Gene detail

Detailed information of MBSQW58_g15209 in Bathyacmaea lactea Gene info

Gene ID	Annotation	Contig	Start	End	Strand
MBSQW58_g15209	DIHYDROXY-ACID DEHYDRATASE DAD	ctg905	14978	18175	+

Gene Structure

More details in Jbrowse Sequence

CDS

MBSQW58_g15209

ATGCGAAGTGGAATAGAAGCAATTGTAGGAGAATCTTTTGCCGAAATTTTTGCAGGAAACTGCACAGCTTTGGGAGTGCCTACTGTAGTTTTATCTAAAGAAAAAATATTGGAAATTCAAAAAGCTATTAACAACAATCCTCAAACAGAAATTGTAGTAGATGTTGAAAATAACCTTGTAAAGGTTGGAGAAACACAATATAAGGCAACTATTGCAACGCAGGATGAAGATTTTTCAAAACCAATTGTTGGTCTTGCAAGTGCAGGTAGTGATGTAAGCCCTTGTAATTTACATCTTGATGACATTGCAGTTTTTTCAAGAAATAGACTGAGAGAACTCGGTGCCTTTCCTATGACCTTTCATACCTTTGTGGTAACAGATGGTGAGGCAATGGGACATGAGGGAATGAAGGCTTCTCTTATCTCAAGAGATACAATAGCTGATGTTATAGAACTTGTGGTAACAGGACACCAAATGGATGCTATTTTTGGACTAGGTGGATGTGATAAAACTATTCCAGGTACAGTAATGGGCATAGCTCGATTAAATAGACCATCAGTATTTGTATATGGAGGTACTATTCGAGCAGGTCATTGGAATGGGCAGGCCATAGACATTGTAAGTGCTTTTGAGGCAGTGGGATCGTTTAGTACTGGTAAAATTGATGAAAAGGAACGATATGCAATAGAATGCCATGCCTGCCCAACAGCAGGTGCTTGTGGAGGAATGTACACAGCAAATACAATGGCGTCTGCCATGGAAGCAATAGGAATTAGTATTCCAGGATCCGCTTCTGCACCTGCTAATGTAGAAAATAGAGAACAAATTATGCGAGAATCAGCAGAAGCATTAACACTCTGCATAGATAAAGATATAACTCCAAGTAAAATATTAACAAAAAAAGCTTTTGAGAACGCTATACGCACAGGAATGGCATTAGGTGGTTCTACCAATATGGTTTTACATCTTTTAGCAATTTCAAGAGAGTTAAATATCGGACTTACCATAGATGACTTTAATGCCTTTTATGATAACACTCCAGTTTTGACAGACATGAAACCAGCAGGAAGATATGTCATGGAAGATTTACATAAAGTTGGCGGAGTAAAAGTTGTAATGAAAATGCTTTTAGAAAAAGATAAGCAGAAGGTAATTAAATCTTTTGACAATCCAGAACGCACACAGGGTCCAATAGTGGTACTCAAAGGAAATCTTGCAAAGGAGGGATGTGTACTAAAAACCTGTGGAAGTCATGGGGAAATTTTACACAAAGGTCCTGCACAAATTTTTGAGAACGAAGAAGATGCCCTTGCTGCAATTTTGGCAGGAAAAATAGTAAAACAAGATGTGGTAGTTATTAGATACGAAGGTCCAAAAGGAGGACCTGGAATGAGAGAAATGCTTTCTCCCACTGCTGCCATAGCTGGTGCAGGATTACATAAAGATGTAGCCCTTATTACTGATGGAAGATTTTCTGGTGGAAGCCATGGCATTGTTATAGGTCATGTTGCTCCCGAAGCTCAGGTGGGTGGAACCATTGCTATACTACAAGAGGGAGATATTATTACCATAGATACAAAAAATAAAAGTATAAGTGTTAATCTATCTGATGAAGAAATTGTTAATCGAAAGAAAAAATGGACAGCACCTGCAGAGCGATATACACATGGTGTATTTAAAAAATATTACAATAGCGAAAAGGATCTTGCCTTTGTACGATGTAAATTAAAGGGACTTCTTAGTGGGCAGGTGCTAAAAGAGACTATAAAAACTCAAGATGCCTTAGAAATTGCAGATGTAGAAAACAGCAAAGTAGATGTTATTTTGCCACCAAAAGTTGTACTAACCGTAACCGTGGCTGCAGAGGCACTTAAAGGTGATACTGCAACAAGTGTTACCAAAATTGTAGAATGTGATACTGGAGCAAGGGTAAAGGTTGCTGGATTTATTAAAGAGGGTGAAAGAATTTTGTCTTGGAATGTTTTTATATATGCTTATCTTGTTGATGACAAAGAACACATAGCCTTGGTTATGGGAGATATAAAAAAATCTGAACATGTATTATGTCGTATACACTCAGAGTGTCTGACAGGTGAGGTAATGAATTCTCTTCGTTGTGATTGTAAAGAACAATTAGATACTGCTTTGGAAAAAATTGCAAAAAGGAAAGAAGGAGTGGTGGTGTATTTGCGTCAGGAAGGTAGAGGAATTGGTCTCATAGAAAAATTAAAAGCATATAATTTACAAGATGAAGGCATGGACACCGTTGAGGCAAATATAGAGCTTGGACATCGAGCTGATGTTAGAAATTTTAAAACTACGGCGAGACATTTTAATAAGTCTTGGCATACGTTCTGTAGATTTAATGACCAATAA

