Gene detail

Detailed information of MBSQW58_g15117 in Bathyacmaea lactea Gene info

Gene ID	Annotation	Contig	Start	End	Strand
MBSQW58_g15117	RECOMBINATION PROTEIN RECR	ctg886	82877	85155	-

Gene Structure

More details in Jbrowse Sequence

CDS

MBSQW58_g15117

ATGCATTATTATTCGGATACAACTGCTAATTTATTACGCCCTAAAGTTTTTTCAGAACTAACTGGACAAGAGTTTGTAGTAAATACCATAATGAGTAGCTTAGAACAAAATAATTTTGCAACACGCATATTTGTTTTGTGGACCACGTGGTGTGGAAAAACATCAGCAGCACGCTTGTTGGCACTTGCTATTAACCGTCCCGAAAATGCTTCTTTGCAAGAGCTTAATTATGAAGGAAGTAAAGATATTCGTGGAGGAAAATCTCTTGATGTTATGGAAATTGATGGAGCTTCTTATACAAGTGTAGATAACATTAGAAGCATTAGAGAAGAATTAATGTACAAGCCAGTGCAATTTTTGTATAAGGTATACATTATAGACGAAGTGCATATGCTATCAAAGAGTGCTTTTAATGCCTTGCTTAAAACAATAGAAGAGCCACCAGAATATGTAGTGTTTATATTTGCAACAACAGAATATCATAAAGTACCAGCAACTATTCGTTCACGATGCCAGCGGTTTATATTTAAAAAAATTGCTATTAGAGACATAGAAAAAAAACTTGTTGGAGTATGTGAAAAACAAAACATAACTGCAGATGAAGATGCACTTCGTTGGTTGGCAAAAGAGGCTGATGGATCTTTGCGTGATGCCTATACTTTGTTTGATCAAATAGCAGCATTTAGTAAAAACAACATCACTTTAGAAAAAATTAAAACACATCTTGGTCTTGCAGGATTAGACACCCTTAATATGTTATTTACATATTGTGTAGAGGGTAAAAAAAAGAAAGTATTAGAGTTTGTTTCAGAATTATCTGAACACGGGGTGTCTGCAGAACAAATTGTTTTTGAGTCTTGTGAATATATTAGAAATATACTTCTTATAAAATCAGGAATTACATCGTCAGATATTTTAGGGTATGCAAAAAGCCAGTATGAAGAAAGTGTATATAAAAACCTGCTTGAATATAAAATAGAATACATGCTGTCTTTGTTACTGACCTGTTATAGAAATTTACGATACACAGTACGACAGAGATTTGAATTAGACTTTACTTTTTCTCAATTATGTAATATACAATCGTATGTTCCACAAGAAGAATTAGTAAGGAGGCTAGAAAAATTAAAAAATAATATTGAAGATACAAATACAGAGTTAACTACAACATCTTTATCTCACAATGCACCACTTAAAGATGTTGTAGAAGAAAATACTTCCAATGTTAATATTCAAAATGCAACAAAAAATAGTATTACCTTGTGGCAAGAGGTTATGATAGAAGTACAACAACAAGATGAACGACTTGCAGTATTATTAGAAAGTGCTACATGTTGCATCAAAAAAAATGTATTTGAATTAGTTTTTTCTGATGAGTTTGTATACTCACGATGTGTGGAGCAAAAAAATGATATATTAAACATGGTGCATGTTGTATGTGGTAATACATGGGATATTTTTTTGACATATAAGGAAAAAGATAAAAAAAGCGAATCTGTACTTGATAATCAAAAAACAGAATTTGACAAACAATTAGAAGTGGCACATGAAGAACATAAAAAAGAAAAGCAGGCAATAAAAGATGTTCCCTCTAGTGTAAGAGATGCTTTAGATGTTTTTGGTGGTGATATAGAACATATTGCACAAGAGTTGTCTACTTTACATGAAGAAATACAACCATGTTTAGAGTGTGGTAATCTTACAGAAATAAATCCTTGTGATATATGTTCTGATGTTAAAAGAAACACACAGCAAATATGTGTTGTCTCTCACACGCAAGATATTATTGCCCTCGAATTAAGCCAATCATTTTTTGGTTTGTATCATGTATTAGGTGGACTTATTTCTCCTCTTGAAGGAATTGGTCCAGAAAATTTGACCATAGGACAATTAAAAGATAGAATAAACAAACGATCTGCTAAAGAAGTTATTCTTGCCACAAGTCCGACCATGGAGGGAGAGACTACAGCACGTTATGTCTACGATGTATGCAAAACTTCTGATGTTGCTTTTACTCGCATAGCTCAAGGCATGCCCATGGGTGGAGATTTTGAATATACCGACAGATACACCATTGCTAAGTCTCTCCATGCACGTGGAAATTTGGTATAA

Transcript

MBSQW58_g15117

ATGCATTATTATTCGGATACAACTGCTAATTTATTACGCCCTAAAGTTTTTTCAGAACTAACTGGACAAGAGTTTGTAGTAAATACCATAATGAGTAGCTTAGAACAAAATAATTTTGCAACACGCATATTTGTTTTGTGGACCACGTGGTGTGGAAAAACATCAGCAGCACGCTTGTTGGCACTTGCTATTAACCGTCCCGAAAATGCTTCTTTGCAAGAGCTTAATTATGAAGGAAGTAAAGATATTCGTGGAGGAAAATCTCTTGATGTTATGGAAATTGATGGAGCTTCTTATACAAGTGTAGATAACATTAGAAGCATTAGAGAAGAATTAATGTACAAGCCAGTGCAATTTTTGTATAAGGTATACATTATAGACGAAGTGCATATGCTATCAAAGAGTGCTTTTAATGCCTTGCTTAAAACAATAGAAGAGCCACCAGAATATGTAGTGTTTATATTTGCAACAACAGAATATCATAAAGTACCAGCAACTATTCGTTCACGATGCCAGCGGTTTATATTTAAAAAAATTGCTATTAGAGACATAGAAAAAAAACTTGTTGGAGTATGTGAAAAACAAAACATAACTGCAGATGAAGATGCACTTCGTTGGTTGGCAAAAGAGGCTGATGGATCTTTGCGTGATGCCTATACTTTGTTTGATCAAATAGCAGCATTTAGTAAAAACAACATCACTTTAGAAAAAATTAAAACACATCTTGGTCTTGCAGGATTAGACACCCTTAATATGTTATTTACATATTGTGTAGAGGGTAAAAAAAAGAAAGTATTAGAGTTTGTTTCAGAATTATCTGAACACGGGGTGTCTGCAGAACAAATTGTTTTTGAGTCTTGTGAATATATTAGAAATATACTTCTTATAAAATCAGGAATTACATCGTCAGATATTTTAGGGTATGCAAAAAGCCAGTATGAAGAAAGTGTATATAAAAACCTGCTTGAATATAAAATAGAATACATGCTGTCTTTGTTACTGACCTGTTATAGAAATTTACGATACACAGTACGACAGAGATTTGAATTAGACTTTACTTTTTCTCAATTATGTAATATACAATCGTATGTTCCACAAGAAGAATTAGTAAGGAGGCTAGAAAAATTAAAAAATAATATTGAAGATACAAATACAGAGTTAACTACAACATCTTTATCTCACAATGCACCACTTAAAGATGTTGTAGAAGAAAATACTTCCAATGTTAATATTCAAAATGCAACAAAAAATAGTATTACCTTGTGGCAAGAGGTTATGATAGAAGTACAACAACAAGATGAACGACTTGCAGTATTATTAGAAAGTGCTACATGTTGCATCAAAAAAAATGTATTTGAATTAGTTTTTTCTGATGAGTTTGTATACTCACGATGTGTGGAGCAAAAAAATGATATATTAAACATGGTGCATGTTGTATGTGGTAATACATGGGATATTTTTTTGACATATAAGGAAAAAGATAAAAAAAGCGAATCTGTACTTGATAATCAAAAAACAGAATTTGACAAACAATTAGAAGTGGCACATGAAGAACATAAAAAAGAAAAGCAGGCAATAAAAGATGTTCCCTCTAGTGTAAGAGATGCTTTAGATGTTTTTGGTGGTGATATAGAAGTAGAAGATAACAAAATCTAAAGATGTACTAAAAATTAAAGTGGGAGTCATAAATGAATAAAATAGAAAAATTAACAGCATTATTATCTCAATTTCCGTGAATAGGAAAAAAATCAGCACTAAGACTTGTCTATTTTTTATTAAAAGAACCAGAAAGTCTATCTCAGCATATTGCACAAGAGTTGTCTACTTTACATGAAGAAATACAACCATGTTTAGAGTGTGGTAATCTTACAGAAATAAATCCTTGTGATATATGTTCTGATGTTAAAAGAAACACACAGCAAATATGTGTTGTCTCTCACACGCAAGATATTATTGCCCTCGAATTAAGCCAATCATTTTTTGGTTTGTATCATGTATTAGGTGGACTTATTTCTCCTCTTGAAGGAATTGGTCCAGAAAATTTGACCATAGGACAATTAAAAGATAGAATAAACAAACGATCTGCTAAAGAAGTTATTCTTGCCACAAGTCCGACCATGGAGGGAGAGACTACAGCACGTTATGTCTACGATGTATGCAAAACTTCTGATGTTGCTTTTACTCGCATAGCTCAAGGCATGCCCATGGGTGGAGATTTTGAATATACCGACAGATACACCATTGCTAAGTCTCTCCATGCACGTGGAAATTTGGTATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02132	RecR_ZnF	RecR, Cys4-zinc finger motif	Motif	Interproscan
PF12169	DNA_pol3_gamma3	DNA polymerase III subunits gamma and tau domain III	Family	Interproscan
PF13177	DNA_pol3_delta2	DNA polymerase III, delta subunit	Domain	Interproscan
PF13662	Toprim_4	Toprim domain	Domain	Interproscan
PF21175	RecR_C	RecR, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000093	Family	DNA recombination protein RecR	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR006171	Domain	TOPRIM domain	Interproscan
IPR008921	Homologous_superfamily	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	Interproscan
IPR012763	Domain	DNA polymerase III, subunit gamma/ tau, N-terminal	Interproscan
IPR015967	Conserved_site	Recombination protein RecR, conserved site	Interproscan
IPR022754	Domain	DNA polymerase III, gamma subunit, domain III	Interproscan
IPR023627	Homologous_superfamily	Recombination protein RecR	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR034137	Domain	RecR, TOPRIM domain	Interproscan
IPR045085	Domain	DNA polymerase III, subunit gamma/tau, helical lid domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30446	RECOMBINATION PROTEIN RECR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0009360	Cellular Component	DNA polymerase III complex	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-