Gene detail

Detailed information of MBSQW58_g14119 in Bathyacmaea lactea Gene info

Gene ID	Annotation	Contig	Start	End	Strand
MBSQW58_g14119	TRANSLATION INITIATION FACTOR IF-2-RELATED	ctg700	131220	135486	+

Gene Structure

More details in Jbrowse Sequence

CDS

MBSQW58_g14119

ATGAATACAAGTAAATATGGTAGCAGAGCATTTTTTGGTTCAATTGCAAAAGGCTTTAATGCTATTACAATTGATGATGCTAGTGCTAAGACTATTAGAAAGAATACGCTTAAATCACAACCTTCATGTATGGATAATAATTTTGGAATACCACTAGTTATAGAATTTGCTGGTGGTTTGGGAAACCAAATGTTTCAATTTGTGTTTGGTAAAATGCTTCTTGCTTCATTAAGAGTAATGGGCATGTCATCTTATATTTTGTATTATGATGCAAGTGCAGTGATGCGTGATGTAAAACGAAGTGATGATGCTACATGGCTTAGAACTAATTTTATAAGTCAGATTATAAGAAGAGTGAAAAATTTTCCTTCAACTATTATTTCTTCTGGAGAAAAAAAATTATTAGTGATTGGTGGTGGTAATGTAGGTGCTTCTACGGTACATTATATTGCAAAGAGAATTTCCTCTGAACGTTTTAATGGAGAAATTGTTTTATTAGATGTTGTCCCTCAATTGGCAGAACAAAAAGCACTAGATTTGAACTGTGCTAAAACCTGTTATGATTATAAAGTAAAATTTATAGGTGGAACAAATTTTGCCTTACTAAAAGATGCTGATGTGGTTGTGCATACAGCGGAAAAAATAAATGTTGCAGCTTCACAAGTACAAACTATGGTATTAGGTGGACACGGAGATACAATGGTGCCAATTACACAATATTCTGCTATTGGTGGATTAGAAGCTACAGAACTTATTGCAAAAAAAGACTTACTTGCTATGGAAAAACGGACTCGAACTGGTGGTGGGGAGATTGTAAAATATCTTAAAACTGGTAGTGCATATTATGCTCCAGCGTCATCTGCTGCTGATATGGTAGAAGCAATTATTTCAGGAGAGAGACGGGTTATTCCTGCATCTGTGTATTTACAAGGTGAGTATGGTGTAAAAAATCTTTTTCTAGGTGTTCCTACAATTTTAGGTCCAAAAGGATTAGAAAAAGTCATTGAGGTTAAACTTACACCCATACAAAAAAAAGCACTTTCTGATTCTGTAAAAATGGTAAGAACTGAACAAAGATTTTTGGATATAATAGTTAAACTCATGACTGAAAAAAAAACTGTTAGTGAAGATAACGAAAATAACAAAGGAAGAACTGTCCTTAAAAGAGTAAAACTCATTAAAAAACCTTCATCGAAATCGACTGAAGAAAGTGTTAAATCTACAACTGCATCTGGAACGACAGTAGAGCGTCCTAAAATTAAATTTAAGCTTAAAAAAACCCAAAAATCAAAGGTTACGGTGTTAAAAATAGAAAAGCCTAAGCCTAAGCCGAGGATATTATCAAGGgtttcaccgaaagttttaccgaaagtttcaTCGGGAATTTTATCAAAAGATACATCAAGAGACAAAGCAACAGCTAGTCAATCTCAAAGTGTTCATAAAAAATTTAACACTGGTAAAGATTTTAGCAAAAGCAGTGATGGAAATAAAAAATTTTCTAGTAGTAGAACCCATGGGAATGTAAAACAACAAGGAGATGGACGTGAGCCTAGGCCTAGCGCTTCAAAGAGACAATTTAAAAGCAAGGCTTCATCACTGCCAATAACTCCGACACCTACGGAGCATTCTAAAAAGCGAAGTTTTAAGCCTGCAAGAAAAAGACAGTTTGTTAACAGAAAATCAAGAGAAATAGAAAAGCAACTTTATGTCAAAAACAAAACATCAGTTGTTCAACAAACAAACCCAGTTCCTAAATCTATTTCCATTATGGAAAATATTACCATTGCAGAACTTGCTAAAAAGATGAACTTAAAGGCATCTCAAATATTATCAAAACTTATGAATATGGGAGTTATGGTTAGTGTAAACTCCTCTATAGATGCTGATACAGTGCAATTGTTGGCATCAGAATATTCTTGTGAGGTAAAAATTGTATCTCTATACGACCAGACCACAATAGAAACACCGGATGATTTAGAAGCAGATTTACTTCCGCGAGCACCTGTTGTTACGGTAATGGGGCATGTAGACCATGGTAAAACCACTTTACTTGATACCATTAGAAAGACTAGTGTTGTTACTGGTGAACAAGGAAATATCACTCAGCATATTGGAGCTTATCAAACACATATTAGTGGAAGAGATATTACTTTTTAG

