Gene detail

Detailed information of MBSQW58_g15797 in Bathyacmaea lactea Gene info

Gene ID	Annotation	Contig	Start	End	Strand
MBSQW58_g15797	GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN	ctg1103	30395	33557	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

MBSQW58_g15797

ATGGATAAGCCGGCTAAATTTACAGAATATAAAGATGCAAAAGAGCGTATTCAAAACTTTGATGAGTTTTTACAAACAACAAATGAAAAAGAAAGAAAAATACAAGCAGGTCGCTGTATGGATTGCGGAGTGCCATTTTGTCATTCTTCATATGGTTGTCCTGTAGATAACCTCATACCAGAATGGAACGACCTCATCTATCACAGTAGGTGGAAAGAAGCGTTTTACCGCTTACGCAAAACTAATAATTTTCCCGAATTTACAGGGAGGGTTTGCCCCGCACCGTGTCAAAGTTCGTGTGTTTTGGGAATTAACGAAGATTCTGTAAGTGATTAAAGACAACGAATGTGCCATTGCAGATAAGGCATATACCGAAGGGTGGATTGTCCCATCTTTACCAAAAGTTCGCAACGGAAAAAAAGTATGTGTTGTTGGAAGTGGACCCGCAGGTCTTGCTGCCGCAGAGCAACTAAACGAAAGAGGTTATATAGTAACTGTCTTGGAACGAGATGATAGAATTGGCGGACTGTTGATGTATGGTATTCCAAACATGAAACTGGATAAAAAGCTCTTAGAAAAACGTTGCAAAATTATGGAAGACTCGGGAGTAATATTCAAAACAGGTGTATATGTGGGCAAAGATATACGAACAGAAGCACTATTAAAAGATTTTGACGCAATTTTACTTGCTCGCGATTCACAAATCCTCGGGACTGCAAGTAGTCAACAGAAATAAAAAAAGGCATTCACTTTGCCATGGAATTTTAAAAGCAAATACAAAAAAGTCTTTTTGGATAGTAATCTTTTGACAATAATTATATTTCTGCAAAAGATAAACATGTTATTGTAATTGGTGGTGGAGATACTGGAAATGACTGCATTGGTACATCCATGCGTCATAAGGCTGCCTCTGTTACTAATTTTGAGTTATTACCAAAACCACATCTTAAGCGTAGTAACGAACATCCATGGCCTTTATACCCACGCATATTAAAAAGCGACTACGGACATTCTGAAGTGCACGCTGTTTTTGGAAAAGACCCACGAGAGTTTTCTCTATTAACAAAAGAGTTCTTAAGTGATGATGACATACATGTATCGGCAATAAAAACAGTCCGTGTACAATGGGAAAAAACACCAGATGGACCTCCGCAAATGAAAGAAATTAAAGAATCGGAAGAAATATGGAAAACAGACCTTGTCTTACTTGCCCTAGGATTTTTAGGACCAGAACAAGCTCTATTAGATACTCTAGGTGTAATGAACGTGATGCAAGAAGTAATGTTAAAGCAAAATTTGGTGATTTTGCTGGTTCAAAAGACAAAATATTTAGTGCGGGAGATGCACGGCGTGGTCAGTCACTCGTTGTATGGGCAATTAAAGAAGGTCGCGAAGCTGCTATAAAAATAGATGAATATTTGCAAAAAAAATAATTTATTTTAATTATGTTTTATCACGTTTGTTTTTATAAAGATACATATTTTCTACATACTTTGCTAACACGTCAGGCTCTATGTTTATTGTATATCCCGTATGTACGTATTTTAAGTTAGTCTTTTCTTTGGTGTGAGGAATAATATTACAAGTAATTATACATTTATTATCATCAACTTCTGCAATAGTAAGACTTATTCCATCAAGAGTAACACTACCCTCTTTTATCATATACTTCATATACTGTTTGGGAATTAAAACTCGCAAAAAATAATTTTTATCATTTTTGTTATCATTACTAGAAGTATCAAAAGACTCTACCCTTCCTACATCTGCTACATGCCCCGTAACAAAATGCCCACCCAATCTATCTGATGCCCGCAATGTCTTGTTTCTACTCTTTACAAAGATCATCTTTCCAATGTTCAACCTAATGATGTTTTACTAAGAGTTGCAGACAGCATTTCTACTACAAGCCATTTTTTGACATGCAAAAGCCAATTGCTTTTTTCTATCACGGTTAGGCATACACCATTAACAGAAATAGAATCGCCAATTTTTATACCTTTGTGAACACGTCTCATCGCTATACGCAATTGCACATATTTTTCTTTATAATAATTTGTTATACGTGTTATGTACGCACATTCTTCTACAAGACCTGTAAACATATAAATAGTATAATATACTGACGCATTTTTAATACTTGTACATTCCTCGTATATAATGTACTTGACAAATAATATTGTTTTTTTGTATAATAAACATTAACAAACAATGTTGTTGTTTATCTTAATTTATGGAAAAAATATTACAAACAATAAAATCAACTCTTGAAAATGTCTCTCTGGCTTTTTGTGGAGAGTATGTTCTAAAAGATAAAAATGGCGTCTCATATAAAGAAATATATGAAAACATATCACATCCCCTAGGAAAAGTGGGTGCTATTCAAGATAAAAAAAAATTTAGCAAAAGACATGAGTAAATCGTTAGAAGTGTATGGCAAACAAAAAAAAACAAATACAGGCTAAATCAGGAAATAATTCATATGATTAGCTAGCCATCAGAAGAGGATTATTCTTTTTCCTAACCCACAAACTTTACAGGCTTATAAAACGTAGATCCAAGCTTTGTAGATTTTATTAAAGAATATTCAACGAAAGAGCAAAACGCACGACACAGCCTAACTAAAAACAAGGACAAACGTATATACTAAACTTGCTCATGCTGGCATTTTGCTCAACATGTTATTGAGATATTTTAGCCAAATATTATAAATACTTCGTATTCATTACCAGGTATGTTTGTTGGCATTATGAATGATAAAAATTGGTGGGTTGTTGCCATAGTTGTATCTTTTACCTCATTTTTTGACTATAAATCTCAAAAATCAAAAAAAAGCATAAAAAGCATAATTTTTTCAATAAAAGCTACTTTAATTATTAGTATTATTGTATAATATCTATAATGAATAATAAATTATATATAGGTAATCTTTCTTACCAGTAGATGAAAGCACACCTATCAGGGTGCGTTTGGTGCTCACGGCACAGTTAAATCAGTTAAAATTATTACTGATTATGAGTCAGGCAGAAGCAAGGGTTTTGGTTTCGTAGAAATGGAAACCGAAGAAGAAGCTCAGGCATGTATCGATAATCTTCATGGCAAAGAAATAGATGGTCGTGCAGTTAATGTCAATATTGCACGCGAAAGACCTGCTAATCGCTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF13450	NAD_binding_8	NAD(P)-binding Rossmann-like domain	Domain	Interproscan
PF14691	Fer4_20	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR009051	Homologous_superfamily	Alpha-helical ferredoxin	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR028261	Domain	Dihydroprymidine dehydrogenase domain II	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR051394	Family	Glutamate Synthase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43100	GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-