Gene detail

Detailed information of Lsat_s162.g0008.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s162.g0008.t1	ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED	Lsat_scaffold162	345016	362390	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s162.g0008.t1

TTTTTCGTCACAACAAAATCATGCTTGGCATTCATCGAATAACAGCAAGACATATCAAACATGTTGGGAAAACAGTTTCAGCGTTATACCACACTGATGACATGGCAGCCATTGGATCCCATGTCGACACAAACTCTTCCGATTACAAGGAGAACTATGAGACGATGAAAACGCTGGTGATGGACCTGCAGTCAATGGTTGGAACAATTGCTAAAGGTGGAGGTGAGAAAGCCATACAGAGACATCTTTCTCGGGGTAAATTATTACCCCGTCAGCGGATAGACAATCTCATTGATCCTGGGTCTCCCTTCTTGGAGTTGTCCCAGTTGGCAGGATACAAGTTGTACGGGAATGATCACGTCCCGGCTGGCGGAATAATCACAGGAGTTGGCAGGGTGTCTGGAGTTGAGTGCCTGGTTATAGCTAATGATGCAACAGTGAAAGGTGGAACTTACTATCCGATCACTGTGAAGAAACACCTCCGGGCACAGGAGATTGCCCAACAGAACAGACTACCATGTATCTACCTAGTTGACTCTGGTGGCGCAAACCTACCTCATCAGGATGAGATTTTCCCAGACAAGGAGCATTTTGGGAGGATATTTTACAACCAGGCTGTCATGTCTTCCTTGGGCATTCCTCAGATTGCTGTAGTGATGGGCAGCTGTACCGCAGGAGGCGCCTATGTGCCGGCCATGGCTGACGAGAGTATCATAGTGAAGGAACAGGGCACTATCTTCCTGGCTGGCCCCCCGCTGGTGAAAGCTGCAACTGGCGAGGAAGTCTCGGCTGAAGACCTAGGTGGCGCTGCTATGCACTGCGGGACGTCTGGAGTGACTGACTACTTTGCACTGGATGACCAGCATGCACTGCACCTAGCGAGACGTGTCGTCAGTAACCTCAACTACATCAAGTCACCCAGTGTAAAGATAACAACACCAGAGGATCCACTCTTTCCAGCAGATGAACTCTACGGCATTGTTGGCGGAAATCTTAAGAAAACATACGATGCTCGACAGGTTATAGCACGTATTGTGGATGGCAGTAGGTTTGATGAATTCAAAGCTCGTTTTGGAGAGACACTTATCACAGGATTTGCCCGATTGTGGGGTTATCCAGTTGGAATTTTGGCCAACAATGGAGTGCTATTCTCAGAGTCCTCACAAAAGGCAGCACACTTCATAGAGCTGTGCTGTCAACGAGGTGTCCCACTGCTCTTCCTACAGAATATAACAGGATTCATGGTTGGTCGGGAAGCCGAGGCAGGTGGCATCGCCAAGCACGGTGCCAAGATGGTGTCAGCAGTGGCATGTGCCAATGTGCCGAAATTCACCGTCATCATTGGTGGGTCGTACGGCGCCGGCAACTACGGCATGTGTGGCCGAGCCTACAGCCCACGCTTCCTGTACCAGTGGCCAAATGCCCGTATCTCTGTGATGGGGGGCGAGCAGGCAGCCAACGTACTTGTCACGGTACAGAGTCAACAGAAACAGCGTGACGGCAAACAGCTGAGTGCTGAAGAGGAGAAGACTATCAGGGATCCCATCCTAGAGAAGTATGAGAGGGAAGGACATCCCTACTACTCCAGTGCTAGATTATGGGATGACGGTGTCATCGATCCTGTAGACACACGAATGATTCTTGGTTTGAGTCTCAGCGCTACAATGAATGCGCCGTTACAACCTGCCAAGTTCGGAGTGTTCCGCATGTGAGCAAAACATCTGGCAGTACCTGGTGACAATACTTCAAAATTGCAATATGCGACTCAGAAAACTACCTGCATGCTGGTTAATGATTTTTGCCTGATCAGAGGAGTACAGATATTGAAAAGTATTATGATAAGATAAAGGTTATTATGATAAGATATGTACAGGTACTTGCTGTCCTCAATTTTATGTGGAAGTGGAGGCCATACATACACAGCAGGTATTAAAGAAATGTGTGCAGATGTATACGTATGCACACAAGCACGTGATGAATCCAAGAACTGCTATAGTGTGGTGAATATAGATCAAAATGTGCTAAAGATGACGTGTGCATTACTAAATGCAATTGAGATACTATACTATAACAGTATAGATACAAGACAGTATTATAATGTTATATCAGGGAACAATATATGAAAGATTTTCCAGTATATATATATATTTTTGTATGATGTACTAGATATATTTTGTCTGTAAGGTAGTTTTGACAAAGAATATATAATAAACATGTAGATAGATATGTAATAAACATCCTACATAGCGTTGTAGTCATTGGTGTACATAGTGGCAGATTATCATAGGAGCAACCGGGGCACGTGCCCCAGGGCCCCGAGCTCACGGTGGCCCCACTCGAATTGATTGGAAATACAATGAAAACTTGACTGCTATTAATAAAAATGCAATTTTTTTAAATCCTCAAATTCAACAGATT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01039	Carboxyl_trans	Carboxyl transferase domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011762	Domain	Acetyl-coenzyme A carboxyltransferase, N-terminal	Interproscan
IPR011763	Domain	Acetyl-coenzyme A carboxyltransferase, C-terminal	Interproscan
IPR029045	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR034733	Domain	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Interproscan
IPR045190	Family	Methylcrotonoyl-CoA carboxylase beta chain MCCB/AccD1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22855	ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004485	Molecular Function	methylcrotonoyl-CoA carboxylase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006552	Biological Process	L-leucine catabolic process	Interproscan
GO:0016874	Molecular Function	ligase activity	Interproscan
GO:1905202	Cellular Component	methylcrotonoyl-CoA carboxylase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-