Transcript

MBSQW58_g14119

ATGAATACAAGTAAATATGGTAGCAGAGCATTTTTTGGTTCAATTGCAAAAGGCTTTAATGCTATTACAATTGATGATGCTAGTGCTAAGACTATTAGAAAGAATACGCTTAAATCACAACCTTCATGTGCCTTTTAATTGATGTTTGCTATAAAATACTTTTTACAAATGAAACATAATTGAACATAATTCATTTCTGCTATAATAATAGAAGGTATGGATAATAATTTTGGAATACCACTAGTTATAGAATTTGCTGGTGGTTTGGGAAACCAAATGTTTCAATTTGTGTTTGGTAAAATGCTTCTTGCTTCATTAAGAGTAATGGGCATGTCATCTTATATTTTGTATTATGATGCAAGTGCAGTGATGCGTGATGTAAAACGAAGGTTTATATTACCAAAATGTTTTACAGAAAAACAAAATTGTTTTATTACATCTCGAAAACAGCTTTTTGAGGTATTGGGAGAAAGAGTAGGAACCTCTCTTTCTCTGTTAGAAAAAAGTAGTTAATACTGTTAAGCCTTATAATCGTGGTGAAAAAGATACAGCATCTTCTTATATACTTATACATGAAAAACAATTTATAAAAACGCCTTCTAATGTATTGGGACGTGAGATTGCACAGCAATTACTTAATAACGAAAAACCTGTATTTATCCGTGGATACTGGCAACGTGCAGATTTTGCACAAAACTACTTACAAAAAAATCCTTATCTTTTGAACCCAAAGAGAAAGTATCGAATATAAAATTATTAAGAAAAAATAAACAAACCATGGCAGTAGTGTTTCTATACATATTAGAAGAAGTGATTATTTAGATGAAGAAATTCAACAAGAGTTTCCTTGTGTTCTATAGAATATTATACAGATGCTGTTATCTTATATAATGTCACATTACCCAAAGGCACATTTTTTTCTTTTTAGTGATGATGCTACATGGCTTAGAACTAATTTTATAAGTCAGATTATAAGAAGAGTGAAAAATTTTCCTTCAACTATTATTTCTTCTGGAGAAAAAAAATTATTAGGTATGCTTAATAAAATACAAGATTGGGAAGAATTATTTTTAATGAATGAATGTATTCACCACATACTAGCTAATAGTACATTTAGTTGGTGGGGAGCGGGAATATTAAGTCTAAAGCGTGTTGCTAGTGGAAAAATTATTGCACCTAGCTTATGGAATATAGATACGAATCTAAGTTCTCACATACTGGATAAAAATTGGATATTAGTAGATAAATAATGTATTTATGTACAAACATTTTGTGATGTTTTTGGTATAATATAAGGCATGAGTACTACTATTTCAATTTTGGGATGTGGACGTACAGGTGTACAAACAGCTGTATCGCTTCTAGATCAATTTTCTGGGCAAATAATAATTTATGATGCTGATTATTCATACGCTCAAGGTATGAGTCTTGATTGTATGCAGGCTGACATCTGTGAGAAGACTCTGAGGAAATATGTATGCTTCAAAGAATATGGCACATCTCAATAAGGGCAGTGTATTAATTATTTGTGAACAACGAGATGAACTTTTGTCAAAGGAATGGCAAAAGTTTACTAAAAACTTTTTGGGACTTTGCATTTATGCAGGACAAGATATTAAAACATTTAAAACCTTTGCATCAAAACTACACCTCAAAAGGAAAAAAATCTATATTTTGCTGTTCATGGCATTGTAGATGCAGGATTACTTGCATCCAGGCTGCGCAACCAACAAAATTGATGTATCTATAAAAGATGTATCTGCATTAGTTCGCGGTGGCACTGGTGCAAATATGCAAAGCAAAGAGTCTTGGCTTAGGGCAGGTGGCATACCAGTTAACGAAATTAAATCTGGTACATTTACAGCATCACTTGCTATTGCAAAAAAAACACACACTCAATTAAAGAAAAAACCGTGGGGTTTATACTATGCCTTTGCATCAGGCTAGCACGCTAAAGAGCAAGCTTGTGGGCAATTAGTGCTAAGAATGGACTTTTGAGTGTGAGTACAGATAAAGGGAGTATTCCTGCTATTATTAGCAAAAACGGATATGTAGATTACAAAAGTGTAAAAGGAAAATAAGGAAAAAACATGAATAAACAAAGTATAAAAATTGCAGTGATTGGTGGTGGTAATGTAGGTGCTTCTACGGTACATTATATTGCAAAGAGAATTTCCTCTGAACGTTTTAATGGAGAAATTGTTTTATTAGATGTTGTCCCTCAATTGGCAGAACAAAAAGCACTAGATTTGAACTGTGCTAAAACCTGTTATGATTATAAAGTAAAATTTATAGGTGGAACAAATTTTGCCTTACTAAAAGATGCTGATGTGGTTGTGCATACAGCGGGTATTGCACGCAAACCGGGGAATGGATAGAATGGACTTGCTTAAAACAAATGTTTCAATTGCAAGAGTGTTTCAAAAAACATTGTAAAATACGCCTCTAAGACAATTCTCATTGTTGTGGCAAATCCTCTTGATGTTATTGCAACAGTATGTTACAAGGAAACTAAATTCCCAAAAAATAGAGTTATAGGCATGGCAGGGGTATTAGACAGTGCTCGCTATCGTTGTTTTATATCAGAAAAAATAAATGTTGCAGCTTCACAAGTACAAACTATGGTATTAGGTGGACACGGAGATACAATGGTGCCAATTACACAATATTCTGCTATTGGTGGATTAGAAGCTACAGAACTTATTGCAAAAAAAGACTTACTTGCTATGGAAAAACGGACTCGAACTGGTGGTGGGGAGATTGTAAAATATCTTAAAACTGGTAGTGCATATTATGCTCCAGCGTCATCTGCTGCTGATATGGTAGAAGCAATTATTTCAGGAGAGAGACGGGTTATTCCTGCATCTGTGTATTTACAAGGTGAGTATGGTGTAAAAAATCTTTTTCTAGGTGTTCCTACAATTTTAGGTCCAAAAGGATTAGAAAAAGTCATTGAGGTTAAACTTACACCCATACAAAAAAAAGCACTTTCTGATTCTGTAAAAATGGTAAGAACTGGTATAGATGCCATTAAAGGAATATAAGCAAGAGATATAATAGGGAGTATAAAAGAGGGTAGTACAATCTCGTATAAACAATATTTGTAATACTCAATTAGATATACGGCTTTAAGTATGTGGAAATATTTCTGTATATGTTGTATTTTATCTTTACAGAACAAAGATTTTTGGATATAATAGTTAAACTCATGACTGAAAAAAAAACTGTTAGTGAAGATAACGAAAATAACAAAGGAAGAACTGTCCTTAAAAGAGTAAAACTCATTAAAAAACCTTCATCGAAATCGACTGAAGAAAGTGTTAAATCTACAACTGCATCTGGAACGACAGTAGAGCGTCCTAAAATTAAATTTAAGCTTAAAAAAACCCAAAAATCAAAGGTTACGGTGTTAAAAATAGAAAAGCCTAAGCCTAAGCCGAGGATATTATCAAGGgtttcaccgaaagttttaccgaaagtttcaTCGGGAATTTTATCAAAAGATACATCAAGAGACAAAGCAACAGCTAGTCAATCTCAAAGTGTTCATAAAAAATTTAACACTGGTAAAGATTTTAGCAAAAGCAGTGATGGAAATAAAAAATTTTCTAGTAGTAGAACCCATGGGAATGTAAAACAACAAGGAGATGGACGTGAGCCTAGGCCTAGCGCTTCAAAGAGACAATTTAAAAGCAAGGCTTCATCACTGCCAATAACTCCGACACCTACGGAGCATTCTAAAAAGCGAAGTTTTAAGCCTGCAAGAAAAAGACAGTTTGTTAACAGAAAATCAAGAGAAATAGAAAAGCAACTTTATGTCAAAAACAAAACATCAGTTGTTCAACAAACAAACCCAGTTCCTAAATCTATTTCCATTATGGAAAATATTACCATTGCAGAACTTGCTAAAAAGATGAACTTAAAGGCATCTCAAATATTATCAAAACTTATGAATATGGGAGTTATGGTTAGTGTAAACTCCTCTATAGATGCTGATACAGTGCAATTGTTGGCATCAGAATATTCTTGTGAGGTAAAAATTGTATCTCTATACGACCAGACCACAATAGAAACACCGGATGATTTAGAAGCAGATTTACTTCCGCGAGCACCTGTTGTTACGGTAATGGGGCATGTAGACCATGGTAAAACCACTTTACTTGATACCATTAGAAAGACTAGTGTTGTTACTGGTGAACAAGGAAATATCACTCAGCATATTGGAGCTTATCAAACACATATTAGTGGAAGAGATATTACTTTTTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02866	Ldh_1_C	lactate/malate dehydrogenase, alpha/beta C-terminal domain	Domain	Interproscan
PF04760	IF2_N	Translation initiation factor IF-2, N-terminal region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006847	Domain	Translation initiation factor IF-2, N-terminal	Interproscan
IPR015760	Family	Translation initiation factor IF- 2	Interproscan
IPR015955	Homologous_superfamily	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	Interproscan
IPR022383	Domain	Lactate/malate dehydrogenase, C-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43381	TRANSLATION INITIATION FACTOR IF-2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006413	Biological Process	translational initiation	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-