Gene detail

Detailed information of MBSQW58_g13644 in Bathyacmaea lactea Gene info

Gene ID	Annotation	Contig	Start	End	Strand
MBSQW58_g13644	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	ctg635	92320	94505	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

MBSQW58_g13644

ATGAGTGGAGGACTAGCACCTAGTAAAAGTACTGTTTATGTGTCTAATTTCCCCTTCACATTAACCAACAATGATCTTCATAAAATATTTGAAAAATATGGAAAAGTTGTGAAGTAAGTAAATATAACAATTCGGTGAGCTGGCAAGGAAATCTCGTCTGTATGCAGACAGTTAGACAATGTATTAGCACTTCTCTCTCATCTTCAATTTATTATTCTGGCAAAATACACACATTTTCCCAGAACTTCCTTTTGTTATTTCTTTGCCAAAATATATGTGATTTCTTAATCATATCTTCCATTCAACTATTTATCCTTGAGATGGAAATACCaccattgaggctgccatgatgaatctacgattaaggcagccgtgatggagctaccattcagactgtcatgatggacctactattgaggcagtcatgacaaacctaccattaagagagtcatgacaaacctactattgaggcagccatgatgaagctaccattcaaactgtcatgatggacctaccattgaggcagtcatgacaaacctaccattgagcgagtcatgatgaacctaccattaagacagtcatgacaaacctaccattaagagagtcatgacaaacctactattgaggcagccatgatgaagctaccattcagactgtcatgatggacctaccattgaggcagtcatgacaaacctaccattgagcgagtcatgatgaacctaccattgaggcagtcatgacaaacctaccattgagcgagtcatgacaaacctaccattgagcgagtcatgacaaacctaccattaaggcagcagctatgatgagcctatgactaaggcagctatgaacctaccattgaagaagtcatgatggacctactattgaggcagtcatgatgaacctaccattaagacagtcatgacaaacctaccattgagcgagtcatgatgaacctactattgaggcagtcatgacaaacctaccattgagcgagtcatgatgaacctaccattaagacagtcatgacaaacctaccattgaggcagtcatgacaaacctaccattgaggcagtcatTAATTTCTAGACCAGGGGTTCTCAAAAATTAACTAGGAACCACTGGTCTAAACCaatcagccatggttattacaacttatcaggggggtgtacaattctattattagttgtttgaatgatgccagacatcactgtttgaatgatgccagacatcactgtttgaatgacgccagacatcactgtttgaatgacgccagacatcactgtttgaatgacgccagacatcactgtttgaatgatgccagacatcactgtttgaatgacgccagacatcactgtttgaatgaagccagacatcactgtttgaatgaagccagacatcactgtttgaatgatgccagacatcactgtttgaatgatgccagacatcactgtttgaatgatgccagacatcactgtttgaatgacgccagacatcactgtttgaatgatgccagacatcactgtttgaatgaagccagacatcactgtttgaatgatgccagacatcactgtttgaatgacgccagacatcactgtttgaatgaagccagacatcactgtttgaatgaagccagacatcactgtttgaatgacgccagacatcactgtttgaatgatgccagacatcactatttgaatgatgccagacatcactgtttgaatgatgccagacatcactgtttgaatgaagccagacatcactgtttgaatgaagccagacatcactgtttgaatgaagccagacatcactgtttgaatgatgccagacatcactgtttgaatgatgccagacatcactgtttgaatgatgccagaaatcactgtttgaatgaagccagacatcactgtttgaatgacgccagacatcactgtttgaatgacgccagacatcactgtttgaatgacgccagacatcactgtttgaatgaagccagacatcactgtttgaatgacgccagacatcactgtttgaatgacgccagacatcactgtttgaatgaagccagacatcactgtttgaatgacgccagacatcactgtttgaatgaagccagacatcactgtttgaatgaagccagacatcactgtttgaatgttaccaaaccatctaaaaacgctgatttctag

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR044598	Family	Zinc finger CCHC-type and RNA-binding motif-containing protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46259	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005689	Cellular Component	U12-type spliceosomal complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-