Gene detail

Detailed information of MBSQW58_g15075 in Bathyacmaea lactea Gene info

Gene ID	Annotation	Contig	Start	End	Strand
MBSQW58_g15075	PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER	ctg886	2088	6378	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

MBSQW58_g15075

ATGCCCATGCGGGATAAACCAAATAAACGATCCAATAATATAAATGCCAACAGTAAGCCATGCGCTTTTTTTGCTGCGGTCAAGAAAAGAACTTTCTACGCTGTTAAATCGGAGTGTGTTAAAAATGCTGTTAGTATTCATACATTTTTGGAGAGTCATGTAACTTACCCAAAAGGCAAAAACAATGAGCTGCATGTTTTGTGGCACAATGCTTTTTATGAAATTTCTGACACAATGCCAGAAACACCTCCGACTTTTGTAAGTGCAACAAAGGCTGTAAATATTCCCAGTGTTAGAATAATAATAAATTGTATAAAATCTGATGAAATAATTGCCCAGCTACCACCAAGAATACTCATTATTACTGTAATAAGTCCTAATACTATAATTGTTGTTTTTGTGGGTATTCCAAAAGCACCACTTATAAATACTGCAAGTCCATTAAGCCACAGGGCTGGAAAAATGAGATAACTTGGCACACTTAGTATAGAAAGCAGTTTTTCATTTTTTACTCCAAAACGCATACGAACAGCTTCTACTGGATTTGCAATTTTTAATTGTCTTAGTTTTGGGGCAAAGTAGAGTGCTGCTAGAACAAAAGAGATTGCACTTGCCCAATATACTATGAGTACACTAAATCCGTTAGTGTAAGCACGACCAGCAATTATGGTAAAACTTGATGCCGAAAATTGACTTACAAATGCTGATGTTCCCACCATAAACCATGGTATTTTACCTTGCCATAAAAAAAATCATCAGAACTTTTATTTCTATTTTTAAAATAGAAACCAATGTATAACATAAGAGCAAAATATGAAATAATAAAAATAATGTTAGTCATTAAGATCTCTATAAATAAGTATAATACATATTTTTTTCTTTTATAAAATATATAAACTTGGTATACTGTAGATACATATGGAAAATAAATATGACAATAATAAAAAAATATATGAATCAAAAAAAGTATTAGATAAGGGATTTGTTCGCCTTGTAGATTATATGGGAGATGATGCACGTATAGTACAATCTGCAAGGGTTTCTTATGGTGCCGGTACAAAAACACTTCGACAAGACAGAGGGCTTATTCGATATCTTTTAAGGAATGCACATACATCACCTTTTGAACAAGTTATGTTTACTTTTCATGTTAAAATGCCAATTTTTGTAGCACGGCAATGGGTTAGACACAGAACAGCACGGCTTAATGAAATATCTGCACGTTATTCTATTATGGAAGATGAGTTTTATGTGCCAGAAAAAAGATGACATTAACGCACAAAGTGAAGATAATAAACAAGCACGAAAAAATGATGAACCATTACCTCAGAATGTGCAAGAGAGAACAATTACAAGTATTATCAAAAATCAAAAAGATAGTTATAAAACATATACTAATTTATTAGATGATACAGTGGCACGTGAAATTGCACGCATTACCTTACCAACATCGTTGTATACAGAAATGTACTGGCAGATAGATTTGCATAATCTTTTACACTTTTTACGGCTTCGATTAGATGCCCATGCACAAAAAGAAATTAGGGTGTATGCAGAGACAATGTATGACATTATTAAACAGCTGTGTCCTATGGCTACAGAAGCATTTGAGGACTATGTGTTAGACAAAGTAGAGCTGTACAAAAATGAACAGAAGGTATTATCTAAACTTTTGCAATCTTGTTTGCTGTCTGATGAAGAAATACTGTCTTTTGCAGAAAAAATAGGCATATCTAGTTCAAAAGAACGCACGCTACTTTTACAAAAAATAAAATCAATAAAGGCTGTCTCATAATATTTATTATAGCTATGGTAAAAGATAAAAGTTTGAAAAAAAAATCTATCATCCGCAAAGAAAGAAAAAATTCTTACTCATTTTGAAAACAATGCAAAATGATGTAAAAACAATGCTTACTATTGGTGATTATGTGGCCTTTGTTATTGTATCTACAACATGTATTGTTTTATTTATATTTGTTGTTTTTGGAAATGGCATTTTTAATACTAACATTGGTGGCAAAACAGGTGTAGAAATTATAACAGATAAAAATAAATTTTTATATTCACTTAGTACAGAACGCAATATAGAATTTACAGGTCCTGTTGGAACTACTGTGCTTAGCATTAAAAATAAAAAAGTAGATGTAATAAGCTCTCCTGGACGACAAAAAATTTGTGTAAATGCAGATCCTATTTCAGAACATGGGCAATGGCTTGCCTGTCTTCCTAATAAAATTTTTATTAGAATTATTGGAAAAAAACAAAAGCTGTCCGAACACAATGTAGATGGACTTAGTTTTTAAATTGATGAGAAATTTTGTTTAATTAGTATCATCAATAATTAGATTAGGCACGGCATCTCTGGTTTTATTAAAAAAGTAAGTTTCTTTTATTATGTTTTTAGGACGATTATATATAAAGAGGATAAACATGCTTTTTTTTATAAGTTTTGTTCTTTTTTCTGATAAATTATTATCAATAAAAACACGCTTGGTCTTCCTATTTTATTAACAAAACCCACTACTTGTTTGTCTTTGTAAAAGATAAAGCCAGTCGCATTATTTTTAGAGCGTTTTATGTTTTTTTCAAAAAGACTGCTGTATATGGAGATAGCAGTAATTTTTTGTTTTCCGTGTAAAGAGTTGGGGCTAGAATCCTATAAAGATTCTTATCCAAGGTCGTATCAAACTCCGTATAAAAAGCCTTTATACGATGACTGCTCTGTTTGGAAGAAGAAATTTTTTAATATCATCTTGAAAAGTTTTTGTATGGTGCCAGCTATTGTAAATTGTTTGTCTGTGTTTGAGAAAGTTTTTCCGTAAAATTTATAAGTAAGAGAAGAGTTTTTGAGTATACCTTGTCTTGTAACAGAAAGTTCTGTAATGCCGTCTGTTTTAAGAATGCCGTTTTGTGTATCTTCTGAAAGTACAAATTCTGTTGTAATTTCTAGTGTAAGGCGTCCAGGAAAGTTAACAGTGCCAGTCACAATTTTTTCGGATTGAGAATGAACTGTAAGTTTATAGGCAGGGTAGGCTAAATGATTTATCTTGTACCTTGTGGACCTTGTGCTAAACTATATTTAGTGTTTAATAGGTATTTCAATAAGATTATGAGTGAGTGCAAAAGGGAGTAATTGAGAATCTCTTTTTAAAGTAGCACAGCCGTTTGTTAAAGTGATAATAAATAAAATACATAATAACATGTAAAGAGACTTTGTCTTGAAAAACTTTTTATTCATCATCTATTTATAGTATATATTTTTATTGGCGTTTCATTTATAATAATTCTATGCAGAGAATTATTTTGTATTATTTTTTACAATTTTTGTGGGGTTTGTATATTCTCAAAATATATTACCAGAAGATTTTGCAAACAATAATACAGAAAAAGAGCTCTCTCTTGCTTTTAGAAAGACTGACTACACTTTAAATTTTGCTACAAAAACCTTAATATTTTTGAGAGCACACTTTACACGGCACTTTATAGTGGATTAGTAACAGCAGACCCAAAAAACTTACAACCACGTGTTGGCATAGCTGTGGCATGGCATTCAAATGAAGACAAGACAATTTATACATTTAATATAAGGCGTAATGCAAAATTTTCTGATGGAAGTCCCATCACAGCCGAGGATGTAAAACAGTCGTGGATTTTTTCTATTAAACAAAAAACGCCTTTTTTGTATTTGTTTTCTGTAATAAAAGGAGTAGATGCTTTTACAAACAATAATGCCACTATATCTAATGTGGGCATAGATGTTTTAGGAGATAAAGTATTACAAGTAACTTTAGAGCGGCCAACAAATTATTTTCTAAAAATTATTACACACAGTGCGTTTTCTATTACTTCAAAAAAACAAATAGAAAGTAACAATTGGAGTAGTCCGCGTAATATTATTTATTCTGGTTCTTATGTGGTTGTAGAAGCAGATGACTCACATCTTTTATTGAGAAAAAATCCACATTTTTGGGCTTATGATTCTATTAAAAATGAGAATATTTCTATTGTATTGTACAAAGAGAAAGAAATTGATGTAGTAAGTCAAAAATTTTTAGATGGTGATATTCAATGGACTGATACGTATTCTAAAAACATGGCTGAAAAGGTTGATAAAAAACATATTTTTGATTTTCCGCTTTTTGGAACGAACTATTTGTTTTTTAAAACTCAAAAAAAACCATGGGATAATCCTGATGTGAGACGTGCTATTAGATTATTATTGCCATTGGACCAAATTTTAAAAAAATATTATGTTTTTCCTGCTAAAAATTTGGTTAGAGAAATACTGTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00496	SBP_bac_5	Bacterial extracellular solute-binding proteins, family 5 Middle	Domain	Interproscan
PF02511	Thy1	Thymidylate synthase complementing protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000914	Domain	Solute-binding protein family 5 domain	Interproscan
IPR003669	Family	Thymidylate synthase ThyX	Interproscan
IPR023765	Conserved_site	Solute-binding protein family 5, conserved site	Interproscan
IPR036098	Homologous_superfamily	Thymidylate synthase ThyX superfamily	Interproscan
IPR039424	Family	Solute-binding protein family 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30290	PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006231	Biological Process	dTMP biosynthetic process	Interproscan
GO:0015833	Biological Process	peptide transport	Interproscan
GO:0030288	Cellular Component	outer membrane-bounded periplasmic space	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0050797	Molecular Function	thymidylate synthase (FAD) activity	Interproscan
GO:1904680	Molecular Function	peptide transmembrane transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-