Gene detail

Detailed information of MBSQW58_g14662 in Bathyacmaea lactea Gene info

Gene ID	Annotation	Contig	Start	End	Strand
MBSQW58_g14662	THIAMINE-BINDING PERIPLASMIC PROTEIN-RELATED	ctg785	72214	77342	-

Gene Structure

More details in Jbrowse Sequence

CDS

MBSQW58_g14662

Transcript

MBSQW58_g14662

ATGAGTTACAAAGGACTTCAATTTGTAAGTACGCGTGATGTAAACAATGGTAATTTTTTAGATTTTTCTGATGCAGTGTTACAAGGTTTGGCTCCAGATGGAGGATTATATTATCCCACTGCAGAGAGTATAAAAAGAACATCAACTGCATTTTTAGATATGTGTAACACCTTAGCACCTGATATATCTTTTGTAGATCTTGCTACAAAAATAACTGCAGTTTTATTTGAAAATGAGTTTGATCAAACTACTGCTAAAATTATTACACATAATGCTTTTGGAAATGTAGAAGAGTTTTCTAAAGATCAAAAAGGCTTTGAGCCTTGTCTTAGAGAATTAGATGATTCGCTTGCTTTATTAGAGTTATTTCATGGTCCGTCGTGTGCATTTAAAGACTTTGGAGCAAGTTATCTTGCTGCAATTATGGAGCATAAATTAAAAAAAGAAAATAAAAAAATTACAATATTGACTGCAACAAGTGGAGATACAGGAAGTGCTGTTGCACAGGCATTTTTAAACAAAAAAAATATTACTGTAGTTATTTTGTATCCGTCTAAACGGATAAGCCCTTTACAAGAAAAACAGCTTACAAGTCTTTCTAACAATATAATTGCTTTAGAAGTTAAAGGCAATTTTGATGATTGTCAGCATTTAGTAAAACAAGCATTTTCTGATGAAGACATAAATTTTAAGTACAATCTTACGTCTGCAAATAGCATAAACATTGGAAGGCTTATTCCTCAATCTTTTTATATGTGTATGCATGGAATCAATTAAAAGCGAGTAATGTTCCATATATTTTTTTGTACCCAAGTGGTAATTTTGGAAATTTAAGTGCAGGACTTCTAACATGGCAGTTAGGTATGCAAGTCAATAATTTTATTGAAAAAGAACTAATAAAACAATGTTATTCCTTTATATTTACAAAATAATGTATATTCACCAAAAACATCTGTATCAACACATGCAAATGCCATGGATGTGGGGAACCCTAGTAACTTTGAACGAATGCAATATATGTTTAAAAAAATATCGACAGATAAAAAAAATATTGTCTGATGTTGTATATGGAGAATGGGCAGATGACAAAGAAATTTTGTTTTACAATGAATGATGTTCAAAAAAAATACCAATATTATGTTTGCCCACACACTGCGGTAGGAATAAGTTGTGCAAATAAAATACTCTCACATCAGCAACATTATAAAAAAGCTATAGTGCTTGCCACTGCCCATGCTGGAAAATTTTATGAAGTTGTAAAACTAGCCTGTGATGTTGTTCCTGTATTTGAGAAATTAGTACCAAAAAGACTTTCTGTATTTTTACATAAAGAAAAACATGTACATGTCATTTCTTTAAACTATTCTGACTTAAAAGAAATTTTGCAAACTCTAAATCTAACTTAGAGTCAATATCTAGGGCGTGCTCTTTAGAAAGCACATAGCCATATGTGTTCATGTTAAAGGGATTTTGTTTTTAATGTACAGGCGAACATTAGCTAAAAAAAATTGCTCCACTTATTGTATAAAATTTTTCATGTTTTGTCGTTGAGTATTTTGAAATTGAGGGTGAATAAATTTTTTAGAGAAAGATTATTTGCAAGTTCACCACCAGTGTATGCAGGATGTTTTGTCTCATAAATACTTATTACGGTTTCTGCATTTTTTTCATCAAATAACTGAAAGGCAGATTGTATATCATTTTTATCTCGCAGTGGGCAGGTTGCTTGCAAGAGTGCAAAATTATTATAATGTTTTCCTAAATCTTCTAATGTAGTAAGTGCATGAATGCTGACATCATTTAGAGGAACATTATCCTTGCTTAGTATTGAAGGTCGTATAAATGGGACTGTAAAGCACCATAGTTTTTGGCTATTTCTGCATATTCAAGACTATCTGTAGATACAATAACATCTGTAAATATTTTACTTTCTAAAGTCGCTTTAATAGTATGTGCAATGAGAGGAATATTATTGACAGAGATTATGTTTTTATGAAGTAACTCTTTTGAAGCACTTCTTGCAGGTATAATGGCTACATTTGACATATCGTACCCAAGTggattcgaaccaccgaccttcagaaaccgcaatctgatgctctatccagctgagctatgggtacCACGGAGAAAGAGGGATTCGAACCCTCGGTGCCCGTAAAGGCACAACTCCTTAGCAGGGAGCCCGATTCAACCACTCTCGCATTTCTCCTTTCCGTTAAATATAAGTATAGATAAAAAGAGCTTTGTATTCAAGTCCTAGATAAAAGTACTATATTTCATAGCAGTAAAATAATATTTTGGTATAATTTTTACAAAAGAAGTGTGTACAGTTGAATGTTTTTTAGAAAAAATGTATAATGTGTAATAGTTGTACTTAACAGGATAATTATTTGATGATGGTATGGTAGTGCACAAAAAAAAATAAAGGAGACAGATATGAAAAAAAtattgttattattattaacattaacattagttttagttgtaattGCTTGTAAAAAAGAGAATTCGAAAAAAACTGAAGGAAGTTTGACATTTTACGCAGGCTTACAAGAAGACCATGCGGCTATGATTGCTCAAAAATTTGAGGAAGAAACAGGTATTAAAACAAGTTTTGTAAGAATGAGTAGTGGAGAAGTTTTAGCAAGGCTCAAAGCAGAAAGAAACAATATGTCAGCTTCAGTATGGTATGGTGGACCTGTTGATGCTTTTGTGGCAGCAGCAGATGTAGATTTAATAGAACCTTACATATCTCCAGAAGCAGTAAACATTAAAGAAAGAACAAAAAGATCCAAAAGGTTTTTGGACAGGAATTTATGTAGGATATTTAGGCTTTGTTGGAAACCAAAAAATATTAAAAGAAAAAGGACTAGAAATGCCAACATCATGGGCAGACTTATTAAAACCAGGATATAAAGGTGAAATAGTTGTAGCACATCCAGGTTCATCAGGTACAGCATATACAATGTTGGCTACTCTTGTTCAACTTATGGGTGAAGATGAGGCTATGGAATACTTGAAAAAATTTAATACCCAAGTAAGGCAATATACAAAATCAGGTACAGCTCCAGGACGAATGGCAGGACAAGGTGAAACAACCGTAGGAATAACATTTTTACATGATGCAATTAAATATAAAAAAGAAGGATATAGTGATATTATTATATCTGCACCGTCTGAAGGAACAGGTTATGAAATTGGGGGTGTTGCTCTTTTGAAGAATGGACCAGACCAAGAATCTGGAAAACAATTTATCGATTGGGTATTAACAAAAAGAGTTCAAGAATTGGGCAAAACAGTAGGTTCTTTTCAATTTTTAACAAATAAAGATGCTTCTCCACCTGCAGAAGCTGACCCAATAAAAGATACAAAATTAATTGAGTATGATTTTGATTGGGCTGGAAAAAATCGAGTCAGATTAGTTGAAAGGTTTAGTGTAGAAACAAGCACAACCGCACCTAAAAAATAAGAGATAAATCTCTCAATAAGTAAAAGTTATTGAGAGATTTTTTTATTTCTTTTCTCTAGTAATAAAAAAAGAATGAATGATTTTAAATTAAAAATAAATCAAGAACTCAAAAATATAAAAAAACTGACACATGACCCAATGCTCTTTTTTACCATACTATTTTCATTAGTGGTGGTGTCTTTTTTTGTTTTGGTTCCATTATATAATGTCTTAAAAGAAAGTTTTACCTTTAAAAATTCTTTTCGATTTGAAAATTATAAAAATGCATTTGGAAGAAGTGGAAATTTATTGATAATTTTTAATACATTAAAATTAGGCTTTGTAACAGCAACACTGTCTTTAATTATTGGATTTTTCTTTGCATATACAACTTCATATATCAAAATTAAAGGGAAAAGAATTTTTGATTTTATAGCAATGTTGCCTATTATATCACCTCCATTTGTTGTAGCTTTATCAGCAATATTATTGTTTGGAAGGCAGGGACTTATAACACGAGGACTTTTAGGCATTACAGATTTTGAAATATATGGATTTCACGGATTAGTATTGGTTCAAGTATTAAGTTTTTTTCCCATAGCTTATCTTATGCTTGTCGGATTATTACAAGGAATAGACCCATCTGTAGAAGAAGCATCAAGAGATTTAGGTGCGTCCAAGCTAAAAGTATTTACAAGTGTTACATTCCCACTTGTTATTCGAGGATATGCAAATGCATTTTGCTTGTGTTTATTCAATCAATTGCCGATTTTGCAAATCCAGTGGTAATTGGAGGAAACTTCACTACAATTTCTGTGAAAATTTACCAAGAAGGAATAGGAAATTTTCAACTAGGCATAGCAACAGCTCTTGCTATGATATTACTTACAATGTCTATTTCAATGTTTGTACTCCAAAAATTTTATGTTAGCAAAAATCTTATATAACAGTAACAGGAAAAATCTCTCGATCAAGAGAATTAATAAAGATAAAAAATAACAAGACCAGTGTTTGTTGTTCTTATAACACTTACAGCCTTTGTTATTTTAATGTATGTACTTATTCCTATAGGTTCATTTGTAAAATTGTGGGGAATAAATAACACACCAACTTTAGATCATTATAAATATATTTTAAGTATGGATTTGACCCCATAAAACAAACAACAATACTTGCAACAATGGCAACATTAATAACTGGTTTTTTTGCAATGATTATTGCATTTTAATTGTCAGGAAAAATTTATAGGAAAAACATTTATAAATTTACAACAATTATGGCATTAGCTATTCCTGGAACAATTATTGGTTTAGGTTATGTAATTAGTTATAACATAAGCTATAAAATACCTTTTACAAATATTACACTTATTCCACCACTTACAGGAACAGCACTTATTATTATTATTGCCTTTATTATAAGAAGTTTGCCAATGGGAGTTCGCAGTGGTATGAGTTCTTTACAACAAATTGACCCTTCCATAGAAGAGGCTGCCAATGTCTTAGGAGCTTCAAGCGCACGGGTGTTTTTTAGTGTTACTATTCCCATGATAAAAGAAGCATTTTTTAGTGGTCTCATTTATTCTTTTGCAAGAAGCATGACTTTAGTAAGTACCATAATCTTTTTTAATATCAGCAAAATGGAAATTGTTAACACCTGCTGTTATGAACAATATTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00291	PALP	Pyridoxal-phosphate dependent enzyme	Family	Interproscan
PF00528	BPD_transp_1	Binding-protein-dependent transport system inner membrane component	Family	Interproscan
PF13343	SBP_bac_6	Bacterial extracellular solute-binding protein	Family	Interproscan
PF14821	Thr_synth_N	Threonine synthase N terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000515	Domain	ABC transporter type 1, transmembrane domain MetI-like	Interproscan
IPR000634	Binding_site	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	Interproscan
IPR001926	Domain	Tryptophan synthase beta chain-like, PALP domain	Interproscan
IPR029144	Domain	Threonine synthase, N-terminal	Interproscan
IPR035906	Homologous_superfamily	MetI-like superfamily	Interproscan
IPR036052	Homologous_superfamily	Tryptophan synthase beta chain-like, PALP domain superfamily	Interproscan
IPR037158	Homologous_superfamily	Threonine synthase, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30006	THIAMINE-BINDING PERIPLASMIC PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006520	Biological Process	amino acid metabolic process	Interproscan
GO:0006810	Biological Process	transport	Interproscan
GO:0015888	Biological Process	thiamine transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0030288	Cellular Component	outer membrane-bounded periplasmic space	Interproscan
GO:0030975	Molecular Function	thiamine binding	Interproscan
GO:0030976	Molecular Function	thiamine pyrophosphate binding	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-