Gene detail

Detailed information of Lsat_s144.g0020.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s144.g0020.t1	SPRY DOMAIN CONTAINING SOCS BOX PROTEIN	Lsat_scaffold144	398347	413375	-

Gene Structure

More details in Jbrowse Sequence

CDS

Lsat_s144.g0020.t1

ATGGGACAAGACGCGTCGACACTCGGCGGCTGTGACGTAGAACGCCTGAGGATGATGCTGAACCTCGTGCAACTGGAGCAGAGCATGCGACAGCGACCGCCGGGAGAGACGAGTCAGGCCGACCATGCCTGGGACCCCGACGACTGCTCGCCCAACTTCACGCTGAAGGAGAATGATCGCGTCGCCGAAAGAAGTGGTAGAACCACGTCCACTGATATGGTGAGGGCCAAGAAAGGATACACCAAAGGCACCCATATTTGGGAGATAACTTGGAAGAAAGAACATCGCGGATCTCATGCAGTTATTGGAGTTGCTTCCAACGACGCTCCTCTGCAGTGTGCTGGTTATTCTGCGCTGTTGGGTTCCAACGACGAATCCCTGGGTTGGGACATCGTTGCCAACGTCAGTTTGTTCAATGATTGTGTCATGAACAAGTACCCACGAGATGACGTCCAGCCGGGCTTCCAGGCACCGGATGTCATCCTCGTCATTCTCAACATGGACGAGGGGTCTCTGCGCTTCAAGAGCGGCATTGACCGCACGGACTACGGCCTCTGTCTCAGCGGACTGCGCGCGTTCTCTCGCAATGGACAGAAGTTATACCCAGCCATTAGTGTGACGAAACATGGTGCACAGATTGGGATTAAGTACTTGGGAAGTTCAGAACCCATGTACGACGCTGTTGGGGGGACAGCAGACACGGCTAGCGGCACTGTGGTGTTTCACTCCGAGGTTGGCGCAAATATTGAACTCAGCAACGGTCGCCGCACGGCAACTAGAGTAAGAGGTCACAACAAAGGCGTAATTATGTCAACCAGACCACTGAAAGACGACGAATACTTTGAAGTAAAACTCGACAAGACAAAGCTTCTACCAACGAAGTACGTGATGGACATCGGCGTAACGACGAATTCGCCAGAGAAGCTCAATTTTCCGGAAACAATGACCGACTGCCAGCATGGCCGTACTTGGATGTTCTGCGACTCACAGATTGTTCTCAATCAAAAAGTACTTGGACACGTCCCGAATTTCAGTCTGAATGAACTAGAGGAGGGCTCGACTGTTGGCCTGATGAGGACTGCGAGCGGTCAACTGCACATCTTCCTGAACGGCCTCTTGAAAGGCAAGTTCGCCATGAAGGTACCACCAGATGTCTACGCTGTAGTTGACCTGTTCGGGAAAGGTTGCCAGGTGACTATAACTGGCTGCCCGCCGTCCGCACCCACGAGTCCGTCGACTACATCGCCGCCTTCACGCGGCGCCGGGGCCACTGCACTCCTCGCAACGACTGCTACCAGGTCAACCGTCGAAATCATAACTGACAACGTGCATGCGACGATAGCGCTGATGAAGCAAAAAGATAGCGCGGGAATCCCAGGTGTCTTTGCGGCAATACAGAAATACCTCCTCAATGTCTACAACGACATGAGAACACCTGCTCACAAGCAAATGCTGGGAGACCGCTTCTGTGACCTGGATGGCGCAAAGGCCATCGCTAATTACATGGTGTTCCTAAAAGACATAGGAATTGAAAACGAGGAGGTCAAGTATTGCGTCTTCGCGTGTTTCAATGTGCTTTTGAATTTTACACACGCGAGTCACAACTTTGCAAGGGCGCTTGGTGAAACAGAAGCATTTCCTATGCTTCTCAGGCAAGCGGACAAGCTGCGAACACGCTATACGTCCAGCAAGACCAAGGCAAGGCTGGTGGTGTATTCCCTCGCCGTCCTTCACAACTGCTCCAAGACGGCAGGCAACGTGAACGCCCTGCGCAGAGCCGGAGCTAGAGAGGTTTTTGCCAAGTACTGCGACCCGAGCGAGCATGAGCCGAGTATCGCGTTCGTTGCTCTTCTCTCGCTGGTCAACATCCTGGTTGGCCCTGAAGTGAAATCTCTCAAGGTACACGACAACATGCTGGCAACCCTTGTGAAATACACGGCCGACGCTGTGGGAAACGGCGACAACCACTCTGCACCAGTTATCTTCGCGACTGCTGAATTGGGCTTCTCGTTCTACTCGACTGAGCAGGTAGCCGCCATATGCAACCTGAGCAAGAACACCGCTTGTCGCGTGTCACTTGTAAAGAAGAAAGTCACCCAACACCTTGTCCGATTGATGGAGATCGGCGATCAGACGGAACAGGAACTCGCCTGCAATGCAGTCTGGGAACTGCTTTCGGAGCAGACGGTCTTGGAAGTGATCATGTGCCCGAAACTGACGGACGTCGTCACGAAGACGAAAGACGCTGACGTGAAAGAAGTTGCTGACGCTGCAAAACGATTGCTGGTGAAGATTGAGCAAGTTCTCCAGAGAAGCAGGGCTGCCGGAACCACCCAACAAGTAATGCCAAGCACTGCGGCGCAGTCTCGGGACTGCAAATACAAACAGGCGTGTATGCGCTACTTGAAACAACTCAACATTCGAGATGAAAATTGGGACAAGGAATGGCACGCGTGTTACTGCAGCGATTGTAACGCTGCAAGTGAAAAAGACAACTATGACACGCGCGGAGACCCTCCCAGGCAGTACGGAGTCCCACTCGGCTGGCACCGATTCGGAATCAATGTTCTTCCACAAAAGAAACGCCATTTCGAAGAGTGGCATCGAGCATTCCACGGCACCAAAGCCGACAGAGTGGTCATGATACTGGACATTGGTGATCTTATGTTACCAGGCGATAAGATTCGAGGCGGAGACAAAATCAAAGAAAGACCTGGTCACTTCGATACACATCGTAAGCCTGAAAACTTCGACACTCGCCAGATCTTTGTTTCTCCGAGCATCAGATACGCGGGCCACCACGCGTACGCCACACCGTCAAGATACGTCGACGAAGTGACCAACACCACGTACAGGAGTCAAGTGGCGTTCCAACTGCTCATCGCACCCCAGAGTTACACGGTCGGCCCGGAGACAGTTGGGGCGACCCACGACATCGACCCTAAGTTCAGCAATCAGGAGCTGGAGTGGTCAACTGACCGGAGAGGCTGCATTGTATTGTACGGTCTGCTCGTGAAACTGGATGAAGTGAGGAAGTGA

