Gene detail

Detailed information of MBSQW58_g4518 in Bathyacmaea lactea Gene info

Gene ID	Annotation	Contig	Start	End	Strand
MBSQW58_g4518	40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI	ctg7	98362	100739	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

MBSQW58_g4518

ATGCAGCTATTTGTACGAGCAACTGAAACTCACACAGTTGAGGTGACTGGAGATGAAACTGTGGAAGCAGTAAAGGTATGAATATGCAGATTAACAGTTTGAAATGCTAACCTCCACATCAATCTAATATATGAATTAAATAATTTACTTTCACATAATAAATTTGAAAACTGTCAGTTTGTTTCTAAGGAAAAATACAAACTATATTTCAAAAGTTAATTACTAGTTTTCTGCTGTTTGTTTGTATTTTTTCCAAAAGGAGATACAATGGTTTGAAGGTCAGGTTgttttcctctacgtttttacctcctttgacgtttcccgttgtagcctaatacaacagcatctacttcgctctcagttgagttcattttgctgtaatgagggttaatttactgaatgaatatcaataaataactgaaataggtctcactgctttcaagccacacatgagttccatggcacacaaccaacgctcttccagaattagtggaccatctcctattgtttactgccctcttgaatattgtgcctctctggagagtaccaagggtgtgtttggactgtaatcaaatgtttgtttcactatattatttctatgggactctgtgccaaacagacgaagaatggatcagatgtttagtaagaggagattttcaaggcactggcatattacatacctaaatatatatgtatgtctcgatgtgacccagttgttgtgtaaaccataagccctgtttatttcacaaatttggcaacaacctggtaaaaacaaattgtggttctagtaaaattagttcACAAAAAATACATATAATTGAATATTGATGACCATTTATTATTCGCTAATTAAGCCATACTTGATAATGATGTCTACATTGTTAATTTATTTCAGAACTTAATTTCCCAAAGAGAGGGATTCAGTGCCGATGATTTAATGGTCTCGTATGGGGGTAAACCCCTTGAAGGTGATTTCAAACTTGCTTCACTGGGTGAACTCTCCACTCTTGATGTTGAAGTTAGAATGATTGGTGGTAAGTATCTGGGGTTTCTTCAGTAATAAGAAGTTTGATATTTTTTGTAGTTTGCAGAAAATAAACAAATAAATTATAATTTTCAAAGCAGATAGGATTAGTATAGAAATTATTTTTGTTTTATTAGCATCCCTACTAGCATTTGTAGCCCATTTTGTTGATTTCTTCTTTTACAAGTCATAAAATAAATTATTGTTGGCTAAGAAttttttttttttattttttttATAAATATAACTGAATGTCCTGGTTTTATTTTTTAAAACTAGAATCAAATTTATTTTATGTCTGACATATCTATAAACATAAGTATTTGATCTGGTCTAATTTAATTGTTTATTTACAGGTAAAGTCCATGGTTCCCTTGCTCGTGCTGGAAAAGTTCGAGGTCAGACCCCAAAGGTAAGTTAAAGTAACATTAGATGAATAACTAGACCACCATTTTATAAGACTGGTCACTGGTGGTCAACGATACGGACAACAGCTGCTCTATTTCCAAAGCCATCTCATTTTCACAgatctgcagtgacttgatggtcatgacactggactgtcaaccaggaggtccagggttcgaatctcgttaaatgccggtttcaacctcgatgacttccagcctggttctcccttggcagtggatatgtagacgggactgtcaaggaaaagtgtctagtctgtcgggataggacgattaaattcggagacctgtttgcaattggtagtgcatgtaaaaggcacctcgacagttgaaactcgatgtaagagtaggcgatggtgccgctgccctgccaaagttctcccgtgtttcacacctaataaacaaatgtataaataaccgtatgtatgtctcgaaataacccaattggtgttgattagacaataaaccccatttcacttcattttcaaAACATTTCCCACTTTCAATCCGTAACAATTTGAACACGTTGCAGACatcgaacaggatatgttagtaaatcagatgtagcttatccatatatcttgtgtgatatttgtcaatatTTAAAAAGTATAAAGAGATCTAATCTGGAGAATATAAAATTATACATTATAACGCACAGCTCTACAAATATTTCAGTCTGTAGGTAGTCATTTAATATTACAAATTAATGAGTGGTATAAATGTATATCTTTCAGATTAATTTTCAGATAAACTTTCCTCTTCTGACAAATATTATATAATTTGTTTAACAGGTTGAGAAGCAAGATAAGAAGAAGAAGAGAACTGGACGAGCCAAGCGACGATCCCAATATAACCGACGATTTTTAAACGTTGTAGAAACATTTGGTAGAAAGAAAGGTCCAAATGCTAATGCTGGAAAGTAA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_PIM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240	ubiquitin	Ubiquitin family	Domain	Interproscan
PF04758	Ribosomal_S30	Ribosomal protein S30	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR006846	Family	Small ribosomal subunit protein eS30	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12650	40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0022627	Cellular Component	cytosolic small ribosomal subunit	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-