Gene detail

Detailed information of MBSQW58_g18407 in Bathyacmaea lactea Gene info

Gene ID	Annotation	Contig	Start	End	Strand
MBSQW58_g18407	40S RIBOSOMAL PROTEIN S28	ctg19	641795	644551	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

MBSQW58_g18407

ATGATTATCCGAGTGTTACTGAACTCTAGATAtagtccgagtgttgctgatctctaaatgatgttttttttttgtgtgtggttagcttcatttcgagtccgaaattggttcagcataaacctgcggtaaacgactgtaggcgattttgcatgcaagatgtatcacttttttctcaccacaatccgacaccactcaatagcatattgtataccattatcagtcgactccagaaccatgatgtaataatcccataaacaataagttgtcttaccatcaattacagtttcttattaaattgatttggtatgagCACCCCCTCCCCCCATGCACACtgtattcggccattgtcaagttgttcgaTTGTATCATAATTTCTGAATGAGATACTCAGATAGGTTCATATAAAACTCGAAACTAACTGATCACCTCTATCGAATTTGTATCTGCTAAATATAGCAAGTACAAAgctgtttgagcagattactattgcctggtaatgcttGTTTTATTCTATGCATTTTTTTTTTTTTAGGTCACTAAAGTTTTGGGCCGAACTGGGTCGCAAGGTCAATGTACACAGGTAAATAGTGTTTTTTTTTTACAAAACTATTTTGGAACGAGCACAATCTAATTGTTGCAATGTTGATGTATATTGTTGCAAAACATGATAAGGTGATATTATTTAAAACAAAAACAAGTGCTCTATAATCAATAAACACTCAAATGGATAATTCACTTCTTAAAATGTTTATATCAATGTTTTAGACTATTTCTAATATTTTCGAATATAAGCTAATGCAGGTCTATAGCTAAATCCTCACGCTATAGGCCTTCATTTATATTTGCTGATCTTGAGAGACTACAGCACTAATTTTGGATAACTAAACCTTTTTTAATTCACATTTAAAATTTTATTTCTATCCTTGAAGGAGGCTTTTTAAGTAGCATACAACTTTTGAAAGCCCTGTGTAATTTGTCATAAATTACCAAGCAAATCTAAAGATACCGACCATCATCTTCTCCAAAAGACAATGTTATCTACATATTCACAACTTGCAGAACTGTTATATCTGGGAAGTTTGAACATTATGATTGTTTGTTCTCAGTTCTAATTGATGGACATTAAATATCCCATTAGTTGTTCAGTTTGAAGTGTAATTAAGGCTGGACAGTAATTCAATCTGGATAATGACATCAAAAGATAGATATTTATCAACAACAGAACTAATAGAAGTCTGCCAGCCAAAGCAAACTAAGAGTCATCTGCTTTTTACTTTTTATTTAGAATTCAGTATCCatatgaggcgttgcgtgccacaagggcgaatacgccaccagctcgaaaatccgttttctgtggtaccggaattctcacatccatgctttattttctgggccagtcaagtaagcgatagtctattgaaatagaattatgttaattatgttatgggtatttccattttgcgaaactttgaatggcgattacgcaatccttgtttttggcatcttcgcccttgtggcacgcaacgcctcaATCTCGTCCATCATAATCATGATTATTATATCCTAATAGTTCATCTTCTCTTTATGATTGGTATAATTTGTTTTGTAAAGTTACTGAGAAATCAGTATTCATATTGTGATTAGAATGAATGGATTTCAGCATAGTTAATATAATTTCTGAATTACTGCTGCACATTCTACAATATGCACAGGCGTATTATATGTTTGATTTTGAGGAATTGTGCCACCGGAATACCATCTTTCACAACAAACACTTTTGATCGTGAAACCTATTTGCAATATCAAAACTGGTGTTGCGACATGGTTGGTCTTGGATTCCTGTCTTTGTTCTGATGTGTTAAGTACTGTCAACTGTTGATTTGTGACAGACCAGGTCAACGagagatggatagcaatatgttattgaaccttggtacacttattaagcatattgaggacatgatgtatgtagaaaatattgttgattggtttcacatggacataaaaagaattaaacagtggttgagacatgatagataaattatcaaagcctggtgcatttaatcaatagtgaggacatgaggcacatcagaaGCATTTGATCAGTTgtttattattgttcattgttagatttgaggagaatagcaagggaattaattatacacaaccggattaattttaagtaaattttgttcatgtagagattcatattttggaaataatggtgaccaaatttgacaatATCTTAACAGATTAGTGGACAGAGCAGTTATAATTAGTCAATTTTCAGTATACATGTAGATGTATATCGTTGGTGTGAATTTCTAATAAACAAAACCTGTTTAATTTGTTGGTTATCCATTGATTTGTCCATTTAAAAAGTTTGGATTGAAATACtacattcttttgagtggcacttagaagtggaataaaagaattacacatatgtaaatatcttagaactagtctgaaatgtcgaaaaagttttaagaagtgagatatccgtattatgtgtacttattataatatagtagtcatcGGTGTTTCCTCACACCTAAAGTTCTTCGTAGCTAAAAAATTAGAGCTGATACTGTAATGATATTTAATTAACTGAATATGTTTGTTTCATAGGTTCGAGTAGAGTTCTTAGATGAAAGTAACCGATCTATTATCAGAAATGTAAAAGGTCCAGTAAGAGAAGGAGATATTTTAACTCTATTAGAATCTGAAAGAGAGGCTAGGAGATTAAGATGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01200	Ribosomal_S28e	Ribosomal protein S28e	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000289	Family	Small ribosomal subunit protein eS28	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR028626	Conserved_site	Ribosomal protein eS28 conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10769	40S RIBOSOMAL PROTEIN S28	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000028	Biological Process	ribosomal small subunit assembly	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0022627	Cellular Component	cytosolic small ribosomal subunit	Interproscan
GO:0030490	Biological Process	maturation of SSU-rRNA	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-