Gene detail

Detailed information of MBSQW58_g13947 in Bathyacmaea lactea Gene info

Gene ID	Annotation	Contig	Start	End	Strand
MBSQW58_g13947	BINDING PROTEIN TRANSPEPTIDASE, PUTATIVE-RELATED	ctg680	97022	100969	+

Gene Structure

More details in Jbrowse Sequence

CDS

MBSQW58_g13947

Transcript

MBSQW58_g13947

ATGAAGTATGTCCTAACATATAAATTTTTTGCTTTCTCAACGTTTTTTTTGCTGTTTTTGGGAATACTTCAACACAAAAGCTATTCTTATCCCCTTATAAAATTGATAGATGACACAGATGTCTCTTATAAACAATATTTATCTATACAGAATGACAAAAAATCATCACTTACTCTTTTTGAATATACTATTTTGTCTCGTCTTACTCTTTCTCAAATAGCTAGCACTTTTAAGATATCTTTAGATTCTCTTATTACGCTAAACAGAAGTAGTATTTTTCGTACATATAATCCAAAAGAAACAGTTATTATTCCAAGCAAAAATGGTATATTTATGGCTGTATCACCAAAAAATGATGTAGAATTTCAAATTAACAAAAGACTATGGAAAACTCTTAAAAAAGACACACCAATTATTGTGCGTTCATCTTTGGCAAAAGTACGAGGGACATTTTATTTTATAGAAAATGAATTTTTATCATCTCTTGAAAAAAATACATGGGGAATCACTGCATTTCGCTTTCCTGTATTACAGGGAATTGTCAGCTCTGGTTTTGATATAGAATTAGTCCCATTAGTGGGAGAAAATTATTTTCATAAAGGAATTGACATTGCTGCAAAATCTGGGAGTCAAATTTTTGCCTCAAAAAATGGTACCGTGAGTGAAGATGGATACGATTCTACATATGGATATTTTATCATCATAAAACATGATGATGTATACTCCTCACTTTATGGGCATCTTCTAGAAAAAACAGTAAATATTGGCGATTATATCTATGCAGGAAGATTAATTGGATACATGGGAAATACAGGAATTTCAACTGGTCCACATGTGCATTTTGAAATACAACAAAATGGAAGTGCAAAGAACCCACTTTCAATTGCCTTTCCCCGAAcaaataatgcaagcaaaaatgcaagcaaaaaCGACTGCTATATATTTGGTTTAATGTTCACAAAAAATCAATTTGTATGGAAAATGTGTAAGATGTATCTTTTTTTACACAATGATGTTATTTTATCAAAAAATGCACCATTGAACAAAAAAACGCTTTACTTTTTATGTATAATTAACGATGATATAAGTGTCGGTGCTTTAATAGGTCCCTCCCAGTTTCCTATATAAGCATCGATGGTTTTACCGGTTCTCTACGAACCGGCTTTTATTATTATCATGTAATTCCATCTATTCTCTATGGTTTTATGTATAAAACACCACATGTGTTTACACTAAATATTGGCATAATTATATATAATAATAACTGTAGCTGGAAATTCTAAATATGTTAACCACCACAAGCTAGCAAAATTAACTTACATACAAATACGATGCCTATAAAAAAAAAGTTACCAGCCCACTTAAAAGTTAGTCTTATTTTTTCTGCAATTCTAGGAATAATTTTAGGACTAACAATTGCACAGGTTAAAAATATAGGCACGATAAATAGAATATCAAAAGCAGAAACAGCCCTACCTACTAGAGTGCTGGACAAAAATGAAAATCTTATCACTACTTTTTTTTCTGTCGAAAACCGAGACTTAATTCCCTTTGATGAATTGCTAAAAATATTTTTGCAAGCACTCATTACAAGAGAAGATCAATCGTTTTTTCAACACAGTGGATTTAGTGTTACGAGGCACAACTCGAGCAGCATGGAATATATTACGGAAAAAATTTGTATCAGGAGGAAGTACTCTCTCCCAACAGGTAGCTGGTGTACTTTATGCAGACAGACGAGAATTCTCTCTCAAACGAAAATTAAAGGAATTATGGTGGGCCTTCCAAATTGAAAGAAACTGGTCAAAACAAGAAATTTTAGAAGAATATCTCAACAAGGTGTATTTTGGTCATGGTAACTACGGCGTAGAAACTGCCAGCCAATTCTTTTTTGGACATGGTGCAAGTAAGCTCACTTCTGCGGAAGCAGTAATGTTAGTTATTCAACTTGCAAATCCTGTTCGTTACCTCCATTCAAAAAATCCAAGTCTCTGCACGCAGTCGCCAAAAAGAAATTATGAATCAAATGGTAAATCTTAAATTTATGGAAGAAAAACAAGCACAGTTAGACTTTCAAACCTATTGGGATACTTTTGACTTTACTCGTGAAGGGTTTTCTAGTGCCTTTTTACAAAGAAAGGACAATGCACCTTACTTTAGTGAATATGTACGAAACATTTTAAAAATCAACTTAATTTTACATCAGAAGAAATAAATACCGGCGGATTTACTATTTATACAACCCTAGATATTGACATACAAAATAGTGCTCAAAAATATTTTAAAGTAGGGCTTGCTAGATCTAATAAAATATATCAAAATAATATAAAAAATTCACTTGGACAAAAAAAATCTGTCATACCCATTGCCGCACTTGGAATGTTATTATTTGATACAAGTAATAGCTTTTTCTCACAAAGTACTCTTCAAATACAAGAAGCAAAAAAACAATTTTTAATAAACATGCAACCAACTCTTGCTTTAACAAATTTACTCTTTAATCCTTCTCCAAACACACTAACATCACAAGTTGTGCTTGCATCAAAAGACCAATCTACCGAAATATATCAAGAAGAAACAGTAGAAGGGGCTTTTATCAGTATAGACAACAGTGATACTTCTATAGTTTCTATGATTGAGGAAGCAAATTTGATGCCACTAATCAATTTAACAGAGCAACAAGTGCTTTTGTACAACCAGTTCATCATTTAAACCCCTTTATTACGCTGCAGGAATAGAAGCAAAACTTATTACCCCTTCTACCATAATTTGGGATAGCCCTGTTGTGTTTCACGATGAAGATGGAAATGCCTATGCCCCACTTAACTACAAAGGAGAATGGAAGGGACCTGTTACCGTACGTAATGCACTAGCACGCTCTATGAATGTACCATCACTTAAAGTTCTTGATATAGTTGGGTTTGATAGAGTATTAAGTACCACTGGTAAGTTGTTAGATATTCCAAAAAACCAATGGGAAAAAGTTGGATTAGTTCCACGATACCCAATAGGACTGGGAATAGTAAGTATATCTCCACTAGCAATGGCAAAAGCATATGCTACAATAGCAAACCTAGGAAAAAAAGCTCATCCTTTTGTTATTCGTAGCATTCGAGATAGAAATGGAAAAATTGTATATACCGCAAAAAGGAAAACAATTGGCAGTGACCAGGTAATTAGCAAACAAACAGCATACATTATTACATCAATATTACAAACTGCAACACAACGAGGAACACTCGCCTATGCCCGATATCAAGCAAATGGATTTACACAACCTACTGCTGGAAAAAACAGGAACCACTCAAAATTGGTCAGATTCTTGGACACTAGGATTTACTCCTTATTACACTACAGCACTATGGTTTGGATTTGACAGAGGTGGACAATCATTGGGAACAAATCAAACTGGTGCAGTTACCACGACATCCAGTTTGGGCAAAATTTATGGAAGAAATAAATAAATCACTTCCTATTGCTAAATTTAAAAAACCAAATGGTATTGTAACAGCACTCATTAATCCAAAAAATAATACACTAGCTACTAGTAAATCTCTTCAAAAAATCAAAGAAGTATATATCATTGGTACTGCCCCTACACAATACGATAATCCTGTTGAAGAAACCCTAACTCATAATAAACTTGTACAAAAACTAGAAACGCATTCATGGaaattaaaaataaattctaatcaaattcctacaacaaatcaaacatcaaatAATTCTAATCAATATAAAAGTAGATACATCAAATCACCAAACACAAAACTCTATGTGCCAAATGCAAGTGCACTACGCTACAAAGATAATAGTAACAGAACAAGAACTACTACTGCATCTTCTGGTGATATTTCTACTAATCGGATAAACTCAACGGACAATTTTGATACACTTGATAACCCTAACAATACATCTGACGAAGAGTTAAACAATAGTACTAACTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00905	Transpeptidase	Penicillin binding protein transpeptidase domain	Domain	Interproscan
PF00912	Transgly	Transglycosylase	Family	Interproscan
PF01551	Peptidase_M23	Peptidase family M23	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001264	Domain	Glycosyl transferase, family 51	Interproscan
IPR001460	Domain	Penicillin-binding protein, transpeptidase	Interproscan
IPR011055	Homologous_superfamily	Duplicated hybrid motif	Interproscan
IPR012338	Homologous_superfamily	Beta-lactamase/transpeptidase-like	Interproscan
IPR016047	Domain	Peptidase M23	Interproscan
IPR023346	Homologous_superfamily	Lysozyme-like domain superfamily	Interproscan
IPR050396	Family	Glycosyltransferase 51/Transpeptidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32282	BINDING PROTEIN TRANSPEPTIDASE, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008658	Molecular Function	penicillin binding	Interproscan
GO:0008955	Molecular Function	peptidoglycan glycosyltransferase activity	Interproscan
GO:0009252	Biological Process	peptidoglycan biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-