Gene detail

Detailed information of MBSQW58_g17248 in Bathyacmaea lactea Gene info

Gene ID	Annotation	Contig	Start	End	Strand
MBSQW58_g17248	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	ctg2191	3004	5481	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

MBSQW58_g17248

ATGCCAGGAAAAACGTTACAACTATTCCTGAAAGGATTGGAAGGAACCACAACGGTTTACAGAATAGATGAGGTAAGCTATTTTGTGATATTATTTTATAGCATAAAACATAAAATAATCGCATCTCTGAGAGGAGATATACACGGAAATGCTTTATTGTCTACAAAACATTCAGCTGTAGTGAGGCACGCTTGCATTTCACAATTATTTTATTTTTAAGAAAGATTTAAAGCTTGTTAATGGATCAATTGTAGAATTTACACCATTGAGAATTCACGcggtgccaattattagaatggcgaaatgacacggtgccaattattagaatggcgaaatgacacggtgccaattgtccttgtggcgaaatAATGCAGAGAGTGCGTTAACGTGTTGAAGAATTGAAGCGGTGGCGAATTAAGACTATGACGTAATATTATGCCAATAAGTTATATAGTTCATTACTATAATTTTATTTGATTTTTTGCCATAATTTGGGGTACACGGATGGGATAAGTGTGAATATTCAATAACTTTGTAACTTTGCATAAACCCATCAACGTTCTGTGTACTGTTCTTTTTAGGATGCTACAATAGGCCAATTAATGACAATGATATCAGAAAAGAGTGGAATAAAACGGGATGATATGAGAGTTCTGTATTGCAGTGAGTATTAGTGAAGTTTGTAGTTTTCTGTTTACAGCGTGATGTGAGTATGTCACACTTTTAAATGTGTTTTGTGATGATGGAGGTGTGCGGTGGGAGGTAAAAAGATCGGCAACTAGTTCGCAGTTTACCAGGAACTATCCACTACAACCTAACGTATATTTTCTTTTTGCGTCGTTGAAACTCTGTATTTGTAGGTTCAACCCTGCATTCATTTACCGCCATTAATTTTATTTTTTGCCTATTTTTTTTTTAGAATTTCAATTCTCATATTCCCGAATATAGGTTTTCCTTTTGAGATTATATAAAATATTGGTCGGATATAATTACAGTCAGCGAAACAATTCTGTCTTCGTTGTTATGGTTGTAAGCACCCAGCACTAATTCTCAATCAGATAATTATTATCTCTACTACACTTTCTGCGTGAAGCAACATTATTTTTAATCCATGCCACCTCTGCTTTTGTAGCCATTACAGAAAATAACAATGGTTCTCGAGTAAGCTTAGTATATTATGTATTTTCATGTTAATTAATAATTTCATTACTTATTTCAGGTAAAGAGCTTCGGGAAACAGATGGTAGCAAGAAGCAGCAATATTTGTCTGATTATAATATTGCAGATTTAGGCAATTTATTCTTAGTTTTACGTCTTCTTGGAGGAACTGAAATTGTAGAAACCACACCTCCAAAGGTATTAGATCCAGATGTACAACTGACGTCAGAACCGGATATGATAACCTTTGATGACGATAAAGACGGACAACGAGCCAAGATGCCATGTGGACATGCAATTGGTGAGTTAGTGGATTTGTCAAAATTAAAACAGAAACAAACAAGATTGTCAGGAGTAAAACCAACTGCTACACCTAGAAAAACAATTGTCACATCAACTATCCGGCGACCTCTTGTAAATATTGATTCTAATCATGTCGGTTTATAGAAGTTTATCTTGACACAAATGAACCACGAACGTGACTGAACAACTCATTGTAATTGCTGGTCCATAACAAACAGCTTATACGTGAATCCTATTGACCCAGGTGATATTTAAAACTGGATTTATTGACCATAGAcgaattgtctccttgtcgaattgtctccaggtcgaattgtctccaggtcgaattgtcCTCAGGTTGTATTGCCAAAACATCAAAATCACAATTGTTTTTTAAATTCAGGTCCAGAATCCCTAACAGCTTACTGTAGAAGCTTGCTTTCTGCTGGAAAATATGAATTTAGATGTCCACACGTAGATCCTAGATGTGGACGACTATGGGAGTTTTATACAATACGAAAACTTGCTGTACTTACTTCTGCTGAACGCCAAGAGTTCGAAACAAAGATATCGACCAATTATCTTACAAAAGTCGTCAGAATCCAAGAGTGTCCGAAATGCCAATCATACTGTGAGAGGGAAAATAGCGAAGACATTCGGGTGATCTGTCCAATTTGTTCCAATAAGGGAGAGAAACTGTACGAGTTCTGTTGGTTCTGTTTGAAAGGATGGTTGACAGCGGGCACCAAGGATTGTGGAAACGCCAATTGTTCTGGAGAAGATCCACGGAAGAAGATTTTACGAGAAGCTCCTATAAAAGTCGTCGTAGAGGTCACAGGATGTCCCTCTATAAGATCCTGCCCAAAGTGTGGTCTTATGATCGAGCATATCAGAGATTGCAAACAGATGGTGTGCCCATGTGGTCAGAAATTCTGCTTTATCTGCCTGAAACAGGTCAACACTTCCGGCGAGTACCAATGTGGAGCTTGGAACTTTCAATGTTCAGTAGCCCCAATTCAGACGAATCTGGCTTAA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	ULD\|UBL\|NEDD8
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_PIM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240	ubiquitin	Ubiquitin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR031127	Family	E3 ubiquitin ligase RBR family	Interproscan
IPR044066	Domain	TRIAD supradomain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11685	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000151	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0031624	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0032436	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-