Gene detail

Detailed information of MBSQW58_g14850 in Bathyacmaea lactea Gene info

Gene ID	Annotation	Contig	Start	End	Strand
MBSQW58_g14850	D-XYLOSE-BINDING PERIPLASMIC PROTEIN	ctg826	59886	62512	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

MBSQW58_g14850

ATGATGATGGTGATTATTACAAGAGGTATTGATTTGTCTATTGGAGCAACTTTAGCTTTAGTTGGAATGAGTGTTGCTCTTATTGTATCTCGTTATCCAAATATTCCCCCATCTCTGGCAATTTTTATGGGTGTTTTGCTTGGAACATTATGTGGTTCTATTGTAGGTTTATTAGTTTCAAAAGGAAACATATTACCAATTATTGCCACCATAGGTATGATGAATGTTTTTAGAGGTGTTACTTTTATGGTAAGTAAGGGAAAATGGGTTAGTGCATATCAAATGCCCGTGTCTTTCAAACAAATTGCCACACAGAAAATTTTTGGCATTAACAAACTGATAGTTTTTGCAATTGTTGTAAATATAATTTTTTATTATATTCTTATGCACACAAAACTAGGTCGGCAAATTTATGCTGTTGGAAGTAGTCCCCGTTCTGCAAAAATAAGTGGTATTAATCTTAATAAAATATTACTCTTGGTATACACAATTATGGGTGCTCTTGCAGGATTGTCTGGTGTACTTTGGGTATCTAAATTTGCATCAGCACAAGGAGATACCGCAACAGGGTACGAGTTAAGTGTTATTGTTGCTTGTGTACTTGGTGGAGTAAGTATTGCTAAAAGTTGGGAAAATATCGAGTGTATTGATGGGAACCTTACTCCTTGGCATATTAAACAATGCTTTGCCACTAGTAAATGTTTCTCCTTTTTGGCAGAATTTAATTCAAGGACTTATAATTCTTTCTGCTGTTATAGTAAATGTTTTAATAAAAAGAAAGATGGATTTTAATTACTTAAAACGGAGAAAAATCTAACATGGCACAGATAAAACTTATAAATACACAAACAATTAATTTTAAAAAAATATTTTTTCAATGGGAATGGATGTTGTTGGTGATTTTTGGAATAGTAACAATTATTAATTCGAGTATTTCTCCATACTATTTTGATTTTGAATTATTAATTGCCGCAACCGCAACTTTTTGTAGACAAGGCGATAATTGTTCTTCCAATGGTGTTTATTATTCTATTAGGTGAAATTGATATTTCTGTTGCGTCTATTCTTGTGTTATCTTCTGTCATTATGGCTACAAGTTATAATATGGGGTTGCCAATGCCCATAGCTATGTTTTTGTGTGTGTTTATTTCAACAACATGTGGATATATCAATGGCTATCTTGTTACAAGATTTAAAGAATTATCATCAGTAATTATTACTTTGTCAACCATGATTATATATAGAGGAATTGCTTATGTTATTTTAGAAGATAAGGCTTCGGGTAAATTTCCTCAGTGGTATAATTTTTTAGGCTGGGGAAGTTTTGGAATTGTACCATTTATATTAATTGTTTTTGTTTTTTTTGCAATTATTTTTTATACAGTACTCAACAAAACTGTGTTTGGAAGAAGAATTTATGCAATAGGAAGTAATCAAACGGCTAGTCTATATTCTGGAATTAAAGTAAAAAATATAAAAACTTTTGTATTTATTCTCACTGGTTTTATGACAGGAATTGCAGCCTTATTTCTTACATCAAGACTTGGTAGCACGCGTCCAAATGTTGCTTTTCTGAGGGTACGAGCTTGATGTAATTGCAATGGTGGTTTTAGGTGGAATTAGTACAGCAGGTGGAAAGGGTAAAATGTTAGGGGTAATTATATCGATATTTTTGATTGGATATTTGCGTTATGGACTTGGACTGGTTAATATTCAATCTCAAATTTTGCTAGTTATAGTAGGATCACTGCTAATTTTTTCTGTTTTGGTATCAAATGTCATGAACACAGTAAATATATCTAAATCAAGTAAAAAACAAAGACTTACAAAAATTTAAAAATAAAATGTTACAGGAGGATGTATTATGAAATAACAAAGAGCAAAATAAAAAGAGAGAGTAAAAAGAACAATAACAACAAAAAACAAAGGAGAAAGCATATGAAAAAAATATTTTAATATTATTAATCACATTTGTATTTATTATTGGATGTGCAAAAGAAGCAACAGAAGAAAAATTTGCAATTATTGTAAAAAACACAGGTAACCCATACAATGAAAAACAAATTGAAGGTTTTGTAACAGCAGTAGAAGAATTTGGTGGAAAAGCAATTGTAAAAGCACCAGAACAACCAACTGCAGAAATACAAATTCAAATGGTTGAAGAACTTATTGTACAAAAAGTAAAAGCCATTGCAATTGCAGGTAACGATAGAGACGCATTACAACCAGTTTTACAAAAAGCAATGTCAAGTGGAATTAAAATTTTATCTTTAGATTCTGCTGTAAATGGAGAAAGTCGTCTTGTTCATGTAAATCAAGCGGACTCCGAACTGATAGGGCGAACGCTAATACGAGGGCTTTTTGAAATGATTGGAGGAAGTGGAGAGTTTGCAATATTAAGTGCAACTTCTCAAGCAAGCAACCAAAACACATGGATAAGGTGGATGAAAAAAGAATTAGAAGAGTCAAAATATTCTAATATTAAACTTGTAAAAACTGCATATGGTGATGATTTACGAGATAAAAGTGTTTCCGAAACAGAAGCCTTGTTAAAATCATTCCCAAACCTTAAAGCAATTGTTGCACCAACTTCTGTTGGAATTAGCAATTTGCAGGAAAAGTTTTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02653	BPD_transp_2	Branched-chain amino acid transport system / permease component	Family	Interproscan
PF13407	Peripla_BP_4	Periplasmic binding protein domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001851	Family	ABC transporter, permease	Interproscan
IPR025997	Domain	Periplasmic binding protein	Interproscan
IPR028082	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR050555	Family	Bacterial Solute-Binding Protein 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30036	D-XYLOSE-BINDING PERIPLASMIC PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0030246	Molecular Function	carbohydrate binding	Interproscan
GO:0030288	Cellular Component	outer membrane-bounded periplasmic space	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-