Gene detail

Detailed information of Lsat_s126.g0022.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s126.g0022.t1	AAA-FAMILY ATPASE	Lsat_scaffold126	523146	542870	+

Gene Structure

More details in Jbrowse Sequence

CDS

Lsat_s126.g0022.t1

ATGAAACGAAAACATTCGGAAGCTCGGATAAATCCGACCTTCCAGCAGGATTTACAACCCACGAAGTTACCCTACGTGTCAGATCCTAAATTAATTGCCAGAGTAAAACAGTATGTGGAGGGGAGCAAGAAGCAAGTTATCAATGTCTCTTTGATGGCAGAAGACATACAAAAACGCTACAGCGAATACAAGAGGAAGAAGAAACAAGCATTCATCAAAGCAGTGGAGAAAGCACACGAAGCAGTTTGTGTGAGGCAAAGTGGAGATGAACACAGTTCTTTGGAGCTAAAACATTTACAGAAGCAGCAGAAGTTGCCTGAACAAAGCGGAGAAACTAGCAGTGATTCCACAGACTCAGACATGGAAAAGAGTTTCTCATCAGACAACCAAGAATATGTCAATTACAAGGACACAAATACAATGAATAGTTGTATGACAGATCTGTATAAAGGAAGCACACCCAACTCCAGCCGACCGGGGACTCCTTCAAGGGGCAGTCAGCCATCCAGTAGAGCTGGTACCCCATCTAGGAGCCTGCCCGGCAGTAACCCCCAATCTGGTCGGTCATCACCCCGCAGGGCGTCTAGTTGGTGTGGCAAAGACAGTAGCCATGGAGACGGTCGTGACCTGGAGAAAGCGTTGTTTATCATTGATAGGGTCGGGAATTTGAAACAAAAGGGTAAAGTCCCTGTGGTGGAATCTCCATTGGCAGCAGACTCCAGGAAAACATCTACGAACAGTCCAAGTGATAGACACGTAGACTTGGCTGAAACGTCTTTAATCTCCCCAGTGAATGAATGTGTAGAAATGACATTGGACGTGCAGCGGCAGGAAACGAAGAAAGATAATTTGAATGATGGTAGCACCAGGACAGATGAGCATCAACTTAGTGTAACAGATGAATCTATGGATGCTGGGACAAAGATGAGACAAGATAAATACACCACACCTGTAACAGAGGAGGCGGGGAAGTCAAGAAAGTCATCCACAGGGAAGAAGTTTAAACGGAAGAAGGCACAAGAAGGGGAAGAAAAGGAAGAAAGGAAGAAGACAATGAGGGGACCAGAGCCAACCCTGTCAACTGTCAAGTTTGCTGACATTGGCGGAAGTGAAGCAGCACTTCTAGAAGTGTGTAAACTCTTGGTGCACATGAAACACCCCGAGGTCTACCAGCGGCTTGGAGTAACCCCACCCCGAGGGTTTCTACTGCATGGACCCCCTGGCTGTGGTAAAACACTTCTGGCACATGCCATAGCTGGGGAGTTACAGCTGCCATTCATCAAGCTTGCTGCGACTGAGGTTGTGTCGGGAGTCTCCGGTGAATCTGAGGAAAAACTGAGAGACATCTTTAACAGTGCCACTGCCACTGCTCCATGTATCTTGTTCCTTGATGAGATTGACTCTATCACGCCAAAGCGAGAGAATGCATCGAAGGACATGGAGAGGCGTATAGTCGCCCAACTCCTTACCTGCATGGATGATTTGAACAGTAAGTCAACTGGACACGTTCTGGTGATTGGGGCCACCAACAGGCCCGATGCCCTTGACCCAGCCCTTAGACGGGCCGGGCGGTTTGACCGTGAAATCTCCCTCGGCATTCCAGATGAAGGCGCACGAATTGGGATCCTCAAGGTGTTGTGTCGAGACCTGCGTCTCGAGACAGACTTTGACTTTGAAGGGTTGGCACACAACACTCCGGGCTACGTCGGGGCTGACCTGATGGCACTGGCCAGAGAGGCCGCCATCACTGCAGTAAACAGAGTGTTCCAAGCTCTCAAGAGTGAGAAAGAGACAGGAGAGGTCAAAGTAGATGATATTGTTAATGATGACCCCATAACTCAGAAAGAGGCTGTAACCATGGAAACAGAGAAGACCACAGAGGCAGAGAAGACCACAAGCTCATGTGAAACAGTTATGACAACGGTCCCAGTTGGTGACATCACAATCAGGGATGTGACGGCTAGTGGTGTCACAGATATAAATGTGACAGTCAGTGATGTCAAAATGGACACCACGAATGCTGTCAACAAGTCAGCAAGTGACACGGACATACTTGCTGTTAGAAAGTCCGTCACCATGGAAACACTGGATGTGACAATGACGACAAAACGTGACATTATTGAAGAACTTGATTCAGTTCTGGGCTGGTTGAAGGACACGCCTCCTCTCACTGATCACCAGCTGTCATCTCTCTTTATCACCATGGCGGACTTTAATATGGCGCTCACCAAAGTGCAGCCTTCAGCGAAGCGAGAAGGTTTTGCGACAATCCCTGGAGTCACGTGGGACGATATCGGTGCCCTCTACGACATTCGAGAAGAACTGCAAATGGCCATCTTAGCCCCGGTGAAGCATCGTGCCCAGTTCGCAGCCCTCGGGCTAACTACCCCTCCTGGGGTGCTGCTGGCTGGCCCTCCCGGCTGTGGGAAGACGCTGCTGGCAAAGGCTGTGGCCAATGAATCGGGCATCAACTTTATCTCAGTGAAAGGTCCAGAACTCCTCAATATGTATGTGGGAGAGAGTGAACGCGCTATCAGGCAAGTCTTCCAGAGGGCGAGGGATTCTGCCCCATGTGTTATATTCTTTGATGAGCTTGATGCCCTGTGTCCTCGCAGGTCTCAAGGAGGCGAGGGTGGCGCCAGTGTACGAGTGGTCAACCAGCTACTGACTGAGATGGACGGATTGGAGGCCCGCAAGCAGGTGTTTGTGATGGCCGCCACAAACAGACCAGACATCATAGACCCAGCGATGTTGCGTCCAGGCAGACTGGACAAGATACTCTATGTTGGTCTGCCGTCATGTACAGATCGTGCCGACATACTGATCGCTGTGACTAAGAATGGCACACGACCGCGACTGCGGCAGGAAGTGTGTCTGGATTCTGTCGCTGCAGACCCTCGCTGCAACAACTTCACTGGCGCTGATCTGGCGGCTTTGGTGCGAGAGGCAGCTGTTGCCGCCCTGAAGGAGTTCATGGAAACTACCCACCCCGCCAGTGAAACTCCTGCAGTCGGAAGTCAACACTTTGATGTCGCCTTCCGCAAAGTCAAACCATCTGTTTCAAATAAGGATCAAAATGTGTTTGCTGCTATGAAGGCCAGGGTAGAAAGATGA

