Gene detail

Detailed information of Lsat_s127.g0001.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s127.g0001.t1	PROTEIN PHOSPHATASE	Lsat_scaffold127	16816	36780	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s127.g0001.t1

TTTGCGTACTAGGCGTTCGCTGCGATGGCTTTCGTCGAATAAATTCAAAACATTGTGGGTTGTTTTCCAAGGAGGATTTCCTCCATGCTATGTATGCTCTGCGGTATGGGCAAGACGTATTACAATAGGGTGAAAGATTCATAGGAAATAATCAGGTACGTGCACACAGAAGAGAACCGAACAGAGAGGGGGTTGAATCGGCACCAACATGGGGGCGTTCCTTGACAAGCCGAAGACTGAGAAGCACAACGAATCAGGCAGTGGGAATGGACTGCACTTTGGCCTGAGCAGCATGCAGGGGTGGCGGGTCGAGATGGAGGACGCACACAGCGCCATCATTGGCCTGCCTGCCGACCATCTCAAGGATTGGTCGTTCTTTGCAATCTTTGACGGACATGCAGGTGCGCGCGTTTCGTCATGTTGTTCTGACCAGCTTCTCGAGGCGATAATGTTGAACGAATTTTTCAAGGCAGGCATCTCAGGAATCATTGGGCACAAGGAGTCAGGCGGCGATGGGCTTCAGCCGTTTCTTGAGAATGTCAAGAAGGGTATAAAGATGGGCTTCCTGGCTCTCGACGACAAGATCCGTGTCATGCCAGAGATCATGAGCGGCGAGGATAAGAGTGGCTCGACAGCAGTGTGCACCGTCATTTCGCCGACGCACATCTTCTTCGGCAACTGTGGCGACTCACGTGCTGTTCTCTCGAGGGACAACCGTGTCTCGTTCCGCACACTGGATCATAAACCTATCAATCCAGTTGAGAAGGAGCGCATCCAGAATGCTGGGGGCAGTGTTATGATCCAACGAGTGAATGGCTCGCTGGCAGTATCACGAGCGCTTGGCGACTTTGAGTACAAAAACGTTCAGGGCAAGGGTCCATGCGAGCAGCTTGTCTCGCCCGAGCCCGAGGTGTTTATGGAGGAACGGTCAGCAGGTGACGAATTCGCAGTGCTTGCTTGTGACGGCATCTGGGATGTTATGTCGAACGATGAACTGTGCGACTTTGTGCGCAGTCGAATGAAGCTCAGTGACAATTTGCAGCTCCTTTGTAACCAGGTCATCGACACTTGTCTCTATAAGGGGAGTCGAGATAACATGAGCATCGTGATCATCGCATTCGAAGGTGCCCCCAAAGTGTCTGAGGAGGCGCAGAAGAAAGAGGCTTTGTTGGACGCAAGGCTAGAGGCAAAAGTCAAAGAGATAATTAATCATGCGGAACCACCAGATGGCGGGGTTTTACCATACATCATGCACCTGCTGTCTGTCGAAGAAATTGAAGGCCTGCCCCCTGGTGGCGGCCTCAGTGCCAAACGAACCACAATCGAACAAATTGTTAATAGGTTAATCCCTCCGAAAACCGATTCCGAATGACGCACGAGGGCCAGCATGTTTTGTGTGACAAGCCACAGTTCGGATAGGATGTTCTAGTGACATGGCCACAAGGATAGAGGACGTGAGGGAGGGACAACGATTGCGGCCATCTGGCTTTGTCTCTGCTCGACCTCACGAGGAGAGCCGCAGGACCTCATGAAGACATAGTCAGCGTTGTTATGTCTATGCACACAGTGGCTAGTTTGGCCGCTGCTGCTGTTGATAGCATCAACATTTCTGGCAATTTGGACGATTAGTATCAAGTAGTGCAAACACACATGCACACACCACGCGCACGAACACACACACACACACACACACACACACACACACACACACACAAACAGCTGAGGAATTCCTGAGATGCTTGACCACCGTGTGAATTGAGGTACTGTTTTTTTTTGTGTTTATCACGATTCAGATTTCGTTTTCGTGCTTGAGAGTGGCGCGACGATCGCCTCGTGCTGGCAGTGCTACTCGCAATGCACTGCAAGTTTTCTGTACGTTTGCAAGCGAGGCGACGAAGATGCGTCAACGCCGACATGCTCACACCGATTAACATTTGCTGTTTCTGTTCTGTTGATGTACATACTTTCGTGGTGACCAGCACGTTTTGGTGTCACACGCACGGCTTTGCAGCGACTCGCCCGGAGGGTTTCTGACCGCAAGAAACTGGGAGTTAGGTGTTGCGTTGAGGCATGTGGCTGTCCACAGCATATTTGTTCATTCACCCGTAGATCCCTGCACTCACAGATCTGCCACTGTATGCATACATATATATATATATCATACAAATCTATATATAAATGTGTGTTAACTGTGCATTAGTTGTGCTCATGTTAGATTTGTGTTGTTTAATCGACTACCACGACACTGGAATGTTGTTTCGGGCCGACGATATAGTTCTTCCACTGTTTGATCATGTCTATCGTAGGCGGGGCTGTCCCTTGCCGTTAGCGAAATAATCGCTTGTCGGATCGCCTCGCCGGGCGAGATACGAGTATTGGTTTTGCAGTCTCGTGTCGACTTGTGCGTGTTTCGTTCGTTCCCAGGCCGAGGCCATCGGGGAACAGCAAGGGTCAACTAACTACTGCCCCGAGTAGTGCTGTTTAGAGTTGTTTAACGGATTTCGTATTAATAAAATAGCTGAGGACATGAGAGGAAGCAAGATTTGTTTTGTGTTGTTCATATGTTGCATTTGTGCAAGCTGTGGTGCATGGGGTGATATGATGACGATAAATTGACAATGAATATATTTTATTATTCTGTACACTGTACATGTGTTACAAAAGTGGCGAAATCACCACGCATATATTGACTGGAACACATTATACATTATTTGTCCATCATAAATGTGAACGTATATGCACTACACCAGTAGAAATACCACTGATGGCAATGGACAATTATGATATTTACACCCTTTTATTTCTCGAACAGAACTCGTCAGCTGAAATATCAGTTTTCAAAAATCTACTTTCCAGAAAACAGATCAAATCTAGTATACAATATGCATGCACCAGACATTTCTGCATATTTACGAGGATGCACAAGATGTATGTTGCAAGGTTCTATTGCATTTTGAAATAATTCTGTCTGCAACAGAGAATTTACTTTACATTTCAGTATACATAGTAACTTGCTGGACCACCAGATGGCGGTGTAATCTGCAGCAAACGCCTATCACACACACTTGGGGCTCTGTCTTCCCACATTTGTGGTTCTTGACACAGTGCTACCACCTGGTGGTTTAGAACATACACCACCTGAATAACAAAATATTTTTTATTTGTATTATTGAGCTTATTTAAGAACATTTCTAGATTATAGACAAATACATTTATAAAAGTTCAGATAGGAAACATTAGTATGTGTGTTACTTGCATTGATCTAAATCGCTCGCATCACAAATTGAGAACAATTGGAATTGCCAACTGCATTTTGGAACCACGTGGCTCTGCAATAAACTACTTGCAAATATCACACCTTTGCTTGTAAAAATTTGCGTCAGAACCTGAATGTACAAACGACAATATAGCATATGATAAATCTATAATGATTATGTACATGAAGAACAAATCCTGAACGGGTTGGATTGGTTGCCACATATTTTTTGTCCTAGGTAGGCACATTTCTCACTCTAAATATTCGCACTAAATTTATAGCAGTTCTGCTATAATGATCATTTACCGACACAGAAAATATACGACTACAATATTTCCTCGGATACGACTACCCTTGCTAAACGCATATCATTTTAATATTGCTAAAACTTGGGAATAAAACATAGCATTTAAAAATTATGGCTGGGGTTGCCACATACTCTATGAAATACTTAATTATGGTGAAGATGAAATAATCAGCAGTATAACCACTCAGACGAGCGGTAAAACAACACTACAAAGTTAAGAGGTTACTAGATTTACACTTGACAACACTGATAGTGAGCACGATGACTTCATACTTTGTTGCAACCGAGAATTGTGATAATACACTAATTTCACGTTACCAAGAGTATCTTAGGTACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00481	PP2C	Protein phosphatase 2C	Family	Interproscan
PF07830	PP2C_C	Protein serine/threonine phosphatase 2C, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000222	Binding_site	PPM-type phosphatase, divalent cation binding	Interproscan
IPR001932	Domain	PPM-type phosphatase-like domain	Interproscan
IPR012911	Domain	Protein serine/threonine phosphatase 2C, C-terminal	Interproscan
IPR015655	Family	Protein phosphatase 2C	Interproscan
IPR036457	Homologous_superfamily	PPM-type phosphatase-like domain superfamily	Interproscan
IPR036580	Homologous_superfamily	Phosphatase 2C, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47992	PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000287	Molecular Function	magnesium ion binding	Interproscan
GO:0004721	Molecular Function	phosphoprotein phosphatase activity	Interproscan
GO:0004722	Molecular Function	protein serine/threonine phosphatase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0030145	Molecular Function	manganese ion binding	Interproscan
GO:0032873	Biological Process	negative regulation of stress-activated MAPK cascade	Interproscan
GO:0035970	Biological Process	peptidyl-threonine dephosphorylation	Interproscan
GO:0043169	Molecular Function	cation binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-