Gene detail

Detailed information of MBSQW58_g17066 in Bathyacmaea lactea Gene info

Gene ID	Annotation	Contig	Start	End	Strand
MBSQW58_g17066	SERINE HYDROXYMETHYLTRANSFERASE	ctg1956	10425	12934	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

MBSQW58_g17066

ATGGTGCAAGACTATAACAAAAACCAAAAAAATCTTTCTCAAGTAGATTCTGATGTGTTTTCTATAATACAAGAAGAGACGCTACGACAACATACAAAATTGGAGATGATTGCCAGTGAAAATTTTACAAGTACGGCTGTATTAGAAGCAACTGGCTCAACACTTACCAATAAGTATGCTGAAGGATATCCCACGGACATAGGTATTATGGTGGCTGTGAGGTAGTTGATAAGATAGAAAGTCTAGCCATGAGGCGTGCAAAACAGCTTTTTGATGCAGAATATGCAAATGTACAGGCTCATTGTGGAAGTTCTACAAATATGGCAGTTTACACAGGGTTTTTATCTGCAGGAGATACAATACTTGGTATGGATTTAGCACATGGTGGACATCTAACACATGGGGCAAAGGTTAGTTTTTCTGGTCAAAACTATAATGCGGTCTTTTATGGAGTTCATAAAGATACTCACTTAATTGATTTTAACGAGATTGAAGAAAAAATCAAACGGTATAAACCAAAATTGTTATTGCAGGTGCATCAGCATATTCTAGAATTATAGATTTCAGAAATTTGCAGAACTTACACAAAAATATAATGCACTTTTATTGGTGAACATAGGCCCATATAGCAGGACTAGTTGCAACTTCGGAGTACATCCATCACCTATTCCTTATGCAGATATAGTTACTACCACTACACATAAAACTTTACGTGGACCACGTGGAGGACTTATACTTGCAGGGAAAAACAAAGAAAATATATTTGGTCTTAAAACTCAGAAAGGTACAAATAAAAAATACTCACGTATAATTAATTCTGCAATTATGCCTGGTTTACAAGGTGGACCACTAATGCATGTTATTTAAACAAAAGCGTTGTTGCGTTTAAAGAGTGTATGAGTCCATCTTTTAAAAAGTACTCACAGCAAATTGTTTCTAATGCCAAGGCTTTATGTCAGACTTTACAAGATGGAGGTGTGAGTATTGTTAGTGATGGTACAGATAATCATCTCATACTTCTCAATTTAAAACAATTTGGCATTAATGGAAAAGAAGCAGAAAAGGCATTAGATGATGCTAATATTTCTGCTAATAAAATGGCATACCCTTTGATACAGAGAGTCCACTTGTTACATCTGGAATTCGTTTAGGAACACCAGCATTAACATCAAGAGGAATGAAAGAAAAAGACATGCAAATTGTTGGTCATTTTATTTTGAATGTATTAATAAGCAAAGCTGATAGTGGTGTAATTAAAAAAACTGCTAAAGAAGTAGAAGAATTTGTTGCTAGTTTTCCAATAAGAGAAAAGAATGCGGAGGATATGTAAAGATGACAAATAGAATAAGCATTGTTAATTTTAAGAGGGGGTCGTATCTTTTTGTGGAAGGAGAAAATAGTGATGGCACTTTTTTTATTATTCAAACAGGGAAGATAAGATTAACGAGAGATCTTAAGATTCTAGGTGATGAGAATACAAATTTAGGTCCTGGGGATTTTTTTGAAGTAGAATCAGCTTTTACAAAAAAACCACGTACTTGTACCGCTATTGCAGAAGCTGATAGCAAAGTTGTTATTGTTTCAAAAGAGATGTATGACGAACTTATTCAAAAAAAACCAACTCTTGTACAAAAAATAATTTTATCATTTTCCAAAAGAATGCGTAACTTGGACCACCAACTTACAAGTATTTCATTTAAACAAACAACAGTCATCGATTTTAATCATCTTGTATCTGTTGGTGAATATTATGAGAAAGAAGAACAATTACAACCTGCAGCATTTGCGTATCATCATTTTCTAAAAAATTTATCAGAAGAAGAAAAAAATTCTGCTTATGCAAAAAAGGCTATAGGACAACTTGCTCAAATAAAACAAAGCATTTCTGACGATAAACTTTTCTTAGAAGAAGATGTTTCTAAACCTGTCCGATTTGTTCCTAAAGGTACAATGATTTTTCAGAAGCTATGTTTGGAAATACTATGTATTTTTTTGCAATCAGGTGCTGTTAAAATTTGTAAAATTTCAAATAACCAAGAATTTCGCTTGCTGTACTAGGAAAAGGGGATTTGTTTGGAGAAATGGCACTTTTAGAAAACAAACCGCGTTCTGCTATAGCAATAGCGTTCAAAGATTGTACTCTATTGGTTATTACGATAAAACTTCCCTCTGATTATTAAACAACAACCAAATCTTTTACGCGTATTACTACGGTATTAGCGGAAAGAATATGGTTTGTGTATAGACAAATAGCAAATGTTATGTTACCAGAAGGAGAGGATCGACTGTATGATGCACTTCTTATGTTTATGGAAAAAAATGGGATTGATTACTCTAAAAAATCTCCAGCAGAACTTAATATGCCGTTAAACGATTTTTTACATCATACGGGTATTTCTCCTAAGGCGGGAAATGAATACTTTAAAGCATTGATAGCCTCTAATACTGTACACATAACACCTCAAGATACAATAGTTATTCATAATCCTTCTTTTTGTTCAAAAGTATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00027	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan
PF00464	SHMT	Serine hydroxymethyltransferase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000595	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR014710	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR018490	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR039429	Domain	Serine hydroxymethyltransferase-like domain	Interproscan
IPR049943	Family	Serine hydroxymethyltransferase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11680	SERINE HYDROXYMETHYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004372	Molecular Function	glycine hydroxymethyltransferase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006565	Biological Process	L-serine catabolic process	Interproscan
GO:0006730	Biological Process	one-carbon metabolic process	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0019264	Biological Process	glycine biosynthetic process from serine	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0046653	Biological Process	tetrahydrofolate metabolic process	Interproscan
GO:0046655	Biological Process	folic acid metabolic process	Interproscan
GO:0050897	Molecular Function	cobalt ion binding	Interproscan
GO:0070905	Molecular Function	serine binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-