Transcript

Lsat_s126.g0022.t1

CCGCACGTGAATCAGAAAAGTCGGATTGGTTTCAGCAAACATTATTTTATTTATGATGAAACGAAAACATTCGGAAGCTCGGATAAATCCGACCTTCCAGCAGGATTTACAACCCACGAAGTTACCCTACGTGTCAGATCCTAAATTAATTGCCAGAGTAAAACAGTATGTGGAGGGGAGCAAGAAGCAAGTTATCAATGTCTCTTTGATGGCAGAAGACATACAAAAACGCTACAGCGAATACAAGAGGAAGAAGAAACAAGCATTCATCAAAGCAGTGGAGAAAGCACACGAAGCAGTTTGTGTGAGGCAAAGTGGAGATGAACACAGTTCTTTGGAGCTAAAACATTTACAGAAGCAGCAGAAGTTGCCTGAACAAAGCGGAGAAACTAGCAGTGATTCCACAGACTCAGACATGGAAAAGAGTTTCTCATCAGACAACCAAGAATATGTCAATTACAAGGACACAAATACAATGAATAGTTGTATGACAGATCTGTATAAAGGAAGCACACCCAACTCCAGCCGACCGGGGACTCCTTCAAGGGGCAGTCAGCCATCCAGTAGAGCTGGTACCCCATCTAGGAGCCTGCCCGGCAGTAACCCCCAATCTGGTCGGTCATCACCCCGCAGGGCGTCTAGTTGGTGTGGCAAAGACAGTAGCCATGGAGACGGTCGTGACCTGGAGAAAGCGTTGTTTATCATTGATAGGGTCGGGAATTTGAAACAAAAGGGTAAAGTCCCTGTGGTGGAATCTCCATTGGCAGCAGACTCCAGGAAAACATCTACGAACAGTCCAAGTGATAGACACGTAGACTTGGCTGAAACGTCTTTAATCTCCCCAGTGAATGAATGTGTAGAAATGACATTGGACGTGCAGCGGCAGGAAACGAAGAAAGATAATTTGAATGATGGTAGCACCAGGACAGATGAGCATCAACTTAGTGTAACAGATGAATCTATGGATGCTGGGACAAAGATGAGACAAGATAAATACACCACACCTGTAACAGAGGAGGCGGGGAAGTCAAGAAAGTCATCCACAGGGAAGAAGTTTAAACGGAAGAAGGCACAAGAAGGGGAAGAAAAGGAAGAAAGGAAGAAGACAATGAGGGGACCAGAGCCAACCCTGTCAACTGTCAAGTTTGCTGACATTGGCGGAAGTGAAGCAGCACTTCTAGAAGTGTGTAAACTCTTGGTGCACATGAAACACCCCGAGGTCTACCAGCGGCTTGGAGTAACCCCACCCCGAGGGTTTCTACTGCATGGACCCCCTGGCTGTGGTAAAACACTTCTGGCACATGCCATAGCTGGGGAGTTACAGCTGCCATTCATCAAGCTTGCTGCGACTGAGGTTGTGTCGGGAGTCTCCGGTGAATCTGAGGAAAAACTGAGAGACATCTTTAACAGTGCCACTGCCACTGCTCCATGTATCTTGTTCCTTGATGAGATTGACTCTATCACGCCAAAGCGAGAGAATGCATCGAAGGACATGGAGAGGCGTATAGTCGCCCAACTCCTTACCTGCATGGATGATTTGAACAGTAAGTCAACTGGACACGTTCTGGTGATTGGGGCCACCAACAGGCCCGATGCCCTTGACCCAGCCCTTAGACGGGCCGGGCGGTTTGACCGTGAAATCTCCCTCGGCATTCCAGATGAAGGCGCACGAATTGGGATCCTCAAGGTGTTGTGTCGAGACCTGCGTCTCGAGACAGACTTTGACTTTGAAGGGTTGGCACACAACACTCCGGGCTACGTCGGGGCTGACCTGATGGCACTGGCCAGAGAGGCCGCCATCACTGCAGTAAACAGAGTGTTCCAAGCTCTCAAGAGTGAGAAAGAGACAGGAGAGGTCAAAGTAGATGATATTGTTAATGATGACCCCATAACTCAGAAAGAGGCTGTAACCATGGAAACAGAGAAGACCACAGAGGCAGAGAAGACCACAAGCTCATGTGAAACAGTTATGACAACGGTCCCAGTTGGTGACATCACAATCAGGGATGTGACGGCTAGTGGTGTCACAGATATAAATGTGACAGTCAGTGATGTCAAAATGGACACCACGAATGCTGTCAACAAGTCAGCAAGTGACACGGACATACTTGCTGTTAGAAAGTCCGTCACCATGGAAACACTGGATGTGACAATGACGACAAAACGTGACATTATTGAAGAACTTGATTCAGTTCTGGGCTGGTTGAAGGACACGCCTCCTCTCACTGATCACCAGCTGTCATCTCTCTTTATCACCATGGCGGACTTTAATATGGCGCTCACCAAAGTGCAGCCTTCAGCGAAGCGAGAAGGTTTTGCGACAATCCCTGGAGTCACGTGGGACGATATCGGTGCCCTCTACGACATTCGAGAAGAACTGCAAATGGCCATCTTAGCCCCGGTGAAGCATCGTGCCCAGTTCGCAGCCCTCGGGCTAACTACCCCTCCTGGGGTGCTGCTGGCTGGCCCTCCCGGCTGTGGGAAGACGCTGCTGGCAAAGGCTGTGGCCAATGAATCGGGCATCAACTTTATCTCAGTGAAAGGTCCAGAACTCCTCAATATGTATGTGGGAGAGAGTGAACGCGCTATCAGGCAAGTCTTCCAGAGGGCGAGGGATTCTGCCCCATGTGTTATATTCTTTGATGAGCTTGATGCCCTGTGTCCTCGCAGGTCTCAAGGAGGCGAGGGTGGCGCCAGTGTACGAGTGGTCAACCAGCTACTGACTGAGATGGACGGATTGGAGGCCCGCAAGCAGGTGTTTGTGATGGCCGCCACAAACAGACCAGACATCATAGACCCAGCGATGTTGCGTCCAGGCAGACTGGACAAGATACTCTATGTTGGTCTGCCGTCATGTACAGATCGTGCCGACATACTGATCGCTGTGACTAAGAATGGCACACGACCGCGACTGCGGCAGGAAGTGTGTCTGGATTCTGTCGCTGCAGACCCTCGCTGCAACAACTTCACTGGCGCTGATCTGGCGGCTTTGGTGCGAGAGGCAGCTGTTGCCGCCCTGAAGGAGTTCATGGAAACTACCCACCCCGCCAGTGAAACTCCTGCAGTCGGAAGTCAACACTTTGATGTCGCCTTCCGCAAAGTCAAACCATCTGTTTCAAATAAGGATCAAAATGTGTTTGCTGCTATGAAGGCCAGGGTAGAAAGATGACGAGTACACAGACTGCACAACCGCTATTGGAAACATATGATTAATATCAGGACTTGTGTCAATTAATT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF16725	Nucleolin_bd	Nucleolin binding domain	Domain	Interproscan
PF17862	AAA_lid_3	AAA+ lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR003960	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031996	Domain	NVL2, nucleolin binding domain	Interproscan
IPR038100	Homologous_superfamily	NVL2, N-terminal domain superfamily	Interproscan
IPR041569	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR050168	Family	AAA ATPase domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23077	AAA-FAMILY ATPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0042254	Biological Process	ribosome biogenesis	Interproscan
GO:0051973	Biological Process	obsolete positive regulation of telomerase activity	Interproscan
GO:1990275	Molecular Function	preribosome binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-