGGAAATTGGAGGAGATTCACAAAGCACAGATGGTGTCGAGTCGTCACACATGCACACAGAGGGCGCCACCAACTATCACCGTGGTTACGAATGGTGGCTCATGACTGAAGCTAAAAAGCGCAATCCCAGCATGCAACTGTACGGTCTCCCCTGGGTGTTTCCTGGCTGGTTGCGACAAGGTGGCCCAGCGTGGACCCCTTACGCAAATCGCACAAAATTAGTGAACTACATCATAAGCTGGCTGGATGGAGCCCGTGACACTCATGGTCTCATAGTGGACTATATCGGTGTGTGGAATGAGCGGCCGTATGACATTGAGTACATTAAGATGTTGAGAGAAGCACTAGATGAGCGAGGTCACGCCAGGGTGAAGGTTGTTGCCCCAGACTCTGCTAGTTGGAAGTTCCTGGATGACTTCCTGGAAGACCCCCAACTGGCCCAGGCTGTCGACATTATTGGGATCCACTACCCCGGGGCACAGAGCCCTTCCCTTGCTCTTCACACAGAACGCCCCCTTTGGGCATCCGAGGACTTCAGTTGTCACAACGACATAGCAGGGGGCGGATGTTGGGCTCGGGTGTTAAATGAAGGCTTTGTTGGTGGGTTCTTCACAGGGCACATCGCATGGAATCTTGTGACCGCCTACTATGACCATCTGCCATATTCCCGCAGTAGTCTGATGACCGCCAACCAGCCCTGGAGTGGACACTACGAAGTGACCTCTCCAATATGGATGACCGCTCATCACACGCAGTTCATGGAGATAGGGTGGCGCCATCTATCCCGCGGTCAGGGCGCAGGTCGACTGAGTGGAAACGGCACCTACATCAGTGTCACCAGTCCAGACTCGCGTCACCTGACCATCGTCATGGAAACCATAGACCCTAGAAATGCTCCGTGCTTCTACCCCATGCCCAATTATACAGTGGCCAGGGAACAGTCAGCCACATTCCAACTGAAAGGTTCCTTGACAAAAATAAAAGAATTAAAGGTTTGGTACTCGCATCTCAAGTTTGATGGCCAAACTAGCATCCTGTTCAAGAGAATGCCGGCAATTCAGGTTGTCAACGGTAGTTTCTCACTCACCCTTCTCAGGAACACTGTGTACACACTGACCACCCTAGCCGTGGGAACCAAGGGGAGTTACCCTCCCTCCCCCACCCCTCAGCCGTTCCCTCTGCCTTACAGAGACGACTTTGAAGGTTACCCTGAGTCAGCCGAACCATACAACTTCGCACCACAAGCGGGGTCATTCGAGGTCACACAGTCTGGCAGTGGGGGTCATGGAAAGGTCATGACCCAGACAGTGCCAGAACCACCAATAGACACCTGTCGCCCTCTGCGGATGACGCGACCAATCGCTGTCCTCGGGAATGCTACGTGGTCTGATGTATCAGTCGGAGTCGACGTCTACATCCACCAGCCACCAGAGGGCAGCACTGGGGTGTTTGTCGCGGCCCGTGTGCCATCGGGTGGTTGTGACGTCATGTATGCGGATGGGGTGTACTTCTGGGTGTCGCCAGGGAGGCAGGAGGTCGCCCTCACAGGGAACTACAGTAAGTCAGCCATGTACCAGGTGAAGACCTGGAGACTCAAGTATCAACAGTGGTACCACATGGGACTACATGTGCAGGGACGATATGTGACTGCAACACTAGATGGCAGCACTATCTTCAGTGTCCAGATTCCACTTGCGCCAGTTGGGCGCGGCTTCGTGGCTCTAGGAACGGAAACATTTGCTCGAGCTGACTTTGATAACTTTGTCGTCACAAAAGTAAAATATGCAGACTTCATATCTATAGATTTGACACTCTATAGTTGGACCAATACTGGCATTTCTCAGACATGTTGCACAACTGGTCTTGTGTGTTCACTTATGTATGTATGTTTCTTTTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02057	Glyco_hydro_59	Glycosyl hydrolase family 59	Family	Interproscan
PF17387	Glyco_hydro_59M	Glycosyl hydrolase family 59 central domain	Domain	Interproscan
PF21708	Glyco_hydro_59_C	Galactocerebrosidase, C-terminal lectin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001286	Family	Glycoside hydrolase, family 59	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR017853	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR035394	Domain	Glycosyl hydrolase family 59, central domain	Interproscan
IPR049161	Domain	Glycosyl hydrolase family 59, catalytic domain	Interproscan
IPR049162	Domain	Glycosyl hydrolase family 59, C-terminal lectin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15172	GALACTOCEREBROSIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004336	Molecular Function	galactosylceramidase activity	Interproscan
GO:0005764	Cellular Component	lysosome	Interproscan
GO:0006683	Biological Process	galactosylceramide catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-