Gene detail

Detailed information of MBSQW58_g14316 in Bathyacmaea lactea Gene info

Gene ID	Annotation	Contig	Start	End	Strand
MBSQW58_g14316	CHORISMATE SYNTHASE	ctg721	175495	177740	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

MBSQW58_g14316

ATGTCAATAGGATTTTTTATAGCACCATTGGTTTTAGGTATTGCAAGTGCAGTTTTTGCAGCACTTATTAGTATTACAGATAAGATTGTAAACAATTATGGAACATGTGGTATAAATATTAATAATGGAAAAAAAGAACTTTCTATAGAGGGTGGAGCTCCATTGCTTTTTACACTTTCTGAGGAAAAAATATATGTGCCATCTGCCTGTGGTGGAAAAGGAAGTTGTGGAGCATGTAAAGTCATTATAACTAGTGATGTAGGTCCTGTTCTTCCAACAGAGCTTCCATATCTTACAGACGAAGAATTAAAAGAGAAAACACGTCTTGCCTGTCAGGTTAAGGTAAAAAAAGATATAGAAATTAGCATTCCCGAAGAAATTTTTAACGTGAAAAAACTTAACGCTACTGTAAAATCTATTAAAGATGTTACATACGATATTAAAAGTTCGATTTTTCTTCCAGACGAAATTGAATTTAAGTGGGCAATATCTTCAATTAGAAACACCAAAGTACAAACGTGGAAAGAAAAAAGAAGATTCTACAATGAGAGCATATTCTCTCTCATCAGCTACACAAGATAAAAACGAGGCAGAGATGTTAATTCGCCTTGTCCCAGATGGAATTGTTACAACCTATGCACATACTGTTTTAAAAGAAGGTCAAAAGATAAATGTTATTGGTCCTTTTGGAGATTTTTATGTGCGTGATACAGATGCTACTATGGTATGTGTTGCAGGTGGTAGTGGAATGGCTCCTTTTAAGTCAATTTTTAATACATTGCTTAAAGATGATAATTTTGGAAAAAGAGAAATGTGGTACTTTTTTGGAGCGCGTGCTGTGAAAGATTTGTATTATCAAGAATGGTTGTATGATTTAGATAAAAAATATGAAAAATTTCATTTTGTTCCAGCACTTTCTGATCCTGATCCCAAAGATAATTGGAAGGGACCTACTGGACTTATTACAGAAATACTAGATGGATACCTCAAAAAAGAAATTGATGTCAACAAAGTACGAGAAGGATATCTTTGTGGAAGTCCTGGAATGTTAGATGCATGTATGGACGTTATGAAAGATAAAAACGGCATGGTGGAAGAAAAAATTTATTTTGATAAAATTTGCATAAACCTAATAGTTTTTACTATAAATATGGCTGTGCTTTTTTTAAATGCACAGCTTTTATAATCTGATAGATTACTTACAATAATGGGTGGGTTAGAGATATGGCAGGAAGTAGCTTTGGCACTAATTTTAAAATAACAACATTTGGAGAATCTCACACGGAAAGGCTGTAGGAGTTGTTGTAGATGGAGTAACGCCAGGTTTCCAGAAATAGATGAGGAATATGTACAAAAAGAGCTTAATAGACGTAAACCTGGACAGTCAGATATATCTACTCCTCGAGGAGGTCTGATGTTTATAGTATCTGGTATGTTTGAAGGAAAAACCACAGGAACTCCGCTTACCATGATTTTATACAATAAAGATGCTGACCCTAGTGCTTATGATGAGATTAAACATATGTATAGACCAGGGCATGCTGATTATTCGTATATCAAAAAATATGGCTTTAGAGATTGGCGAGGCAGTGGAAGAGCTAGTGGGAGAGAAACTGCTGGGCGAGTTGCAGCAGGTGCGGTTGCAAAAAAAATGTTAGAAGCACGTGGAGTAAAAATAACTGGCATTTACCCGTGCTGCAGGTGGAATAGAGGGAAAAAATGTAGATTTTTCTGTCATAGAACAAAATCCAATGCGTGCTGCAGATATTGATGCAGCAAAACGTATGATGCAAAAAGGTATTAAATTAAAAGCAGAAAATAATAGCATGGGTGGCATTATTGAGTGTCATATTATGGGAGTACAAGCAGGACTTGGAGAACCTGTCTTTAATAAGCTAGAAGCGGTACTTGCTCATGCAGTTATGTCAATTGGTGCAATTAAAGGATTTGAAGTTGGAAAGGGATTTTCTGTTGCTAATAAAACTGGATTAGAAAATAATGATGAAATGAATAAAGATGGATTTAAAAGTAACAATGCTGGAGGAATACTTGGTGGCATTTCTACTGGTCAGCCAATAATTATACGCGCTGCAGTAAAACCAGTGGCTTCTATTTCTGCAGAACAACAAACTCGCAATGAAAACAATGAAGTTGTTACTATAAAAACAGAGGCGCAGACGATGTGTGCATCTGCCCTCGAATTGGTTCCACGTGAATTGAAGCAATGTGCCTTGCCCTTGTCATAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00111	Fer2	2Fe-2S iron-sulfur cluster binding domain	Domain	Interproscan
PF00175	NAD_binding_1	Oxidoreductase NAD-binding domain	Domain	Interproscan
PF00970	FAD_binding_6	Oxidoreductase FAD-binding domain	Domain	Interproscan
PF01264	Chorismate_synt	Chorismate synthase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000453	Family	Chorismate synthase	Interproscan
IPR001041	Domain	2Fe-2S ferredoxin-type iron-sulfur binding domain	Interproscan
IPR001433	Domain	Oxidoreductase FAD/NAD(P)-binding	Interproscan
IPR001709	Domain	Flavoprotein pyridine nucleotide cytochrome reductase	Interproscan
IPR008333	Domain	Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain	Interproscan
IPR012675	Homologous_superfamily	Beta-grasp domain superfamily	Interproscan
IPR017927	Domain	FAD-binding domain, ferredoxin reductase-type	Interproscan
IPR017938	Homologous_superfamily	Riboflavin synthase-like beta-barrel	Interproscan
IPR035904	Homologous_superfamily	Chorismate synthase AroC superfamily	Interproscan
IPR036010	Homologous_superfamily	2Fe-2S ferredoxin-like superfamily	Interproscan
IPR039261	Homologous_superfamily	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21085	CHORISMATE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004107	Molecular Function	chorismate synthase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0009073	Biological Process	aromatic amino acid family biosynthetic process	Interproscan
GO:0009423	Biological Process	chorismate biosynthetic process	Interproscan
GO:0010181	Molecular Function	FMN binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-