Transcript

Lsat_s144.g0020.t1

CTGTTTCTATGCTGGTTTTCGGAAACTAGACCTAGACGATGGGACAAGACGCGTCGACACTCGGCGGCTGTGACGTAGAACGCCTGAGGATGATGCTGAACCTCGTGCAACTGGAGCAGAGCATGCGACAGCGACCGCCGGGAGAGACGAGTCAGGCCGACCATGCCTGGGACCCCGACGACTGCTCGCCCAACTTCACGCTGAAGGAGAATGATCGCGTCGCCGAAAGAAGTGGTAGAACCACGTCCACTGATATGGTGAGGGCCAAGAAAGGATACACCAAAGGCACCCATATTTGGGAGATAACTTGGAAGAAAGAACATCGCGGATCTCATGCAGTTATTGGAGTTGCTTCCAACGACGCTCCTCTGCAGTGTGCTGGTTATTCTGCGCTGTTGGGTTCCAACGACGAATCCCTGGGTTGGGACATCGTTGCCAACGTCAGTTTGTTCAATGATTGTGTCATGAACAAGTACCCACGAGATGACGTCCAGCCGGGCTTCCAGGCACCGGATGTCATCCTCGTCATTCTCAACATGGACGAGGGGTCTCTGCGCTTCAAGAGCGGCATTGACCGCACGGACTACGGCCTCTGTCTCAGCGGACTGCGCGCGTTCTCTCGCAATGGACAGAAGTTATACCCAGCCATTAGTGTGACGAAACATGGTGCACAGATTGGGATTAAGTACTTGGGAAGTTCAGAACCCATGTACGACGCTGTTGGGGGGACAGCAGACACGGCTAGCGGCACTGTGGTGTTTCACTCCGAGGTTGGCGCAAATATTGAACTCAGCAACGGTCGCCGCACGGCAACTAGAGTAAGAGGTCACAACAAAGGCGTAATTATGTCAACCAGACCACTGAAAGACGACGAATACTTTGAAGTAAAACTCGACAAGACAAAGCTTCTACCAACGAAGTACGTGATGGACATCGGCGTAACGACGAATTCGCCAGAGAAGCTCAATTTTCCGGAAACAATGACCGACTGCCAGCATGGCCGTACTTGGATGTTCTGCGACTCACAGATTGTTCTCAATCAAAAAGTACTTGGACACGTCCCGAATTTCAGTCTGAATGAACTAGAGGAGGGCTCGACTGTTGGCCTGATGAGGACTGCGAGCGGTCAACTGCACATCTTCCTGAACGGCCTCTTGAAAGGCAAGTTCGCCATGAAGGTACCACCAGATGTCTACGCTGTAGTTGACCTGTTCGGGAAAGGTTGCCAGGTGACTATAACTGGCTGCCCGCCGTCCGCACCCACGAGTCCGTCGACTACATCGCCGCCTTCACGCGGCGCCGGGGCCACTGCACTCCTCGCAACGACTGCTACCAGGTCAACCGTCGAAATCATAACTGACAACGTGCATGCGACGATAGCGCTGATGAAGCAAAAAGATAGCGCGGGAATCCCAGGTGTCTTTGCGGCAATACAGAAATACCTCCTCAATGTCTACAACGACATGAGAACACCTGCTCACAAGCAAATGCTGGGAGACCGCTTCTGTGACCTGGATGGCGCAAAGGCCATCGCTAATTACATGGTGTTCCTAAAAGACATAGGAATTGAAAACGAGGAGGTCAAGTATTGCGTCTTCGCGTGTTTCAATGTGCTTTTGAATTTTACACACGCGAGTCACAACTTTGCAAGGGCGCTTGGTGAAACAGAAGCATTTCCTATGCTTCTCAGGCAAGCGGACAAGCTGCGAACACGCTATACGTCCAGCAAGACCAAGGCAAGGCTGGTGGTGTATTCCCTCGCCGTCCTTCACAACTGCTCCAAGACGGCAGGCAACGTGAACGCCCTGCGCAGAGCCGGAGCTAGAGAGGTTTTTGCCAAGTACTGCGACCCGAGCGAGCATGAGCCGAGTATCGCGTTCGTTGCTCTTCTCTCGCTGGTCAACATCCTGGTTGGCCCTGAAGTGAAATCTCTCAAGGTACACGACAACATGCTGGCAACCCTTGTGAAATACACGGCCGACGCTGTGGGAAACGGCGACAACCACTCTGCACCAGTTATCTTCGCGACTGCTGAATTGGGCTTCTCGTTCTACTCGACTGAGCAGGTAGCCGCCATATGCAACCTGAGCAAGAACACCGCTTGTCGCGTGTCACTTGTAAAGAAGAAAGTCACCCAACACCTTGTCCGATTGATGGAGATCGGCGATCAGACGGAACAGGAACTCGCCTGCAATGCAGTCTGGGAACTGCTTTCGGAGCAGACGGTCTTGGAAGTGATCATGTGCCCGAAACTGACGGACGTCGTCACGAAGACGAAAGACGCTGACGTGAAAGAAGTTGCTGACGCTGCAAAACGATTGCTGGTGAAGATTGAGCAAGTTCTCCAGAGAAGCAGGGCTGCCGGAACCACCCAACAAGTAATGCCAAGCACTGCGGCGCAGTCTCGGGACTGCAAATACAAACAGGCGTGTATGCGCTACTTGAAACAACTCAACATTCGAGATGAAAATTGGGACAAGGAATGGCACGCGTGTTACTGCAGCGATTGTAACGCTGCAAGTGAAAAAGACAACTATGACACGCGCGGAGACCCTCCCAGGCAGTACGGAGTCCCACTCGGCTGGCACCGATTCGGAATCAATGTTCTTCCACAAAAGAAACGCCATTTCGAAGAGTGGCATCGAGCATTCCACGGCACCAAAGCCGACAGAGTGGTCATGATACTGGACATTGGTGATCTTATGTTACCAGGCGATAAGATTCGAGGCGGAGACAAAATCAAAGAAAGACCTGGTCACTTCGATACACATCGTAAGCCTGAAAACTTCGACACTCGCCAGATCTTTGTTTCTCCGAGCATCAGATACGCGGGCCACCACGCGTACGCCACACCGTCAAGATACGTCGACGAAGTGACCAACACCACGTACAGGAGTCAAGTGGCGTTCCAACTGCTCATCGCACCCCAGAGTTACACGGTCGGCCCGGAGACAGTTGGGGCGACCCACGACATCGACCCTAAGTTCAGCAATCAGGAGCTGGAGTGGTCAACTGACCGGAGAGGCTGCATTGTATTGTACGGTCTGCTCGTGAAACTGGATGAAGTGAGGAAGTGATCATCGTTTAAATGGAATGTACAACGAATTTTATTTGTGAATTTATTAGTATTAAAGACATATCGGTTGGCTCCTGTGATTCATTGCTATTGCTGCCACAGCTGCGATCGCGTGCAATTTCGAACGGAGGAAAGTTCAGTCTTTTTTTTACTATTTCTGCTGCTGACAATCGCAATGTGTGCTTTATGGTCTTCTTTATCATTTCATCTGACTGTTGTATGCATGTTTTATGGAAAACAATTTCAAACATGATTCTAAAGATGTGATTTATCTATCAATGACTATGGTTATTGTAGTGCTGTGCTTTGCTGTGTATAGTTTTTGAGAAATTTAATGTTCTGCATTTTGTAAAAGTGGTTGGCGGTGACAACAGTGGTGTCGGTATACATTATGGATAATGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00622	SPRY	SPRY domain	Family	Interproscan
PF07177	Neuralized	Neuralized	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001870	Domain	B30.2/SPRY domain	Interproscan
IPR003877	Domain	SPRY domain	Interproscan
IPR006573	Domain	Neuralized homology repeat (NHR) domain	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR043136	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR050672	Family	F-box/SPRY and SOCS box protein families	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12245	SPRY DOMAIN CONTAINING SOCS BOX PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-