Transcript

MBSQW58_g15209

ATGCGAAGTGGAATAGAAGCAATTGTAGGAGAATCTTTTGCCGAAATTTTTGCAGGAAACTGCACAGCTTTGGGAGTGCCTACTGTAGTTTTATCTAAAGAAAAAATATTGGAAATTCAAAAAGCTATTAACAACAATCCTCAAACAGAAATTGTAGTAGATGTTGAAAATAACCTTGTAAAGGTTGGAGAAACACAATATAAGGCAACTATTGCAACGCAGGTACAAAAGTCATTACTCGATGGCTCTTGGGACACTACTAACATAATGCTCTATAACGAGAAAGAAATACAAAGAGTATATGATTCTCTTCCGTATATACAATTACAATAGTATATATAATTTAGTCCATAATTTAGTATGGGGGTAATACAATGAATTTAGAAAATAAAAATAAATACAGCAAAAACATGACTGTGGGAGTCGAAAAAACTCCTAATAGAGCAATGTTAAGAATTTTGCAGGCATGAAGGATGAAGATTTTTCAAAACCAATTGTTGGTCTTGCAAGTGCAGGTAGTGATGTAAGCCCTTGTAATTTACATCTTGATGACATTGCAGTTTTTTCAAGAAATAGACTGAGAGAACTCGGTGCCTTTCCTATGACCTTTCATACCTTTGTGGTAACAGATGGTGAGGCAATGGGACATGAGGGAATGAAGGCTTCTCTTATCTCAAGAGATACAATAGCTGATGTTATAGAACTTGTGGTAACAGGACACCAAATGGATGCTATTTTTGGACTAGGTGGATGTGATAAAACTATTCCAGGTACAGTAATGGGCATAGCTCGATTAAATAGACCATCAGTATTTGTATATGGAGGTACTATTCGAGCAGGTCATTGGAATGGGCAGGCCATAGACATTGTAAGTGCTTTTGAGGCAGTGGGATCGTTTAGTACTGGTAAAATTGATGAAAAGGAACGATATGCAATAGAATGCCATGCCTGCCCAACAGCAGGTGCTTGTGGAGGAATGTACACAGCAAATACAATGGCGTCTGCCATGGAAGCAATAGGAATTAGTATTCCAGGATCCGCTTCTGCACCTGCTAATGTAGAAAATAGAGAACAAATTATGCGAGAATCAGCAGAAGCATTAACACTCTGCATAGATAAAGATATAACTCCAAGTAAAATATTAACAAAAAAAGCTTTTGAGAACGCTATACGCACAGGAATGGCATTAGGTGGTTCTACCAATATGGTTTTACATCTTTTAGCAATTTCAAGAGAGTTAAATATCGGACTTACCATAGATGACTTTAATGCCTTTTATGATAACACTCCAGTTTTGACAGACATGAAACCAGCAGGAAGATATGTCATGGAAGATTTACATAAAGTTGGCGGAGTAAAAGTTGTAATGAAAATGCTTTTAGAAAAAGGTTTGTTACACGGCGACTGTCTCACTGTTACTGGTAAAACTGTTGCGGGAAAATTTACAAAATTGTACATATACTTTAGATAAGCAGAAGGTAATTAAATCTTTTGACAATCCAGAACGCACACAGGGTCCAATAGTGGTACTCAAAGGAAATCTTGCAAAGGAGGGATGTGTACTAAAAACCTGTGGAAGTCATGGGGAAATTTTACACAAAGGTCCTGCACAAATTTTTGAGAACGAAGAAGATGCCCTTGCTGCAATTTTGGCAGGAAAAATAGTAAAACAAGATGTGGTAGTTATTAGATACGAAGGTCCAAAAGGAGGACCTGGAATGAGAGAAATGCTTTCTCCCACTGCTGCCATAGCTGGTGCAGGATTACATAAAGATGTAGCCCTTATTACTGATGGAAGATTTTCTGGTGGAAGCCATGGCATTGTTATAGGTCATGTTGCTCCCGAAGCTCAGGTGGGTGGAACCATTGCTATACTACAAGAGGGAGATATTATTACCATAGATACAAAAAATAAAAGTATAAGTGTTAATCTATCTGATGAAGAAATTGTTAATCGAAAGAAAAAATGGACAGCACCTGCAGAGCGATATACACATGGTGTATTTAAAAAATATTACAATAGCGTACAGTCTGCAAGTAAGGGTGCTAATACAAGCTAGGAATTTTATAGTCAATTTTTAAAAAAAATAGGCTTAAAAGATTATGATGGAATTTAGAACTTAGATTCATTATATATATCATTCATTAACTACATCAAGGTAAAATAAGGTATAATATATATATGAAAGCAGGACAACTAGAAAAAGGAATGTATATTCTTTATAAAAATGATGACCCATTTTTGGTAGTAGAGCGTGAATTTGTTAATCCAGGAAAAGGATCTTGCCTTTGTACGATGTAAATTAAAGGGACTTCTTAGTGGGCAGGTGCTAAAAGAGACTATAAAAACTCAAGATGCCTTAGAAATTGCAGATGTAGAAAACAGCAAAGGTCAGTACATGTACGAAGATGGGCAGGATTTTCATTTTATGAATGAGAGAGTTTTGAGCAATATACAGTGGCAATGACTCAGCTCGAAAATCATAAAAATTATTTGCATGAGGGGGAATCGTATCAGGTTGTATTTTTTAACGGAAATGCAGTAGATGTTATTTTGCCACCAAAAGTTGTACTAACCGTAACCGTGGCTGCAGAGGCACTTAAAGGTGATACTGCAACAAGTGTTACCAAAATTGTAGAATGTGATACTGGAGCAAGGGTAAAGGTTGCTGGATTTATTAAAGAGGGTGAAAGAATTTTGGTAAATACAGATACAGGCAAATACGCAGAACGGGTTAATTTTAATTTTAAAATACAATGATTACTCCAAGTTAAAAGTAAACTTCCTACTAGTCTTGGAATGTTTTTATATATGCTTATCTTGTTGATGACAAAGAACACATAGCCTTGGTTATGGGAGATATAAAAAAATCTGAACATGTATTATGTCGTATACACTCAGAGTGTCTGACAGGTGAGGTAATGAATTCTCTTCGTTGTGATTGTAAAGAACAATTAGATACTGCTTTGGAAAAAATTGCAAAAAGGAAAGAAGGAGTGGTGGTGTATTTGCGTCAGGAAGGTAGAGGAATTGGTCTCATAGAAAAATTAAAAGCATATAATTTACAAGATGAAGGCATGGACACCGTTGAGGCAAATATAGAGCTTGGACATCGAGCTGATGTTAGAAATTTTAAAACTACGGCGAGACATTTTAATAAGTCTTGGCATACGTTCTGTAGATTTAATGACCAATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00920	ILVD_EDD	Dehydratase family	Family	Interproscan
PF00925	GTP_cyclohydro2	GTP cyclohydrolase II	Family	Interproscan
PF09285	Elong-fact-P_C	Elongation factor P, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000581	Family	Dihydroxy-acid/6-phosphogluconate dehydratase	Interproscan
IPR000926	Family	GTP cyclohydrolase II, RibA	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR015365	Domain	Elongation factor P, C-terminal	Interproscan
IPR015928	Homologous_superfamily	Aconitase/3-isopropylmalate dehydratase, swivel	Interproscan
IPR020558	Conserved_site	Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site	Interproscan
IPR032677	Domain	GTP cyclohydrolase II	Interproscan
IPR036144	Homologous_superfamily	GTP cyclohydrolase II superfamily	Interproscan
IPR037237	Homologous_superfamily	IlvD/EDD, N-terminal domain	Interproscan
IPR042096	Homologous_superfamily	Dihydroxy-acid dehydratase, C-terminal	Interproscan
IPR050165	Family	Dihydroxy-acid dehydratase IlvD/Edd	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21000	DIHYDROXY-ACID DEHYDRATASE DAD	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0003935	Molecular Function	GTP cyclohydrolase II activity	Interproscan
GO:0004160	Molecular Function	dihydroxy-acid dehydratase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0009082	Biological Process	branched-chain amino acid biosynthetic process	Interproscan
GO:0009231	Biological Process	riboflavin biosynthetic process	Interproscan
GO:0016836	Molecular Function	hydro-lyase activity	Interproscan
GO:0043043	Biological Process	peptide biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-