Gene detail

Detailed information of Lsat_s125.g0019.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s125.g0019.t1	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Lsat_scaffold125	761455	815069	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s125.g0019.t1

CACGTTTAGTGCGTGTGTGATGATGGAGGGCCTGGAGTTATTCCGTAAACTCGGCGCAGGGGCTAAGTTCAATTTTAAACGGTTCAGAAGTGACGCGGAAAGATTAAAGATAATTCAGCCAAAACAGAAGCAAGAAGGAGAGTCAGGCAAAAGTGTCCTTGACTTCTTCAATACACTGTCAAGAGAGGGAGCCACAGTACACAATGGTCCTGCAAAACAGTCACCCTCAGAGAAGATAAAAGAAGATGACACTAGTAGCATTGACAAGAGTGACTTGTCGGAAGATGATGAGGGCTCAGTACGGCTGCTGCAAGCTGGTTGTCATGGTGACAGGGATGGACCACGAAGGAAGAAGAGGAAGAAAGAGAAGAGGACGGTCCAGAAACTGGCTCAGATGAAAAGAGAACAGATGAGCTACTTGCGCCGCCAACACCACATCCACGTCCATGGCTCTGACATCCCAGATCCCGTGAGCAGCTTCCAACAGCTGATGGAGGAGTACCACGTTCATCCCCAGCTGATGCGGAATGTGGCTGCCCTGGGGTTCGACGCACCCACTCCCATCCAGATGCAGGCCATCCCTGGGATGCTACAGGGTCGGGAGTTGTTGGCCTGTGCTCCCACGGGCTCTGGGAAGACCGCTGCCTTCATTCTTCCCATTCTACACACCTTGAAGCAACCCCAGAACTGTGGGTTTAGGGCCCTGGTTCTCTCCCCTACTAGGGAGCTGGCGAAACAGACACAGCGGGAGTTCTGTCATTTGGCCGAGGGACGTGGATTTCGTATACACATCATTGAGAAATCCAAAACTGCCGCAAAGAAGTTTGGTCCCAATTCGTCTAAAAAATTTGATATCTTAGTGTCGACACCAAGCCGCCTCGTGTATCTTCTGAAGCAAGAACCCCCACTTATCTCTCTCAGCAATGTCGAGTGGCTGGTGGTGGACGAGTCTGACAAACTGTTTGAAGAAGGAAAGACGGGATTCAGGGACCAGCTTGCGACCATCTACAAGTCATGTGACTCTGGGTGTCTGCGGCGTGCAATGTTCAGTGCAACTTTCGCACACGACGTAGAAGAGTGGTGCAAACTGAACCTAGACAACGTGATTCAGGTGTATGTTGGTGCCAAGAATGTGGCGGCTGACTCGGTGAAGCAGGAGTTAGTGTTTGTTGGTTCTGAAGCCGGCAAGTTGATAGCTATCAGAGACATCATTAGGAAGGGCATTCAGCCGCCAGTGCTGGTGTTTGTGCAGTCCAAGGAACGAGCCAAGGAACTGTTCCATGAACTCATTTATGATGACATCAACGTTGATGTGATCCACGCAGACAGACCTCAACTACAGCGAGACAATGTCGTAACAAGTTTCCGACTGGGGAAGATCTGGGTTCTCATCTGTACGGAGCTGATGGGGAGAGGCATCGACTTTAAAGGAGTGAACCTTGTTGTCAACTACGACTTCCCCAATAGTGCCGTCAGCTACATCCATAGGATAGGGCGCACTGGGAGGGCGGGCAGAGAAGGTCGGGCTGTGACCTTCTTCACAGAGGAAGATGCCCTTAACCTGAGAAGCATCGCCAATGTGATGCAGCAGGCTGGGTGCCCCGTCCCAGCCTACATGCTCAAGATTGGCCGGCCAACTCAAAAAGCACGTAAGAAACTGGCTAAGTTTACTCCGAGGCGAGACTCGATCAGAACTCTTCCTAGTGACGACTCAGAGAAAGCAAAGAAGATGCGAAAACTGAAGAAAAGGTCAAAGGCCAAACAACACAAAGGAACGCCCAGACAGGGCGTGTCAGCCGCCCCCGACACCACTCTAGTGACACGGAAGGGGAACAAATATAAAGGGGCAACTGACAGTGGAAAGAAGAAACTAAAGACATCTAAGACGACAGAGACATAGATGGAAGAACATTAATACGATCACAGGACAGAACAGGACAGGACAGAACAGGACTGGATGCTTTGGTCACTGCTTAATCCTTAATAAATGAAGACCAATTATTACCGTCGTTTCTTTGATGAAGACTTTATTGGCACAGTGATAACTTTACAGTAATAAAAACATGATTCAATCACAGATAATTAAAATGAATCGCAATAATTTTTATATTGCAACACCCACCTATTTTATTGACTACTATAGTGTCAGAACCTCTCTAGAATGACCAGTCTGTTGATGCCACCCTGATACAATCACATGGGTGTTGCTACCTCTATATCTTTGTGTAACAACCAGTTCAGGTGATATAACCCCATTATAATGACCACACTGGCATCATTTCATTGTAACTGGTATAGTCACCTTGCTATAAAGACCAATGATTACACCACCTGGTAGTAACGACCACCAACAAACTTGTCCAATCAATGATAAAAGTTTGCAGGTTATAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR044764	Domain	DDX52/Rok1, DEAD-box helicase domain	Interproscan
IPR050079	Family	DEAD box RNA helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0030490	Biological Process	maturation of SSU-rRNA	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-