Gene detail

Detailed information of MBSQW58_g13928 in Bathyacmaea lactea Gene info

Gene ID	Annotation	Contig	Start	End	Strand
MBSQW58_g13928	UBIQUITIN-PROTEIN LIGASE E3A-RELATED	ctg680	62353	64713	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

MBSQW58_g13928

atgacagtggacagctcggcgatggcactactACAAATAGGGAGTGAACCAACACAAATAAGAACTGCTACACAAGAAAATACACCAAAAAAAATAGGCACTGCCCTCATATGGGACAAAATCTCTGCTGGACATTACTACACCATGGGCATAAAAAAAGACGGCACCTTGTGGGCATGGGGTAAAAATAACTTAGGACAACTTGGCGATGGCACTATTATAAATAAAAATGTACCAACACAAATAAAACAATACACAACACAATAAATCTCATTTTTTTCAAAAATACTAAAAATTATAGACACAAAAACATAAAAGCGCTAGCATATACCTATATGTTCTTAAATATTCAATTATTACATAATAAACTTATACAAATCTTGACTTCTTTCTCTATGTGTGTTTGTGATTTTAGAACTAAACACCCCCCCTCACACACACCACTCAAATATTCATAAATATAAAATCTTACTTACACAAAATATCTCTAGTTTTAATTTTTTTTAATCTCTCTCTCAATTCATTTATAAAAAAAATCTCAAAAAAAATTTATTTACAATCTCAAAAGGAGAAATCCATATGAATACTATGTTTTTAATCTTAGGTCTTTTTTCTACTTATCTTCAGTAGCTACACTTTTTTTTTGATAAGTGTGCTCTTGTTAAATGTGCTGTTGGATCTGACAATACTTCTAATAGTCTTCCAAATAATTTTGTTTCTTTTTCTTCTGGAGAAGACTacaccattggtgtaaaagcagatggcaccttatgggcgtggggtaataatgatgaaggacaacttggcgatgatactattcgtaaataaaacaaaataccaacaaaaataggcactgcatcatggagttctatttctgctggagcctctcacaccataggtatacaaacagatggtaccttgtgggggtggggagagaatgataaaggacaacttggcgatgacactaccatagataaacatgtaccaacacaaattggtaatgttgccacatggagctctatttctgctggaaaatctcacaccatagccatacaaacagatggcaccttatgggcgtggggtaataatgataaaggacaacttggcgatgactccactgttactaaagatacaccaaaacaaataggcactgccacatggagttatgtttctgctggaatttcttacactgttggtatacaagtagatggcagcttatgggcgtggggAGGTAATGACTTTGGACAACTTGGCGATGGGACTAGTGTGGAGAAACACAAGCCAACAAAAATAATAATAGAAAGTAAAAGAGATGCTGCTTGGAGCTATATATCTCATTGGGGAATATATAACAGCAGGTATACAAACAGATGGCACCTTGTGGACATGGGGGTGGGGAAGTAATGGAGAACTTGGTTTTGGTGAAGATACTACGGTAGAGATACCAAAACAAATAGTATTAACTGGTAATGCTACCACATGGAGCAAtatttttgttggaggtaatcacaccataggcatacaaacagatggcaccatatgggcgtgggtgtacaatgatgaaggacaacttggcgatgatactattataaataaaaatgtaccaacaaaatagggcactgccacatggagttctatttctgctggaaacggtcacaccataggtatacaaaaagatggcaccttgtgggcgtgggggtataataataaaggacaacttggcgacggcactaatataaataaaaatgtaccaacaCAAGTAAAATATAACACAGGAAGCCAAAGTACGCACAAATAAAGTAATACATATACAAGGAATAAAATAAAATATTTACAATATTTTTTATAAATCACTCAAAGTTTTTTCATTGAAAATTGGCTGTATTTAAAATATACTACGAGTATATGAAAAAAATAATTTATTATGTGGCAGCTTCATTAGACGGCTTTATTTCTGGTCCAAACAATGACATTAGCACATTTATTACAGACGGTGATGGTGTTGAACAATATAAAAAAGATCTTTTACACTTTGATGTTGTAATAATGGGTCGCCATACATATGAAATAGCTTACAAATATGGTATTTCCATAGGACAACCTGCATATCCAAATATGGAACATTATATTTTTTCAAACTCTTTACGCTTTGAAAATCCTCACAAAAGTGTACATGCTGAAAAAATTGATATTAACAAAATTATTGAGTTAAAACACAAAACAGGCAAAGATATTTATCTCTGTGGAGGTGGAATATGTGCTAGTTGGTTGTTAGAAGAAGGACAAATAGATATTTTGAAAATCAAACTAAACCCCATCATTTTGGGAGACGGAACAAAATTGTTTGGTGATTCAAAATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00415	RCC1	Regulator of chromosome condensation (RCC1) repeat	Repeat	Interproscan
PF01872	RibD_C	RibD C-terminal domain	Family	Interproscan
PF13540	RCC1_2	Regulator of chromosome condensation (RCC1) repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000408	Repeat	Regulator of chromosome condensation, RCC1	Interproscan
IPR002734	Domain	Bacterial bifunctional deaminase-reductase, C-terminal	Interproscan
IPR009091	Homologous_superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Interproscan
IPR024072	Homologous_superfamily	Dihydrofolate reductase-like domain superfamily	Interproscan
IPR051709	Family	Ubiquitin ligases and GTPase regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45622	UBIQUITIN-PROTEIN LIGASE E3A-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008703	Molecular Function	5-amino-6-(5-phosphoribosylamino)uracil reductase activity	Interproscan
GO:0009231	Biological Process	riboflavin biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-